ID:

dsi_24431

 Coordinate:

3l:8032268-8032344 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.1 -7.1 -7.0 -7.0

Flybase annnotation

CDS [3l_8032216_8032267_+]; exon [3l_8032070_8032267_+]; CDS [3l_8032345_8032603_+]; exon [3l_8032345_8032603_+]; intron [3l_8032268_8032344_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------##################################################
GGTGTACACCGGTTACTTAAGCAACGGATTGCAGAATGCTGAGGACACTGGTAAGCTGACAGCGCATTTTTTTTTACGATTAATCATTTGCCCATGTATATGCGATATGCGAATCGAATATATTTAGAATGGTTGCCGTATGGAGATCCCAATGACTGGGCACATGGTCTAGCGGCT
**************************************************.....((...................(((((......((((..........))))......))))).........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 O001
Testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................GGGGATATGGTCTAGCG... 17 2 5 3.60 18 12 0 0 6 0 0 0 0
.............................................................................................................................................................GGGCGCATGGTCTAGTGG.. 18 2 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................GGGGATATGGTCTAGCGG.. 18 2 4 2.00 8 5 0 2 1 0 0 0 0
............................................................AGGGCATTTTTTTTTTCGAT................................................................................................. 20 2 4 1.25 5 0 5 0 0 0 0 0 0
......................................................................................................................................GCCGTATGGAGATCCCAATGACTG................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................GATTGCAGAATGCTGAGGACACTGAAT............................................................................................................................ 27 3 1 1.00 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................GGTCCCATGGTCTAGCGG.. 18 2 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................GCATTTTTTTTTACGATTA............................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................GGGCGCATGGTCTAGTG... 17 2 2 0.50 1 1 0 0 0 0 0 0 0
...................AGGAATGGATTGAAGAATGCTG........................................................................................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................GGGCGCATGGTCTAGA.... 16 2 12 0.25 3 2 0 0 1 0 0 0 0
..........................................................ACAGCGTAATTTTTTTTAC.................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................GGGATATGGTCTAGCGG.. 17 2 12 0.17 2 1 0 0 1 0 0 0 0
..............................................................................................................................................................GGGATATGGTCTAGCG... 16 2 20 0.15 3 3 0 0 0 0 0 0 0
.............................................................................................................................................................GGGTCCATGGTCTAGCGGTT 20 3 7 0.14 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TGACTGGGCTCACGGTTTA...... 19 3 16 0.13 2 0 2 0 0 0 0 0 0
..................................AATGCTGAGGACTCT................................................................................................................................ 15 1 8 0.13 1 0 0 1 0 0 0 0 0
...............................CAGAATGGTGGGGACAC................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 0 1
.....................................................................................................................................CGCCGTCTGGAGATCCC........................... 17 2 18 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................GGGGATATGGTCTAGCGT.. 18 3 20 0.05 1 0 0 1 0 0 0 0 0
.............................................................................................................................................................GGCCCCATGGTCTAG..... 15 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCACATGTGGCCAATGAATTCGTTGCCTAACGTCTTACGACTCCTGTGACCATTCGACTGTCGCGTAAAAAAAAATGCTAATTAGTAAACGGGTACATATACGCTATACGCTTAGCTTATATAAATCTTACCAACGGCATACCTCTAGGGTTACTGACCCGTGTACCAGATCGCCGA
**************************************************.....((...................(((((......((((..........))))......))))).........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................CGTCTTACGATTCCAGTGCCC.............................................................................................................................. 21 3 3 0.33 1 1 0 0 0
.............................................................................CTAATCAGAAAGCGGGTACA................................................................................ 20 3 7 0.29 2 2 0 0 0
...............................GTCTTACGATTCCAGTGCCC.............................................................................................................................. 20 3 5 0.20 1 0 1 0 0
........................................................................................................................................................AATGACCCGTGTGCCAG........ 17 2 11 0.09 1 0 0 1 0
.................................................................................................................................ACCAACGGCGTGCCTCTAA............................. 19 3 17 0.06 1 0 0 0 1

Generated: 04/24/2015 at 10:36 AM