dsi_24310

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+
MINIME_DN	Unknown	Unknown	+

TCGTTAAAAAGTTTGTAACACGTATTTATTTTATATTCTTGATCAGAATCAATAGTGTAGTCGATCTGGTCATGTCTGTCCGTCCGTATAGCATTCTATCCTGTTTTAAAGTATTTTTACTTCCGTTTTTTTATTCATACGTTTTATGTTGACTATTTATAGTTTATATCGTGTTTTATATTGGTTAACATGTTTTTCAGATTAAACAGCTTGAAAAATCCATTCACATAGGAGAACTGCAAGTTCGTGA ***************************************************(((((.((((...(((.((....)).)))..)).)).))))).............(((((....)))))........................(((((((((..(((((.............))))).)))))))))**********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
..................................................................................................................................................................TTTATATCGTGTTTTATATTGGTTAACA............................................................	28	0	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................TGAAAAATCCATTCACATAGGAGAAC.............	26	0	1	1.00	1	1	0	0	0	0	0
.....................................................AGTGTAGTCGATCTGGTCATGTCT.............................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................ATATAGCAGAACTGCAAGGTC....	21	3	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................TTTCAGATTATACAGCT.......................................	17	1	1	1.00	1	1	0	0	0	0	0
.........................................................................................................TTAAAGGATTTTCACGTCCGTTT..........................................................................................................................	23	3	2	0.50	1	0	0	1	0	0	0
........................................................GTAGTCGATCTTGTCATATA..............................................................................................................................................................................	20	3	3	0.33	1	0	1	0	0	0	0
....................................................TGTTGTAGTCGATCTTGTCAT.................................................................................................................................................................................	21	3	7	0.29	2	0	2	0	0	0	0
........................................................................TGTCTGTCCGTCCGTATA................................................................................................................................................................	18	0	6	0.17	1	0	0	0	0	1	0
.....................................................................TCGAGTCTGACCGTCCGTA..................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0
..........................................................AGTCGATCTGGTCATGTC..............................................................................................................................................................................	18	0	13	0.08	1	1	0	0	0	0	0
...........................................................GTCGATCTGGTCATGT...............................................................................................................................................................................	16	0	14	0.07	1	1	0	0	0	0	0
.............................................GGTTCAATAGTGTAGTCGG..........................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1
..GTTAAAACGTTCGTAAC.......................................................................................................................................................................................................................................	17	2	16	0.06	1	1	0	0	0	0	0
.............................................................CGATCTGGTCATGTC..............................................................................................................................................................................	15	0	17	0.06	1	1	0	0	0	0	0
........................................................GTAGTCTAGCTGGTCA..................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0
..................................ATTCTTGATCAGAATCAAT.....................................................................................................................................................................................................	19	0	20	0.05	1	1	0	0	0	0	0
..................................ATTCTTGATCAGAATCAATA....................................................................................................................................................................................................	20	0	20	0.05	1	1	0	0	0	0	0
.....................................CTTGATCAGAATCAAT.....................................................................................................................................................................................................	16	0	20	0.05	1	1	0	0	0	0	0

AGCAATTTTTCAAACATTGTGCATAAATAAAATATAAGAACTAGTCTTAGTTATCACATCAGCTAGACCAGTACAGACAGGCAGGCATATCGTAAGATAGGACAAAATTTCATAAAAATGAAGGCAAAAAAATAAGTATGCAAAATACAACTGATAAATATCAAATATAGCACAAAATATAACCAATTGTACAAAAAGTCTAATTTGTCGAACTTTTTAGGTAAGTGTATCCTCTTGACGTTCAAGCACT **********************************************************(((((.((((...(((.((....)).)))..)).)).))))).............(((((....)))))........................(((((((((..(((((.............))))).)))))))))***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
