ID:

dsi_24361

Coordinate:

3r:10311584-10311807 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-40.7	-40.6	-40.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAAATTTCTGGGAAAATGTTGCGATTTTCCCTCGTCTGAACTTTTGCTTTTTAACTTTTTTCCTTCGCATTTTCCCTTTGGGGCTCATAAATTAGGGTCGCATTCCGCTTAACCAGGAATATTTGCATAAAATGGGAAAAAGGGCGAGAAATGGTTTAAATACGGGAATCACACGGCTGAGATATTCAACACATGAAAGAAAGGGGCAAATAAAATGAGTTCACAGGCCTTGATGGGGTGAGATAAAGCAAGCATTAAAGTCCCTTTATTTAGATGATAAAAAATTGAAAAAGAAAAGTGAAAATTAGCACTGCAAAAATTCC ************************************************...((((..((((..((((.(((((((..((.(((((........))))).))((((.........))))..............)))))))...)))))))).))))........((((((.((....)).))).)))......((((..((((((((......((((..(((((...(((....))))))))..........))))...)))))))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.....................................................................................................................................TGGGAAAAAGGGCGAGAAATGGTTT......................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................ATGCGGGAGTCACACGGC..................................................................................................................................................	18	2	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................ATCCGGGAGTCACACGG...................................................................................................................................................	17	2	5	0.20	1	0	0	1	0	0	0
............................................................................................................................................................TTAAATCCGGGAGTCAGAC.....................................................................................................................................................	19	3	14	0.07	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................TGAACAAGAAAAGTGA......................	16	1	15	0.07	1	0	1	0	0	0	0
..............................................GCTTTGTAACTTTTTT......................................................................................................................................................................................................................................................................	16	1	19	0.05	1	0	0	1	0	0	0
...............................................CTATTTAACTTTTTGCCGTC.................................................................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................AAGGGGCAATTAAAA............................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

AATTTAAAGACCCTTTTACAACGCTAAAAGGGAGCAGACTTGAAAACGAAAAATTGAAAAAAGGAAGCGTAAAAGGGAAACCCCGAGTATTTAATCCCAGCGTAAGGCGAATTGGTCCTTATAAACGTATTTTACCCTTTTTCCCGCTCTTTACCAAATTTATGCCCTTAGTGTGCCGACTCTATAAGTTGTGTACTTTCTTTCCCCGTTTATTTTACTCAAGTGTCCGGAACTACCCCACTCTATTTCGTTCGTAATTTCAGGGAAATAAATCTACTATTTTTTAACTTTTTCTTTTCACTTTTAATCGTGACGTTTTTAAGG ************************************************...((((..((((..((((.(((((((..((.(((((........))))).))((((.........))))..............)))))))...)))))))).))))........((((((.((....)).))).)))......((((..((((((((......((((..(((((...(((....))))))))..........))))...)))))))).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................................................................................GACTCTTTAAGTTGTG...................................................................................................................................	16	1	3	0.33	1	1	0	0	0	0
.....................................ACTTGAAAAAGAAAAAATGAAAA........................................................................................................................................................................................................................................................................	23	2	4	0.25	1	0	1	0	0	0
.....................................ACCTGATAACGAAAAATTGAC..........................................................................................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	1	0
..............................................................................................................................................................................GCCGACTCTACAAGT.......................................................................................................................................	15	1	9	0.11	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................AGGGAACTAAATCTA................................................	15	1	11	0.09	1	0	0	1	0	0
...............................................................................................................................................................................................................................................ACTCTATTTCTTTCG......................................................................	15	1	15	0.07	1	0	0	0	0	1
..................................................AAATTGAAAAAAGGCATC................................................................................................................................................................................................................................................................	18	2	18	0.06	1	1	0	0	0	0
.......................................................................AAAGGGACACCACGAGT............................................................................................................................................................................................................................................	17	2	18	0.06	1	0	0	1	0	0
...............................................................................................................................................................................................................................................ACTCTATTTGTTTCGTAG...................................................................	18	3	20	0.05	1	0	0	1	0	0

Generated: 04/24/2015 at 10:42 AM