ID:

dsi_24367

 Coordinate:

3r:15761045-15761194 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACTCTGAACTGTGAACTCTGACCTCTGAGCTCAACTCTACAGCTGAATGGTAAAGCTTTGGCATTGTTTTCTTAATGTCTCCCATAGCATTTCTGGATGTTGTGTAACAATCGTCATTAACAAACGCCATCGTACATGGACATACTCGTACTATCTCTCTATATCGCCATAGCACCAATTGTCATCCAACTACTCATGTCTGTAAGCGAATATGTATTATCAAGTATTATTGTTCCGATGCGAGGGATA
*******************************************************************************....(((((((((....))))))))).................******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...........GTGAACTTTGACCTCT............................................................................................................................................................................................................................... 16 1 11 2.64 29 0 23 0 0 0 0 0 6 0 0
................................CAACTCTACAGCTGAATG........................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...TGTGAACTGTGAACTCTGACCTCTGAGC........................................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................GTAACAATCGTCATTAAC................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................AACAATCGTCATTAACAAACGCC......................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................CTACAGCTGAATGGTAAAGCTTTGGC........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................GTAACAATCGTCATTAACAAACGCC......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTCATCCAACTACTCATGTCTGTAAGC.......................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................CTCCCATAGCATTTCTGGAT....................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................CAGGATGTTGTGTAACACT.......................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................GACATACTCGTGCTATTCCT........................................................................................... 20 3 6 0.33 2 0 0 1 0 1 0 0 0 0 0
..........................................GCTCAATGGTAGAGCTTT.............................................................................................................................................................................................. 18 2 9 0.22 2 0 0 0 0 0 0 0 0 2 0
.......AATGGTGAACTTTGACCTCT............................................................................................................................................................................................................................... 20 3 10 0.20 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................GCTAAGTCTCTATATCGCCA................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 1 0
.................................AACTCTACAGCTGATCG........................................................................................................................................................................................................ 17 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0
..........................................................TCGGCATTGTTTTCTTTAT............................................................................................................................................................................. 19 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................CGACTCAGGTATGTAAGC.......................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATGAGACTTGACACTTGAGACTGGAGACTCGAGTTGAGATGTCGACTTACCATTTCGAAACCGTAACAAAAGAATTACAGAGGGTATCGTAAAGACCTACAACACATTGTTAGCAGTAATTGTTTGCGGTAGCATGTACCTGTATGAGCATGATAGAGAGATATAGCGGTATCGTGGTTAACAGTAGGTTGATGAGTACAGACATTCGCTTATACATAATAGTTCATAATAACAAGGCTACGCTCCCTAT
********************************************************************************************************************************....(((((((((....))))))))).................******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
...................................................................AAAAGAACTACAGAGGCT..................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0
..................................................................................................................................................AGCATGATAGCGGGATA....................................................................................... 17 2 8 0.13 1 0 1 0 0
...............................................................................................................................................................................................................................TCATAATACCAAGGGTA.......... 17 2 14 0.07 1 1 0 0 0
...................................................................................................................................................GTATGGTAGAGAGATAT...................................................................................... 17 2 15 0.07 1 1 0 0 0
.........................................................................................................ATTGTCAGGAGTAATTGTT.............................................................................................................................. 19 2 15 0.07 1 0 0 1 0
.....................................................................................................................................ATGTACCTGTGTGAG...................................................................................................... 15 1 16 0.06 1 0 0 0 1