............................................................................................................................................................................................GTACAAAAAGTCTAATTTGTCGAACT....................................	26	0	1	1.00	1	0	0	0	1	0	0
............................AAAATATATGAACTAGACTTAGT.......................................................................................................................................................................................................	23	2	1	1.00	1	0	0	1	0	0	0
...............................................................................................................ATAAAAATGAAGGCAAAAAAATAAGT.................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................TTGTGGAAATTTTTAGGTGAGT........................	22	3	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................................................TTGTCGAAAGTTTTAGGTGAGT........................	22	3	5	0.40	2	2	0	0	0	0	0
...........................................................................................................................................................................................................TTTGTCGAAAGTTTTAGGTGAGT........................	23	3	3	0.33	1	1	0	0	0	0	0
...........................................................................................................................................................................................................TTTGTCGAAATTTTTACGTGAGT........................	23	3	3	0.33	1	1	0	0	0	0	0
............................................................................................................................................................................................................TAGTCGAAATTTTTAGGTGAGT........................	22	3	4	0.25	1	1	0	0	0	0	0
............................................................................................................................................................................................................TTGTCGAAATTTTTACGTGAGT........................	22	3	4	0.25	1	1	0	0	0	0	0
............................................................AGCTAGACCAGTATAGACAGACAGG.....................................................................................................................................................................	25	2	7	0.14	1	0	0	1	0	0	0
..............................................................................................................................AAAAAAGAAGTATGCAG...........................................................................................................	17	2	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................................................................GAGTCTTATGTGTCGAACTT...................................	20	3	12	0.08	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................AGTGGATCCTCTGGACG..........	17	2	13	0.08	1	0	1	0	0	0	0
..........................................................TCAGCTAGACCAGTAC................................................................................................................................................................................	16	0	14	0.07	1	0	0	0	0	0	1
......................................................................GTACAGACAGGATGGC....................................................................................................................................................................	16	2	15	0.07	1	0	0	0	0	1	0
.........................................................................................................................AGGAAAAAAAATAAGTA................................................................................................................	17	1	16	0.06	1	0	1	0	0	0	0
............................AAAATATAAGAACTAGGCCTAGT.......................................................................................................................................................................................................	23	2	20	0.05	1	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	node_4650:4393-4642 +	dsi_24310	TCGTTA-------AAAAGTTTGTAACACGTA-----------------------------------------TTTATTTTATA-------TTC----TTGATCAGAATCAATAGTGTAGTCGATCTGGTCATGTCTGTCCGTCCGTATAGCATTCTATCCTG----------T-------------------TTTAAAGTATTTTTA-CTTCCGT-----------TT----TTTTATTCATACGTTTTAT-------------------------------------GTTGACTATT--------------------TA------------------TAGTTTAT----------------------------------ATCGTGTTTTA--T-------------ATTGGTTAACATGTTTTTCAGATT--------------------------AAACAGCTTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTTCGTGA
droSec2	scaffold_65:129965-130216 +		TCGTTA-------AAAAGTTTGTAACACGTA-----------------------------------------TTTATTTTATA-------TTC----TTGATCAGAATCAATAGTGTAGTCGATCTGGTCATGTCTGTCCGTCCGTATAGCATTCTATCCTG----------T-------------------TTTAAAGTATTTTTA-CTTCCGT-----------TT----TTTTATTCATACGTTTTAT-------------------------------------GTTGACTATT--------------------TA------------------TAGTTTTT----------------------------------ATCGTGTTTTATTT-------------ATTGGTTAACATGTTTTTCAGATT--------------------------AAACAGCTTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTTCGTGA
dm3	chr2RHet:565544-565695 +		TATC-----------------------------------------------------------------------------------------------------------------------------------------------------------CTG----------T-------------------TTTAAAATATTTTTA-TTTCCG----------CTT------TTTATTCATACGTTTTT------------------------------------------ATTAGT--------------------TC------------------TAGTTTTT--------------------------------TGATCGTGTTTAATTT-------------ATTGGTTAAAATATTTTTCAGATT--------------------------AAACAACTTGAAAAATCCATTC----ATATAGGAGAAT----TGCAAGTTCGTGA
droEre2	scaffold_4929:22439872-22440059 -		TTGCTG-------ACACAACTACGGCACCTGACAAGTACCAG----------------------------------ATTTGTACTATTTTTTCTTAACCGTACTCACACAAA-----------------------------------T------------------------------------------------------------------A-----------TT----ATTTATTAATTTGCTTTAT-------------------------------------GT-----------------------------C------------------AAGAAA------------------------------------ATCGACTGTTATTA-------------ATTGTTAAACATTATTTTCAGATT--------------------------AAACAAATTGAAAAATCCATTC----ACATAGGAGAAC----TTCAAGTCCGTGA
droYak3	v2_chr2L_random_010:330396-330629 +		ACAAGT-------ACGGCTACCTAACAAGTACTATTTTA------------------------------------------TT-------TAA----CTGTACTCACACAAT-----------------------------------TTGCATTCATTCCTGTGGTTGTACTT-------------------TTTTAAGTATTTCAA-C---CCT-----------TT----TTTTATTTATTTGTTTTAT-------------------------------------AT-----------------------------CGAGGAAATCGATTATTTTTCTTTATT--------------------------------TGATCGTGTTTTATTA-------------ATTGGTAATCATGTTTTTCAGATT--------------------------AAACAAATTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTCCGTGA
droEug1	scf7180000409533:491273-491551 -		TCGTTA-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTGCGAGCCTATAAAGTATACA-----------------TG-------TTC----TTGATCAGTATCAATAGCGAAATCTATTAAGCTATGTCCGTCTGTCCGTATGAGCCTTATTC------------GT--ATTATACCCGTT-----ACTTAAATCTTATTA-TACGCGT-----------TA----CTT---ACATGGTTTTTAT-------------------------------------ACCCGTTATC--------------------CA------------------TAGAGTATAGGGGTATAT---------------------------------TA--G-------------ATTCGTTAAAAAGTAT-------A--------------------------TAACAGGTAGAAGGACGCGTTTGCGAGCCTATAAAGTG----TACATGTTCTTGA
droBia1	scf7180000301749:16132-16404 +		TCAGTC-------AGAAGCTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAA-----------------------------------------TTATCAGCGTCACTAGACTAGTCGATCTAGCCATGTCCGTCTGTCCGTCTAACCGTCTGTAC-----------GT--C--TGTCGGAAAAAACTTTCAAAACAATTATA-TCTTCG----------GTGTTTTT----TAACATATAACCTAT-------------------------------------AAT--ATATG--------------------TA------------------AGGGTCA-----------------------------------TCCGCTTTTTATTA-------------ATT--TTAATTCGAATTTC---TT--------------------------AAAAATATAAAAAATTTTATTCCCA-ATATAATAGAAT----AGTAAGTTAAAAA
droTak1	scf7180000415395:1444-1637 +		TTA-----------------------------------------------------------TA-----------------TA-------TTC----TTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTTTCTA----C-----------GCAAACTAGTCTCTC-------TAAAAAAATTTT-AGC-TTCG----------GTGTTTTT------TCAAATATTACAT------------------------------------------------------------T--------------------CTACTCTTGGGAAT--------AT--------------------------TATATTTTATATAT---TT----------------CTGAATTTCGAATT--------------------------AAATATGT-AATAAATCGGATC----AC---------------------------
droEle1	scf7180000491045:4033-4318 +		TCAGTC-------AAAAGTTTACAACGCAGTGAAGGAGACGTTT--------ATAATGTAAATA-----------------TA-------TTC----TTGATCAGCATCACTGGGAGAGTCGATCTAGCCATGCCCATCTGTCCGTCCGTTTCTA----C-----------GCAAACTAGTCTCTCA--------------------------GTTTTAAAGC------------------------------TATC----------TTTCCCAAAAGCTGTCTTT-CTATTGCAGGTAGTC--TTTTCTATTTTGT----------------------AATTT-------------TTTTTTAAACTTTTTTTAACTTATTAATAATTTGACA----GTTCAGAATTAC-G---------CTTTAAGTTT--------------------------ATTAAAATCGGAAAACGATATC----ATATAGCT--------------------G
droRho1	scf7180000779695:32620-32848 -		TTGGTC-------AGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCC-----------GT--C--TGTCCGTCT--------------GTTTCA-ATACCGT-----------TT----GTGAGCTCA---GTTTAAAGCTAGCGATCTGAAACTTT--------------------------------------------------------------------------CA----------------------------------CACGCGTCCTA--------------------A--AACATGTGT------------------------------------------------------------AC------GCAG----ATCAAGTTTGAAA
droFic1	scf7180000453937:75621-75678 -		TTTTTC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATC--------------------------AAGCAATTTGAGAAATCTATTC----ACACAGGAGAGC----TTCAAATTCGAGA
droKik1	scf7180000302660:147000-147197 -		TA---------------------------------------------------TAAAGTATATATATTCGTATATATG-TAAA-------TTC----TTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGGA----C---------------------------------AAAAAGTA---T-AAC-TTCG----------TTGTTTTT----CA----ACGTATTT------------------------------------------TCG----------------G--------------------GTACTCTGAGATAT--------ATT---------------------TTATTT-TTTTAGAAT-------------TTTGGTATACATTTTATGAAAATC--------------------------GAACAACT--------------------------------------------AGA
