ID:

dsi_24416

 Coordinate:

3l:7187736-7187816 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-22.3 -22.2 -22.2 -22.2

Flybase annnotation

CDS [3l_7186698_7188134_-]; exon [3l_7186082_7188662_-]

No Repeatable elements found

Sense Strand Reads

#####################################################################################################################################################################################
TCACGCTCATCTACTCGATTTACTCGTGGCCCAATGTCGTCCTGTGCTTCGTGGGCGGTTTCCTGATCGATCGACTGTTTGGCATTCGACTGGGCACGATTATCTACATGATGATCCTGCTGGTGGGTCAGCTGATCTTTGCCTGCGGCGGCATACTGGACGCCTTCTGGATGATGATTTT
**************************************************............((....((((.(((................((((.(((((((.....))))))).))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
...................TTCCTCGTGGCCCAATGG................................................................................................................................................ 18 2 2 19.50 39 0 27 3 1 0 0 5 0 2 0 0 1
.......................................................................CGACTGTTTGGCATTCGACTGGGCACG................................................................................... 27 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
....................................................................GATCGACTGTTTGGCATTC.............................................................................................. 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................GGTTTCCTGATCGATCGACT......................................................................................................... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
............................................................................GTTTGGCATTCGACTGGGC...................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTCCTGATCGATCGACTGTTTGGCATT............................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
................GATTTACTCGTGGCCCAATGTCGTCCT.......................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATCTTTGCCTGCGGCGGCATACTGGACGC.................. 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
........................................................GGTTTCCTGATCGATCGACTGTTTGGC.................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTTTGCCTGCGGCGGCATACTGGA..................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................CCAATGTCGTCCTGTGCT..................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.......CATCTACTCGATTTACTCGTG......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTTTGCCTGCGGCGGCA............................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................AGCTGATCTTTGCCTGCGGC................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................GGCGGGTTCCTGATCGATCGACT......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................CGTGGCCCAATGTCGTCCTGTGC...................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGGACGCCTTCTGGATGATGA.... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................GCTGATCTTTGCCTGCGGCGGC............................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............CGATTTACTCGTGGCCCAATG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGCCTGCGGCGGCATACTGGACGCCT................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................GGCGGTTTCCTGATCGAC.............................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGCATACTGGACGCCTTCTGGATGA....... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................TCGATCGACTGTTTGGCATTCG............................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................TTCCTCGTGGCCCAATG................................................................................................................................................. 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TACTGGACGCCTTCTGGATGATGTT... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................TTCGACTGGGCACGATTATCTACATGA...................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACTGGACGCCTTCTGGATGATGAT... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................CGTGGCCCAATGTCGTCCTGTGCTTC................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................CGTGGCCCAATGTCGTCCTGTGCTT.................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TCCTGATCGATCGACTGTTTGG................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................GCTGGTGGGGCAGCTGATCTTTGCCTGC................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATCTTTGCCTGCGGCGGG............................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................GGCCCAATGTCGTCCTGT........................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................CCTGATCGATCGACTGTTTGGCATTC.............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ATCGATCGACTGTTTGGCTT................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................GGCCCAATGTCGTCCTGTGC...................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TACTGGACGCCTTCTGGATGATGATT.. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................ATTTACTCGTGGCCCAATGTCA.............................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................TGTCGTCCTGTGCTTCGTGGGCGGTT......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................TACTGGACGCCTTCTGGATGATGATC.. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................TGTTTGGCATTCGACTGGGC...................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCTGGTGGGTCAGCTGATCTTTGCC...................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................TTCCTGATCGATCGACTGTTTGGC.................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GATCTTTGCCTGCGGCGGC............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................GTTTCCTGATCGATCGACTGTTTGG................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................CGACTGTTTGGCATTCGAC........................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TACTGGACGCCTTCTGGAT......... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................GTGCTTCGTGGGCGGTTTCCT..................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................GTCCTGTGCTTCGTGGGC............................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTTTGCCTGCGGCGGCATACTGGACGC.................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................CAGCTGATCTTTGCCTGC................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................GTTTCCTGATCGATCGAC.......................................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TTCGACTGGGCACGATTAA.............................................................................. 19 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................GATCGACTGTTTGGC.................................................................................................. 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...................TTCCTCGTGGCCCAA................................................................................................................................................... 15 1 9 0.44 4 0 3 0 0 0 0 1 0 0 0 0 0
.........................................................GTTTCCTGTCCGATCAACTGT....................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
...................TTCCTCGTGGCCCAATGGT............................................................................................................................................... 19 3 12 0.25 3 0 1 0 0 0 0 2 0 0 0 0 0
.........................................................................................................................................TTTGACTGCGGCGGTAT........................... 17 2 13 0.15 2 0 0 0 0 0 0 0 0 0 0 0 2
...................TTCCTCGTGGCCCAATGGA............................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0
....................................................................................................................................................CGGCATGCTGGACCTCTTCT............. 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
....................TCCTCGTGGCCCAATGG................................................................................................................................................ 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................GTTTCCTGTCCGATCAACT......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................AGACTGGACTCCTTGTGGA.......... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGTGCGAGTAGATGAGCTAAATGAGCACCGGGTTACAGCAGGACACGAAGCACCCGCCAAAGGACTAGCTAGCTGACAAACCGTAAGCTGACCCGTGCTAATAGATGTACTACTAGGACGACCACCCAGTCGACTAGAAACGGACGCCGCCGTATGACCTGCGGAAGACCTACTACTAAAA
**************************************************............((....((((.(((................((((.(((((((.....))))))).))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.................................................................TAGCTAGCTGGCAGACCGTGA............................................................................................... 21 3 5 0.40 2 2 0 0 0 0
................................................................CTAGTTAGCTGACAA...................................................................................................... 15 1 9 0.11 1 0 1 0 0 0
........................................................................................................................ACCACGCAGTCGACT.............................................. 15 1 9 0.11 1 0 0 1 0 0
......................................................................................................AGATGCACTACTAGG................................................................ 15 1 13 0.08 1 0 0 0 1 0
...............................................................ACTAGCAGGCTGACAAA..................................................................................................... 17 2 14 0.07 1 0 0 0 0 1

Generated: 04/23/2015 at 07:36 PM