...................................................................AAAAGAACTACAGAG........................................................................................................................................................................ 15 1 18 0.06 1 1 0 0 0
.........................................................................................................................................................TCGAGAGATATAGTGG................................................................................. 16 2 20 0.05 1 1 0 0 0
....................................................................AAAGAACTACAGAGGCT..................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15760995-15761244 - dsi_24367 TA----------------------CTCTGAAC---------------------------------------------TGTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------CTCCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATTATCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------
droSec2 scaffold_0:16630265-16630505 - CT----------------------------------------------------------------------------GTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------CTCCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTAAA-------------------------TCGCCATGGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATTATCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------
dm3 chr3R:5265378-5265627 + AA----------------------CTGTGAAC---------------------------------------------TGTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CA-TTGGCATTTT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATCATAAAGTATT----TTTGTTCCGATGCG----AGCGATA--------------
droEre2 scaffold_4770:16338232-16338480 - AA----------------------CTCTGAAC---------------------------------------------TGTGAAC-------TCTGAACTGTGAACT------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCGTTGT---------ATTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCA-----AT---------------CGTA--CATGGACATACT-------ATCT---------------------------CTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATC-TCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------
droYak3 3R:9312990-9313226 + AA----------------------CTCTGAAC---------------------------------------------TTTGAAC-------TGTGA--ACTC----------------------------------------------------------------------------------TA-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CTTTTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA---------------------------------CATGGACATACT-------ATAT-------------------------CTCTATATA-------------------------TCGCCATTGCACCAATAGTCATCCAACTACTC-----------------------------------------ATCTC-TG--TAAAACGAATATGTATC-TCAAGTATT----TCTGTTCCGATGCG----AGGGATA--------------
droEug1 scf7180000407136:433694-433995 - AA----------------------CTCTCAAC------------TCTCCAATCT---------------CCAA----ACTCAAC-------TCTGA--ACTC----------------------------------------------------------------------------------TG-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAG----CT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAACCGCC-----ATCT-------------CCTAC-CATGGACATACT-------ATCTC-----------------------------TATATCTCTAAAAATATATACTATATATATTGTCATAGCACCAATTGTCATTCAACTACTCTCTCTCTCTC--------------TCTCAAT---GCCT-ATATGTC-TA--T-------------ATA-TCAAGTATTATATATTGTTCCGATGGATAGTAGGGA----------------
droBia1 scf7180000302402:8001359-8001593 + CA----------------------CCAG----------------------ATCG---------------AC------TCTGAGC-------TCTGA--CC----------------------------------------------------------------------------------------G-------CCCGAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCAATGT---------TTTCTAAGTGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTACACATGGACATACT-------ATCTC-------------------------------TA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC------------------------GCTCAGT---GCCC---ATGTC-TG--TG---------TGTAGC-CCA----------------------------AGGGACAAGTCGATGAGTTAA
droTak1 scf7180000415811:276194-276462 - TT--------------------------GAA-------------------------------------------TCCACTGAAC-------TCTGA--ACTC----------------------------------------------------------------------------------TACAG-------CTCGAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACATACC-------CTCTA-------------------TATATCTCTATATA-------------------------TCGCCATAGCACCAATTGTCATCCTACTACTC------------------------TCTCAAT---GCCT-CTATGTC-TG--TA-AGCGAATATGTATC-TCAAGTATT----ATCGTTTCGATGCG----AGGGATA--------AGTTAT
droEle1 scf7180000491194:436421-436636 + TG-----------------------------------------------------------------------------TGAACTCTGAACTCA-A---CCCAAC-------------------------------------------------------------------------------TC-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAAA--GCC-CTGGCATTGA---------TTTCTAAATGT------------------------------------------CTTTCAT--AGC-ATTT---CTGAATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------TCTA--CATGGACATACT-------ACCTC-----------------------------TATA-------------------------TCGCCACAGCACCAATCGTCATCCTTCT-CTC------------------------CTTAAAA---GCCTACTAAGTC-TG--TG-AATGA--------------------------------------------------------------