droAna3	scaffold_13099:1282818-1282968 -		TG-------------------------------------------------------------------------------TA-------TTC----TTGTTCAGGATCACCTCCTGAGTAGATATAAGCATGTCCGTCTGACCGCCTGACTGTTTCTAC-----------GGAAACTAGTCTCTCA--------------------------GTTTTAAAGC------------------------------TATCGAGTTGAAACTTTGCACACATCCGTCTTT-TGTCTGCAGGC--------------------TA------------------TAGGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droBip1	scf7180000395239:54262-54398 +		TCGTGT-------GAATGTATGTAACATAGAGAAGGAATCATCTCCGACCCCATAAAGTATATG-----------------TA-------TTC----TAGATCAGCATCAACAGATGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGCCCATCTGTCC-----------GT--A-----------------TTAAA-----------------------GC------------------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_singleton_2165:765-891 -		T--------------------------------------------------------------A-----------------TA-------TTC----TTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCC-----------AT--C--TGTCCGTCC--------------------------GT-----------CC----GTCTGTCCGTCCCCTTCA------------------------------------GCGCCTAATGCT--------------------TA------------------AAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA
droPer2	scaffold_113:144410-144598 +		TTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGCATCAATAGCCAAGTCGATTGAGCCATGTCTATCTGTCCGTCTGTCCGTCCGTCC-----------GT--C--TGTCCGTCC--------------------------GT-----------CT----GTCTGTCCGTCCCTATTA------------------------------------GCGCCGAGTGCT--------------------CA------------------AAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA
droWil2	scf2_1100000004961:357502-357792 -		TCGCCA-------AAACGTATGTAACAGACAGAAGGAAACTTTTCCGACTCCATAAAGTATATA-----------------TA-------TTC----TGGATCAGAATCAACAGCCGATTCGATCTAGCCATGTTCGTCTGTCCGTCCGTCTGAGTTTTA-----------CT--C--A----GCCA--------------------------TCTTAAGATC------------------------------TATCGGAATAT---------------------------------------------------------------------------AATTT-------------TTTTTTGGGTCTTTTT----------------ATTAC--AAGGGTAAGATAAA-GTATGAAGTTTGTCAGGATCGGACCACTGTATCATATAACTCCAGAAGATTTTCATAAAAATTCATAA----AAATTGGAGTATCTCCATGAAATTAACCA
droVir3	scaffold_12875:16305761-16305984 -		TTGTGCAAAATCCAAATGTATGTAACAGGCAGAAAGAAGCATTTCTGACTCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTAT-----------GT--C-----------------GTAA-TTGTGTTTA-GTTC--T-----------TT----TTTCATTTAGCATTATTAC-------------------------------------ATTTCCCATT---------TATTAGT----T--------------------GTTTTAA----------------------------------CTCATGCTTT------------------CTAATCAAC--GTTTTT---------------------------------------------------------------------------------------
droMoj3	scaffold_6540:6684871-6685133 +		TTGTTG-------AAATGTATGTATCAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATA-----------------TA-------TTC----TTGATCAGGGCGAGGAGCTGAGTTGATTTGGCCCTGTCCGTCTGTCTGTCTGTCCGTCTGTCC-----------GT--A--TGTTTGA-----------AC-----------------------GCGTCGATTTC----C---------ATTG------------------------------------AAAATGGG---AAATCATTTTTTTGAGTTGTAATGAAAAATTTATTCAATTATTTTTATT--------TT--------------------------AAGTTCTGATTGGT---TT------CTCGAT-----TTTTATTTAATTT--------------------------AAATTGCTTGAAAAAT---------------------------------------
droGri2	scaffold_15203:10382524-10382600 +		TT------------------------------------------------------------TG-----------------TA-------TTC----TTGATCAGTATCAACAGTCGAGTCGATATGATCTTGTCTGTTCGTCCGTCCATCTGTCTTC--------------T-------------------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCGTTA-------AAAAGTTTGTAACACGTA-----------------------------------------TTTATTTTATA-------TTC----TTGATCAGAATCAATAGTGTAGTCGATCTGGTCATGTCTGTCCGTCCGTATAGCATTCTATCCTG----------T-------------------TTTAAAGTATTTTTA-CTTCCGT-----------TT----TTTTATTCATACGTTTTAT-------------------------------------GTTGACTATT--------------------TA------------------TAGTTTAT----------------------------------ATCGTGTTTTA--T-------------ATTGGTTAACATGTTTTTCAGATT--------------------------AAACAGCTTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTTCGTGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................TTTAT----------------------------------ATCGTGTTTTA--T-------------ATTGGTTAACA..............................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAATCCATTC----ACATAGGAGAAC----.............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................AGTGTAGTCGATCTGGTCATGTCT........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGTCTGTCCGTCCGTATA...........................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................AGTCGATCTGGTCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................	18	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................GTCGATCTGGTCATGT..........................................................................................................................................................................................................................................................................................................................................................................................	