ID:

dsi_24381

 Coordinate:

3l:8774135-8774284 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.1 -6.1 -5.9 -5.9

Flybase annnotation

exon [3l_8774285_8774672_-]; five_prime_UTR [3l_8774285_8774672_-]; intron [3l_8773000_8774284_-]

No Repeatable elements found

mature
star
  1. dsi_24381  3l:8774213-8774227 -
  2. 3r:27157642-27157656 +
  3. x:12150597-12150611 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATCGCGACTGCTAAAAGGGCAGCCAAAATACGAAAACATATAAGAGCGTGTGAGTTTGTAGTATCCTGTACGTTTTCGTGTGTGTGCGTGTTTGCAATCTTTGAACTTTGAACTTTTGTTGAACTTCGGTCATTTTTTTTTTGTGCAAGCCGGTTAGAAAACAACAGCAATTGCAGTGACGCATAACCTCAAAGATCGTGCATGCACAAGTACCGTTAGATCGAGTCGCGCCAAACGACTCTCTTGCGC
******************************************************.....((...............(((......((((....)))).....)))...............))******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 M023
head
..........GCTAAAAGGGCAGCCAAAATACGA........................................................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0
...CGCGACTGTTAAAAGGG...................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................AAAACATATAAGAGCGT........................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ACAGGTACCGTTAGATCGAGT....................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...................GCAGCCAAAATACGAAAACAT.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.ATCGCGACTGCTAAA.......................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................GTTTGTAGTATCCTGTACGTTT.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0
..........GCTAAAAGGGCAGCCAAAATACGAAAA..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGCACAAGTACCGTTAGATCG.......................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................AAAGATCGTGCATGCACAAG....................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................TGGTGCAAGCAGGTTAGGA.......................................................................................... 19 3 6 0.33 2 0 0 0 2 0 0 0 0
...........................................................................................................TTTGAACTTTTGTTG................................................................................................................................ 15 0 3 0.33 1 0 0 1 0 0 0 0 0
..................................................................................................TCTTAGAAATTTGAACTTTT.................................................................................................................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................GCACAAGTACCGTGA............................... 15 1 4 0.25 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACAAGTACCGTTAGG............................. 15 1 5 0.20 1 1 0 0 0 0 0 0 0
...................................................................TGTGCGTTTTCGTGTGT...................................................................................................................................................................... 17 1 12 0.17 2 0 2 0 0 0 0 0 0
............TAAAACGGCAGCCAAAA............................................................................................................................................................................................................................. 17 1 6 0.17 1 0 1 0 0 0 0 0 0
........................................................................................GTCTTTGTAATCTTTGAA................................................................................................................................................ 18 2 8 0.13 1 0 0 0 0 1 0 0 0
............................................................................................................................TTTCGGTCATTTTGTTTTTGGG........................................................................................................ 22 3 9 0.11 1 0 1 0 0 0 0 0 0
................................................................CCCTGTACGTTTTCGGATG....................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 1
..........................................................................................................................................TTTTTGTTCCAGCCGGTT.............................................................................................. 18 2 18 0.06 1 0 0 0 1 0 0 0 0
...............................................................................................................................................GTGCAAGCCGGATCGA........................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................GATCCAGTACGTTTTC............................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTAGCGCTGACGATTTTCCCGTCGGTTTTATGCTTTTGTATATTCTCGCACACTCAAACATCATAGGACATGCAAAAGCACACACACGCACAAACGTTAGAAACTTGAAACTTGAAAACAACTTGAAGCCAGTAAAAAAAAAACACGTTCGGCCAATCTTTTGTTGTCGTTAACGTCACTGCGTATTGGAGTTTCTAGCACGTACGTGTTCATGGCAATCTAGCTCAGCGCGGTTTGCTGAGAGAACGCG
********************************************************************************************************************************.....((...............(((......((((....)))).....)))...............))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.........................................................................................................................CTTGAAGCCAGTAAAAAAAAA............................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................ACATCATAGGACATGCAAAAGC........................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................ACGTGTTCATGGCAATCTAGCTC........................ 23 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................ACGTTCGGCCAATCTTTTGTT..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................TTCAGACTGGAAAACAACTT.............................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0 0
..............................................................................................CGTCAGAAACTTGCAGCTT......................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 1 0
.......................................................................................................................AACTAGCAGCCTGTAAAAAA............................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 12:30 PM