droRho1 scf7180000779488:483974-484196 + AA----------------------CTCT----------------------------------------------------GAAC-------TCAGA--ACTC----------------------------------------------------------------------------------AA-CA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAAA--GCC-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACACACT-------CTATC-----------------------------TATA-------------------------TCGCCATAGCACTCA----CATACCACT---CTC----------------------TATCAA------------TGTC-TC--TA-AATGAATGTGTATC-CCGAGTAAA----------------AG----AGGG-T---------------
droFic1 scf7180000454106:1924196-1924436 - TG----------------------CTTCGAAC---------------------------------------------TCTGAAC-------TCTGA--CCTCAAC-------------------------------------------------------------------------------TC-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAA-AG----CCTTGGGCATTGT---------TTTCTAAGTGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACATACT-------CTATC-----------------------------TATA-------------------------TCGCCATCGCACCAAACGTCATTCAATTT---------------------------TCTCAA------------TGTC-TT--TC-AATGAATGTGTA-----------------TTATTCCAATGCG----GGGGATT--------AAATCA
droKik1 scf7180000302388:1820381-1820596 - TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-AA-------TCCAAC-----T-CCACCTGGTATTAGCTCCTGAATGGTAA-AAA--GCC-TTGGCTTTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---TTGGATGTTGTGTAACTCTATATCGCCATTAACAAC-CGCC-----AT---------------------CATGGACATGCT-------CTCTC-----------------------------TATCTC-----------------------CCATCAAAGCACCAAATGTCATCAAAAATCC-------------------------TGTAAAGAAAGCCC---ATGTCCTG--TG-------------AT-TCAAATATA-------------------------AATA--------------
droAna3 scaffold_13340:4783322-4783560 - CA----------------------GTCC-----------------------------------------------------AAC-------TC-GA--TC-CAAC-------------------------------------------------------------------------------AG-AA-------CTCAAC-----T-TTA----------CTTGCTGAATGGTAA-AGCCCCCT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------TTTCCATATAGCCTTTT---TTGGATGTTGTGTAATTAT--CTCGTCATTAACAAC-TGCC-----AT---------------TCTA--CATGGACATACT-------CTCTA-----------------------------TATA-------------------------TCGCCATAGCACCAAACATCATACAACTTTT---------------------------TAAA------------TGTC-TTTATA-AATGAA--------------TATT----ATTGTTCCGATTCAAAAAAAGGATT--------------
droBip1 scf7180000396359:406705-406927 + AT----------------------CCTCGATC-------------------------------------------------------------CAA--CAAC----------------------------------------------------------------------------------AG-AA-------CTCAAC-----T-TTA----------C-TGCTGAATGGTAA-AGC--CCT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------TTTCCAT--AGCCTTTT---TTGGATGTTGTGTAATT----ATCGTCATTAACAAC-CGCC-----AT---------------TCTA--CATGGACATACT-------CTCTC-------------------------------TA-------------------------TCGCCATAGCACCAAACATTATTCAAATC---------------------------TCTAAA------------TGTC-TTTACA-AGTGAA--------------TATT----ATTGTTCCGATTCG----AAGGAT---------------
dp5 2:3153195-3153458 - AT----------------------CCTCGACATCGACATCGGCATCTCCTA----------CTCCTACTCCAACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTCAACT-CTAAC-----T-CTA----------C-TGCTGAATGGTAA-AC----TC-T--------------------------TGT------------------------------------------CCTCCAT--AGC-ATTTTATTTGGATGTTGTGTAACTCT--ATCGTCATTAACAATAAACCATAGTAT---------------TGTA--CATGGACATAAAC-----CCTATC-----------------------------TATC-------------------------TCGCCATAGCACCATGCATACT---------CG--TACT--TCCAAATCGAAATCT-A--TA------------TGTA-C-----------------ATACTCGTATATT----ATTGTTCAAATTTA----AAGGATA--------------
droPer2 scaffold_7:1188656-1188941 + AACAGCAACAGCAACAGCACCGATCCTCGACATCGACATCGGCATCTCCTA----------CTCCTACTCCAACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTCAACT-CTAAC-----T-CTA----------C-TGTTGAATGGTAA-AC----TC-T--------------------------TGT------------------------------------------CCTCCAT--AGC-ATTTTATTTGGATGTTGTGTAACTCT--ATCGTCATTAACAATAAACCATAGTAT---------------TGTA--CATGGACATAAAC-----CCTATC-----------------------------TATC-------------------------TCGCCATAGCACCATGCATACT---------CG--TACT--TCCAAATCGAAATCT-A--TA------------TGTA-C-----------------ATTCTCGTATATT----ATTGTTCAAATTTG----AAGGATA--------------
droWil2 scf2_1100000004902:9734133-9734394 - CA----------------------CTCA----------------------ATCT---------------ACAA----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACTCAACA-ATAATTGAACTACAA----------T-TGCTGAATGGTAA-AGA--TTA-TTGGCATTGT---------TTTCTATATGTAATAGAGCCACCATCACCATATCATGCATATTTATATACAAATCTCAATAATGCAATTT---TTGGATGTTGTGTAACT----TTCT-----------------------------------------A--TCTCTATATACTATATACTATCTCTCGCTCTTACTGTCGCCCTTATATATATATATA-------------------------TCGTCATTAACTGAATTGTCATATATACATTT-----------------------------------------ATGT----------------------------------------------------------------------------
droMoj3 scaffold_6540:4674404-4674602 + TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------ATCAAC-----A----------------CGCTGAATGGTAA-AC----TG-TTGGCATAGTAATCGT---ATCCTAGGTGTATAAGTG----CATTAC-------------------------CTTCCAT--ACC-ATTA---TTGGATGTTGTGTAACT----CTCGTCATTAACAAC-TGCT-----ATCTTATTCTCTCTATATATA--CATGGACGTAGA-----CCATCTC----------------------------------------------------------------TAGCACAGATTGAAA----ACTGCAA-----------------------------------------ATG---C-----------------ATTCT-GCAAACA------------AA-------------T---------------