16	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................CGATCTGGTCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................A-------TTC----TTGATCAGAATCAAT................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................A-------TTC----TTGATCAGAATCAATA...............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................C----TTGATCAGAATCAAT................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TCGTTA-------AAAAGTTTGTAACACGTA-----------------------------------------TTTATTTTATA-------TTC----TTGATCAGAATCAATAGTGTAGTCGATCTGGTCATGTCTGTCCGTCCGTATAGCATTCTATCCTG----------T-------------------TTTAAAGTATTTTTA-CTTCCGT-----------TT----TTTTATTCATACGTTTTAT-------------------------------------GTTGACTATT--------------------TA------------------TAGTTTTT----------------------------------ATCGTGTTTTATTT-------------ATTGGTTAACATGTTTTTCAGATT--------------------------AAACAGCTTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTTCGTGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TATC-----------------------------------------------------------------------------------------------------------------------------------------------------------CTG----------T-------------------TTTAAAATATTTTTA-TTTCCG----------CTT------TTTATTCATACGTTTTT------------------------------------------ATTAGT--------------------TC------------------TAGTTTTT--------------------------------TGATCGTGTTTAATTT-------------ATTGGTTAAAATATTTTTCAGATT--------------------------AAACAACTTGAAAAATCCATTC----ATATAGGAGAAT----TGCAAGTTCGTGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................GATCGTGTTTAATTT-------------ATTGGT...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ATTAGT--------------------TC------------------TAGTTTTT--------------------------------TGATC.................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGAGAAT----TGCAAGTTCGTGA	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TTTTT--------------------------------TGATCGTGTTTAATTT-------------ATTGGT...................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TTTAATTT-------------ATTGGTTAAG...............................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTGCTG-------ACACAACTACGGCACCTGACAAGTACCAG----------------------------------ATTTGTACTATTTTTTCTTAACCGTACTCACACAAA-----------------------------------T------------------------------------------------------------------A-----------TT----ATTTATTAATTTGCTTTAT-------------------------------------GT-----------------------------C------------------AAGAAA------------------------------------ATCGACTGTTATTA-------------ATTGTTAAACATTATTTTCAGATT--------------------------AAACAAATTGAAAAATCCATTC----ACATAGGAGAAC----TTCAAGTCCGTGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC----ACATAGGAGAAC----TTCAAGTCCGTGA	28	1	1.00	1	1	0	0	0	0	0	0

droYak3

ACAAGT-------ACGGCTACCTAACAAGTACTATTTTA------------------------------------------TT-------TAA----CTGTACTCACACAAT-----------------------------------TTGCATTCATTCCTGTGGTTGTACTT-------------------TTTTAAGTATTTCAA-C---CCT-----------TT----TTTTATTTATTTGTTTTAT-------------------------------------AT-----------------------------CGAGGAAATCGATTATTTTTCTTTATT--------------------------------TGATCGTGTTTTATTA-------------ATTGGTAATCATGTTTTTCAGATT--------------------------AAACAAATTGAAAAATCCATTC----ACATAGGAGAAC----TGCAAGTCCGTGA

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

TCGTTA-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTGCGAGCCTATAAAGTATACA-----------------TG-------TTC----TTGATCAGTATCAATAGCGAAATCTATTAAGCTATGTCCGTCTGTCCGTATGAGCCTTATTC------------GT--ATTATACCCGTT-----ACTTAAATCTTATTA-TACGCGT-----------TA----CTT---ACATGGTTTTTAT-------------------------------------ACCCGTTATC--------------------CA------------------TAGAGTATAGGGGTATAT---------------------------------TA--G-------------ATTCGTTAAAAAGTAT-------A--------------------------TAACAGGTAGAAGGACGCGTTTGCGAGCCTATAAAGTG----TACATGTTCTTGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCAGTC-------AGAAGCTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAA-----------------------------------------TTATCAGCGTCACTAGACTAGTCGATCTAGCCATGTCCGTCTGTCCGTCTAACCGTCTGTAC-----------GT--C--TGTCGGAAAAAACTTTCAAAACAATTATA-TCTTCG----------GTGTTTTT----TAACATATAACCTAT-------------------------------------AAT--ATATG--------------------TA------------------AGGGTCA-----------------------------------TCCGCTTTTTATTA-------------ATT--TTAATTCGAATTTC---TT--------------------------AAAAATATAAAAAATTTTATTCCCA-ATATAATAGAAT----AGTAAGTTAAAAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTA-----------------------------------------------------------TA-----------------TA-------TTC----TTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTTTCTA----C-----------GCAAACTAGTCTCTC-------TAAAAAAATTTT-AGC-TTCG----------GTGTTTTT------TCAAATATTACAT------------------------------------------------------------T--------------------CTACTCTTGGGAAT--------AT--------------------------TATATTTTATATAT---TT----------------CTGAATTTCGAATT--------------------------AAATATGT-AATAAATCGGATC----AC---------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAGTC-------AAAAGTTTACAACGCAGTGAAGGAGACGTTT--------ATAATGTAAATA-----------------TA-------TTC----TTGATCAGCATCACTGGGAGAGTCGATCTAGCCATGCCCATCTGTCCGTCCGTTTCTA----C-----------GCAAACTAGTCTCTCA--------------------------GTTTTAAAGC------------------------------TATC----------TTTCCCAAAAGCTGTCTTT-CTATTGCAGGTAGTC--TTTTCTATTTTGT----------------------AATTT-------------TTTTTTAAACTTTTTTTAACTTATTAATAATTTGACA----GTTCAGAATTAC-G---------CTTTAAGTTT--------------------------ATTAAAATCGGAAAACGATATC----ATATAGCT--------------------G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGGTC-------AGAAGTTTGTAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGGATCAATAGGGGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGTCC-----------GT--C--TGTCCGTCT--------------GTTTCA-ATACCGT-----------TT----GTGAGCTCA---GTTTAAAGCTAGCGATCTGAAACTTT--------------------------------------------------------------------------CA----------------------------------CACGCGTCCTA--------------------A--AACATGTGT------------------------------------------------------------AC------GCAG----ATCAAGTTTGAAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTTC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATC--------------------------AAGCAATTTGAGAAATCTATTC----ACACAGGAGAGC----TTCAAATTCGAGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TA---------------------------------------------------TAAAGTATATATATTCGTATATATG-TAAA-------TTC----TTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGGA----C---------------------------------AAAAAGTA---T-AAC-TTCG----------TTGTTTTT----CA----ACGTATTT------------------------------------------TCG----------------G--------------------GTACTCTGAGATAT--------ATT---------------------TTATTT-TTTTAGAAT-------------TTTGGTATACATTTTATGAAAATC--------------------------GAACAACT--------------------------------------------AGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TG-------------------------------------------------------------------------------TA-------TTC----TTGTTCAGGATCACCTCCTGAGTAGATATAAGCATGTCCGTCTGACCGCCTGACTGTTTCTAC-----------GGAAACTAGTCTCTCA--------------------------GTTTTAAAGC------------------------------TATCGAGTTGAAACTTTGCACACATCCGTCTTT-TGTCTGCAGGC--------------------TA------------------TAGGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................CCTCCTGAGTAGATATAAGCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................ATCGAGTTGAAACTTTGCACA.............................................................................................................................................................................................................................................	21	20	0.25	5	5	0	0	0	0	0

droBip1

TCGTGT-------GAATGTATGTAACATAGAGAAGGAATCATCTCCGACCCCATAAAGTATATG-----------------TA-------TTC----TAGATCAGCATCAACAGATGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGCCCATCTGTCC-----------GT--A-----------------TTAAA-----------------------GC------------------------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

T--------------------------------------------------------------A-----------------TA-------TTC----TTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCCGTCCGTCTGTCC-----------AT--C--TGTCCGTCC--------------------------GT-----------CC----GTCTGTCCGTCCCCTTCA------------------------------------GCGCCTAATGCT--------------------TA------------------AAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................CGATTGAGCCATGTCTGTCTG...................................................................................................................................................................................................................................................................................................................................................................................	21	20	2.25	45	0	45	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGTCCGTCCCCTTCA------------------------------------GCGCCT............................................................................................................................................................................................................................	21	20	1.05	21	0	21	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CCCCTTCA------------------------------------GCGCCTAATGCT--------------------T.................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................TCCGTCC--------------------------GT-----------CC----GTCTGTCC................................................................................................................................................................................................................................................................................	19	20	0.45	9	0	9	0	0	0	0	0	0	0	0
............................................................................................................................TGAGCCATGTCTGTCTGTCCG...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	0	0	0	5	2	0