droGri2 scaffold_14906:5642385-5642640 - CA----------------------CTCA----------------------AGTCGCAGCTGATCTGAATTGAACTA-------A-------TCTGA--ACTGAACTGAACCGAACCAAACACACACACACACACACACGCGCAGAGTGGAGTGGAGTGAAGGAGTGGAAGGAGTGGAACCGAAGAG-AA-------ATCAAC-----T-CAA----------C-TGCTGAATGGTAACAA----TT-TTGGCATTGTAATCGTACTATTCTAAATGTATAAGAC----CATTAC-------------------------CTTCCAT--TCC-ATAC---TTGGATGTTGTGTAACT----CTCGTCATTAACT--------------------------------------------ACT-------ATCT------------------------------TATA-------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TA----------------------CTCTGAAC---------------------------------------------TGTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------CTCCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATTATCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................CAAC-----T-CTA----------C-AGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTAACA----ATCGTCATTAAC...............................................................................................................................................................................................................................................................................1811.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................AACA----ATCGTCATTAACAAA-CGCC-----..................................................................................................................................................................................................................................................................2311.00100100000000000000
.................................................................................................................................................................................................................CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTAACA----ATCGTCATTAACAAA-CGCC-----..................................................................................................................................................................................................................................................................2511.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGC................................................................2711.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................CTCCCAT--AGC-ATTT---CTGGAT..........................................................................................................................................................................................................................................................................................................2011.00100010000000000000
droSec2
CT----------------------------------------------------------------------------GTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------CTCCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTAAA-------------------------TCGCCATGGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATTATCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTC-----------------------------------------ATGTC-TG--TA-AGCGA..............................................................2011.0011000
.................................................................................................................................................................................................................................GCTGAATGGTAA-AG----CT-TTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCATGGCACCAATTGTC.....................................................................................................................................1911.0010010
dm3
AA----------------------CTGTGAAC---------------------------------------------TGTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CA-TTGGCATTTT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCC-----AT---------------CGTA--CATGGACATACTC-GTAC---------------------------TATCTCTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATCATAAAGTATT----TTTGTTCCGATGCG----AGCGATA--------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000100000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TTT---CTGGATGTTGTGTAACA----ATCGTC.....................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000100000
..............................................................................................................................................................................................................................................................................................................................................TT---CTGGATGTTGTGTAACA----ATCGTC.....................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..................................................................................................CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CTA----------C-AGCTGAATGGTAA-AG----CA-TT..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AG.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTATA-------------------------TCGCCATAGCACC............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................CTGTGAAC---------------------------------------------TGTGAAC-------TCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TA----------C-AGCTGAATGGTAA-AG----CA-TTGGCATT....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AGCGAATATGTATCATAAAGTA.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TGAATGGTAA-AG----CA-TTGGCATTTT---------T........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGA...........................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTGTGTAACA----ATCGTCATT..................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------ATGTC-TG--TA-AGCGAATATT.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CGTA--CATGGACATACTC-GTAC---------------------------T.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................C-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGTGAAC-------TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCTGAATGGTAA-AG----CA-TTG.........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCATAGCACCAATTGTCATCCAAC..............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TCTGA--CCTC----------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGC................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CATGGACATACTC-GTAC---------------------------TATCTCTC......................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGTATCATAAAGTAT............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................G-AG-------CTCAAC-----T-CTA----------C-AGCTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TGTTGTGTAACA----ATCGTCATTAACA..............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTC-----------------------------------------ATGTC-TG--TA-AGCGAAT............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----TTTGTTCCGATGCG----AGCGA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CTAAATGT------------------------------------------CTTCCAT--AGC-ATT....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................G-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CA-............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCTATA-------------------------TCGCCATAGCAC.............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAACTACTC-----------------------------------------ATGTC-TG--TA-...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AA----------------------CTCTGAAC---------------------------------------------TGTGAAC-------TCTGAACTGTGAACT------------------------------------------------------------------------------TG-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCGTTGT---------ATTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA-CGCA-----AT---------------CGTA--CATGGACATACT-------ATCT---------------------------CTCTATA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGAATATGTATC-TCAAGTATT----ATTGTTCCGATGCG----AGGGATA--------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................GAACTGTGAACT------------------------------------------------------------------------------TG-AG-------CTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGATGCG----AGGGATA--------------1911.0011000000
................................................................................................ACTGTGAACT------------------------------------------------------------------------------TG-AG-------CTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTCCGATGCG----AGGGA................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT---------------------------CTCTATA-------------------------TCGCCATAGCACCA...........................................................................................................................................2511.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTACTC-----------------------------------------ATGTC-TG--TA-AGCGA..............................................................2311.0010001000
............................GAAC---------------------------------------------TGTGAAC-------TCTGAACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TG--TA-AGCGAATATGTATC-TCAAGT..............................................2511.0010100000
...........................................................................................................................................................................................AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
AA----------------------CTCTGAAC---------------------------------------------TTTGAAC-------TGTGA--ACTC----------------------------------------------------------------------------------TA-AG-------CTCAAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CTTTTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACA----ATCGTCATTAACAAA---------------------------------CATGGACATACT-------ATAT-------------------------CTCTATATA-------------------------TCGCCATTGCACCAATAGTCATCCAACTACTC-----------------------------------------ATCTC-TG--TAAAACGAATATGTATC-TCAAGTATT----TCTGTTCCGATGCG----AGGGATA--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATATA-------------------------TCGCCATTGCACC............................................................................................................................................2211.00100000010000