............................................................................................................................................................GTCC-----------AT--C--TGTCCGTCC--------------------------GT-----------CC----GTA.....................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................GTCTGTCCGTCCCCTTCA------------------------------------GC................................................................................................................................................................................................................................	20	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CC----GTCTGTCCGTCCCCTTCA------------------------------------..................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TCTGTCCGTCCCCTTCA------------------------------------GC................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTCC--------------------------GT-----------CC----GTCTGTCCGTCCC...........................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGTCCGTCCCCTTCA------------------------------------GCG...............................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................TCGATTGAGCCATGTCTGTCTG...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................T--C--TGTCCGTCC--------------------------GT-----------CC----GTCT....................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	2
.............................................................................................................................................TCCGTCCGTCCGTCTGTCC-----------A....................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................TA-------TTC----TTGATCAGCATCAATAGCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................CGTCC--------------------------GT-----------CC----GTCTGTCCGTC.............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
............................................................................................C----TTGATCAGCATCAATAGCC............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................TGAGCCATGTCTGTCTGT..................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGTCCGTCC--------------------------GT-----------CC----GTCTGTCCGTCCC...........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................TCTGTCTGTCCGTCCGTCC........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................TGTCTGTCCGTCCGTCCGT......................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

TTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGCATCAATAGCCAAGTCGATTGAGCCATGTCTATCTGTCCGTCTGTCCGTCCGTCC-----------GT--C--TGTCCGTCC--------------------------GT-----------CT----GTCTGTCCGTCCCTATTA------------------------------------GCGCCGAGTGCT--------------------CA------------------AAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................CGTCCAGAAGGAATCGTTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	1.80	36	0	0	0	0	0	36
................TGTGTGTAACGTCCAGAAGGAATCGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.50	10	0	10	0	0	0	0
............................................................................................................................TGAGCCATGTCTATCTGTCCGTCTG...........................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.......GAAAATGGATGTGTGTAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	0	5
...........................................................................................TC----TTGATCAGCATCAATAGCCAAGTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0
...........................................................................................TC----TTGATCAGCATCAATAGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	3	0	0	0	0
.........AAATGGATGTGTGTAACGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
...............................................................................................................................................................C-----------GT--C--TGTCCGTCC--------------------------GT-----------CT----GTC.....................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0
.....................................................................................................TCAGCATCAATAGCCAAGTCG......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................................................................................CC--------------------------GT-----------CT----GTCTGTCCGTCCC...........................................................................................................................................................................................................................................................................	19	20	0.10	2	0	1	0	1	0	0
...................................................................................................................CAAGTCGATTGAGCCATGTCT........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
...........................................................................................TC----TTGATCAGCATCAATAGCCAAGTCG......................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
.........................................................................................................CATCAATAGCCAAGTCGATTG..................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