............................GAAC---------------------------------------------TTTGAAC-------TGTGA--ACTC----------------------------------------------------------------------------------TA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT----TCTGTTCCGATGCG----AGGGAT...............2311.00100000010000
...........................TGAAC---------------------------------------------TTTGAAC-------TGTGA--ACTC----------------------------------------------------------------------------------TA-AG-------CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................TTTGAAC-------TGTGA--ACTC----------------------------------------------------------------------------------TA-AG-------CT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................................................................................................................................................................................................TTT---CTGGATGTTGTGTAACA----...........................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATATA-------------------------TCGCCATTGCACCAATAGT......................................................................................................................................2811.00101000000000
........................................................................................................................................................................................................AC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT.............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
AA----------------------CTCTCAAC------------TCTCCAATCT---------------CCAA----ACTCAAC-------TCTGA--ACTC----------------------------------------------------------------------------------TG-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAG----CT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAACCGCC-----ATCT-------------CCTAC-CATGGACATACT-------ATCTC-----------------------------TATATCTCTAAAAATATATACTATATATATTGTCATAGCACCAATTGTCATTCAACTACTCTCTCTCTCTC--------------TCTCAAT---GCCT-ATATGTC-TA--T-------------ATA-TCAAGTATTATATATTGTTCCGATGGATAGTAGGGA----------------SizeHit CountTotal NormTotal
No Reads
droBia1
CA----------------------CCAG----------------------ATCG---------------AC------TCTGAGC-------TCTGA--CC----------------------------------------------------------------------------------------G-------CCCGAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCAATGT---------TTTCTAAGTGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTACACATGGACATACT-------ATCTC-------------------------------TA-------------------------TCGCCATAGCACCAATTGTCATCCAACTACTC------------------------GCTCAGT---GCCC---ATGTC-TG--TG---------TGTAGC-CCA----------------------------AGGGACAAGTCGATGAGTTAASizeHit CountTotal NormTotal
No Reads
droTak1
TT--------------------------GAA-------------------------------------------TCCACTGAAC-------TCTGA--ACTC----------------------------------------------------------------------------------TACAG-------CTCGAC-----T-CTA----------C-AGCTGAATGGTAA-AG----CT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACATACC-------CTCTA-------------------TATATCTCTATATA-------------------------TCGCCATAGCACCAATTGTCATCCTACTACTC------------------------TCTCAAT---GCCT-CTATGTC-TG--TA-AGCGAATATGTATC-TCAAGTATT----ATCGTTTCGATGCG----AGGGATA--------AGTTATSizeHit CountTotal NormTotal
No Reads
droEle1
TG-----------------------------------------------------------------------------TGAACTCTGAACTCA-A---CCCAAC-------------------------------------------------------------------------------TC-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAAA--GCC-CTGGCATTGA---------TTTCTAAATGT------------------------------------------CTTTCAT--AGC-ATTT---CTGAATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------TCTA--CATGGACATACT-------ACCTC-----------------------------TATA-------------------------TCGCCACAGCACCAATCGTCATCCTTCT-CTC------------------------CTTAAAA---GCCTACTAAGTC-TG--TG-AATGA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AA----------------------CTCT----------------------------------------------------GAAC-------TCAGA--ACTC----------------------------------------------------------------------------------AA-CA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAAAAAA--GCC-TTGGCATTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACACACT-------CTATC-----------------------------TATA-------------------------TCGCCATAGCACTCA----CATACCACT---CTC----------------------TATCAA------------TGTC-TC--TA-AATGAATGTGTATC-CCGAGTAAA----------------AG----AGGG-T---------------SizeHit CountTotal NormTotal
No Reads
droFic1
TG----------------------CTTCGAAC---------------------------------------------TCTGAAC-------TCTGA--CCTCAAC-------------------------------------------------------------------------------TC-AA-------CTCAAC-----T-CAA----------C-AGCTGAATGGTAA-AG----CCTTGGGCATTGT---------TTTCTAAGTGT------------------------------------------CTTCCAT--AGC-ATTT---CTGGATGTTGTGTAACT----ATCGTCATTAACAAA-CGCC-----AT---------------CCTA--CATGGACATACT-------CTATC-----------------------------TATA-------------------------TCGCCATCGCACCAAACGTCATTCAATTT---------------------------TCTCAA------------TGTC-TT--TC-AATGAATGTGTA-----------------TTATTCCAATGCG----GGGGATT--------AAATCASizeHit CountTotal NormTotal
No Reads
droKik1
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-AA-------TCCAAC-----T-CCACCTGGTATTAGCTCCTGAATGGTAA-AAA--GCC-TTGGCTTTGT---------TTTCTAAATGT------------------------------------------CTTCCAT--AGC-ATTT---TTGGATGTTGTGTAACTCTATATCGCCATTAACAAC-CGCC-----AT---------------------CATGGACATGCT-------CTCTC-----------------------------TATCTC-----------------------CCATCAAAGCACCAAATGTCATCAAAAATCC-------------------------TGTAAAGAAAGCCC---ATGTCCTG--TG-------------AT-TCAAATATA-------------------------AATA--------------SizeHit CountTotal NormTotal
No Reads
droAna3
CA----------------------GTCC-----------------------------------------------------AAC-------TC-GA--TC-CAAC-------------------------------------------------------------------------------AG-AA-------CTCAAC-----T-TTA----------CTTGCTGAATGGTAA-AGCCCCCT-TTGGCATTGT---------TTTCTAAATGT------------------------------------------TTTCCATATAGCCTTTT---TTGGATGTTGTGTAATTAT--CTCGTCATTAACAAC-TGCC-----AT---------------TCTA--CATGGACATACT-------CTCTA-----------------------------TATA-------------------------TCGCCATAGCACCAAACATCATACAACTTTT---------------------------TAAA------------TGTC-TTTATA-AATGAA--------------TATT----ATTGTTCCGATTCAAAAAAAGGATT--------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AT----------------------CCTCGATC-------------------------------------------------------------CAA--CAAC----------------------------------------------------------------------------------AG-AA-------CTCAAC-----T-TTA----------C-TGCTGAATGGTAA-AGC--CCT-TTGGCATTGT---------TTTCTTAATGT------------------------------------------TTTCCAT--AGCCTTTT---TTGGATGTTGTGTAATT----ATCGTCATTAACAAC-CGCC-----AT---------------TCTA--CATGGACATACT-------CTCTC-------------------------------TA-------------------------TCGCCATAGCACCAAACATTATTCAAATC---------------------------TCTAAA------------TGTC-TTTACA-AGTGAA--------------TATT----ATTGTTCCGATTCG----AAGGAT---------------SizeHit CountTotal NormTotal
No Reads
dp5
AT----------------------CCTCGACATCGACATCGGCATCTCCTA----------CTCCTACTCCAACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTCAACT-CTAAC-----T-CTA----------C-TGCTGAATGGTAA-AC----TC-T--------------------------TGT------------------------------------------CCTCCAT--AGC-ATTTTATTTGGATGTTGTGTAACTCT--ATCGTCATTAACAATAAACCATAGTAT---------------TGTA--CATGGACATAAAC-----CCTATC-----------------------------TATC-------------------------TCGCCATAGCACCATGCATACT---------CG--TACT--TCCAAATCGAAATCT-A--TA------------TGTA-C-----------------ATACTCGTATATT----ATTGTTCAAATTTA----AAGGATA--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................ACTCCAACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................ATCTCCTA----------CTCCTACTCCAACTCC-----------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----CCTATC-----------------------------TATC-------------------------TCGCCATA.................................................................................................................................................2111.0010010000000
droPer2
AACAGCAACAGCAACAGCACCGATCCTCGACATCGACATCGGCATCTCCTA----------CTCCTACTCCAACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTCAACT-CTAAC-----T-CTA----------C-TGTTGAATGGTAA-AC----TC-T--------------------------TGT------------------------------------------CCTCCAT--AGC-ATTTTATTTGGATGTTGTGTAACTCT--ATCGTCATTAACAATAAACCATAGTAT---------------TGTA--CATGGACATAAAC-----CCTATC-----------------------------TATC-------------------------TCGCCATAGCACCATGCATACT---------CG--TACT--TCCAAATCGAAATCT-A--TA------------TGTA-C-----------------ATTCTCGTATATT----ATTGTTCAAATTTG----AAGGATA--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....CAACAGCAACAGCACCGATCCTCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003300000
........................................................................................................................................................................................................................................................................................................................................................................................AACCATAGTAT---------------TGTA--CATG.......................................................................................................................................................................................................................................1912.002200000
.......................................................................AACTCC-----------------------AC----------------------------------------------------------------------------------TG-AACTCAACT-CT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...........................CGACATCGACATCGGCATCTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................CGACATCGACATCGGCATCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................................TTTTATTTGGATGTTGTGTAACTCT--...........................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................CT-CTAAC-----T-CTA----------C-TGTTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................GTTGTGTAACTCT--ATCGTCATTAACA..............................................................................................................................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................CAACT-CTAAC-----T-CTA----------C-TGTTGAATGGT........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
AACAGCAACAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droWil2
CA----------------------CTCA----------------------ATCT---------------ACAA----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACTCAACA-ATAATTGAACTACAA----------T-TGCTGAATGGTAA-AGA--TTA-TTGGCATTGT---------TTTCTATATGTAATAGAGCCACCATCACCATATCATGCATATTTATATACAAATCTCAATAATGCAATTT---TTGGATGTTGTGTAACT----TTCT-----------------------------------------A--TCTCTATATACTATATACTATCTCTCGCTCTTACTGTCGCCCTTATATATATATATA-------------------------TCGTCATTAACTGAATTGTCATATATACATTT-----------------------------------------ATGT----------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................AATTT---TTGGATGTTGTGTAACT----TT.........................................................................................................................................................................................................................................................................................2412.00200110
...........................A----------------------ATCT---------------ACAA----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
........................................................................A----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
............................................................................................................................................................................................................AACTACAA----------T-TGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..................................................ATCT---------------ACAA----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
.A----------------------CTCA----------------------ATCT---------------ACAA----CCTGAAC----------------------------------------------------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.........................................................................................................................................................................................................................................GTAA-AGA--TTA-TTGGCATTG...................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..........................................................................................................................................................................................................TGAACTACAA----------T-TGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
........................................................................................................................................................................................................ATTGAACTACAA----------T-TGCTGAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............................................................................................................................................................................................................................................................................ATATGTAATAGAGCCACCATCACC............................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................AGA--TTA-TTGGCATTGT---------TTTC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.......................................................................AA----CCTGAAC----------------------------------------------------------------------------------------------------TG-AACTCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
droMoj3
TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG-------ATCAAC-----A----------------CGCTGAATGGTAA-AC----TG-TTGGCATAGTAATCGT---ATCCTAGGTGTATAAGTG----CATTAC-------------------------CTTCCAT--ACC-ATTA---TTGGATGTTGTGTAACT----CTCGTCATTAACAAC-TGCT-----ATCTTATTCTCTCTATATATA--CATGGACGTAGA-----CCATCTC----------------------------------------------------------------TAGCACAGATTGAAA----ACTGCAA-----------------------------------------ATG---C-----------------ATTCT-GCAAACA------------AA-------------T---------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................TA---TTGGATGTTGTGTAACT----CTCGTC.....................................................................................................................................................................................................................................................................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTAGA-----CCATCTC----------------------------------------------------------------TAGCACA............................................................................................................................................1911.001100000
droGri2
CA----------------------CTCA----------------------AGTCGCAGCTGATCTGAATTGAACTA-------A-------TCTGA--ACTGAACTGAACCGAACCAAACACACACACACACACACACGCGCAGAGTGGAGTGGAGTGAAGGAGTGGAAGGAGTGGAACCGAAGAG-AA-------ATCAAC-----T-CAA----------C-TGCTGAATGGTAACAA----TT-TTGGCATTGTAATCGTACTATTCTAAATGTATAAGAC----CATTAC-------------------------CTTCCAT--TCC-ATAC---TTGGATGTTGTGTAACT----CTCGTCATTAACT--------------------------------------------ACT-------ATCT------------------------------TATA-------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................GCAGAGTGGAGTGGAGTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101

Generated: 05/18/2015 at 06:29 PM