....................................................................................................................AAGTCGATTGAGCCATGTCT........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................................................................AAGTCGATTGAGCCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................TCCGTCC-----------GT--C--TGTCCGTCC--------------------------GT-----------CT----GT......................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
........................................................................................................GCATCAATAGCCAAGTCGATT...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCAAGTCGAT....................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
..........................................................................................................ATCAATAGCCAAGTCGATTGA.................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
............................................................................................C----TTGATCAGCATCAATAGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................AGCATCAATAGCCAAGTCGAT....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
....................................................................................................ATCAGCATCAATAGCCAAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...........................................................................................TC----TTGATCAGCATCAATAGCCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................GCCAAGTCGATTGAGCCATGT..........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCAAGTCGATT...................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCAAGT........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droWil2

TCGCCA-------AAACGTATGTAACAGACAGAAGGAAACTTTTCCGACTCCATAAAGTATATA-----------------TA-------TTC----TGGATCAGAATCAACAGCCGATTCGATCTAGCCATGTTCGTCTGTCCGTCCGTCTGAGTTTTA-----------CT--C--A----GCCA--------------------------TCTTAAGATC------------------------------TATCGGAATAT---------------------------------------------------------------------------AATTT-------------TTTTTTGGGTCTTTTT----------------ATTAC--AAGGGTAAGATAAA-GTATGAAGTTTGTCAGGATCGGACCACTGTATCATATAACTCCAGAAGATTTTCATAAAAATTCATAA----AAATTGGAGTATCTCCATGAAATTAACCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATAA----AAATTGGAGTATCTCCATG..........	25	4	0.25	1	0	1	0	0	0
..........................................................................................................................................................GTTTTA-----------CT--C--A----GCCA--------------------------TCTTAAGATC------------------------------...................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAA----AAATTGGAGTATCTCCA............	24	5	0.20	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCGGACCACTGTATC....................................................................	20	16	0.13	2	2	0	0	0	0
................................................................................................................................CCATGTTCGTCTGTCCGTCCGTC.........................................................................................................................................................................................................................................................................................................................................................................	23	19	0.11	2	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGGACCACTGTATC....................................................................	18	20	0.10	2	2	0	0	0	0
.......................................................................................................................TCGATCTAGCCATGTTCGTCTGTCCG...............................................................................................................................................................................................................................................................................................................................................................................	26	16	0.06	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCGGACCACTGTATCAT..................................................................	21	17	0.06	1	0	1	0	0	0
.................GTATGTAACAGACAGAAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0

droVir3

TTGTGCAAAATCCAAATGTATGTAACAGGCAGAAAGAAGCATTTCTGACTCCATAAAGTATATA-----------------TA-------TTC----TTGATCAGCATCAATAGCCGAGTCGATCTAGCCATGTCCGTCTGTCTGTCCGTCCGTCCGTAT-----------GT--C-----------------GTAA-TTGTGTTTA-GTTC--T-----------TT----TTTCATTTAGCATTATTAC-------------------------------------ATTTCCCATT---------TATTAGT----T--------------------GTTTTAA----------------------------------CTCATGCTTT------------------CTAATCAAC--GTTTTT---------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..........TCCAAATGTATGTAACAGGCAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	1.70	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	4	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCCAAATGTATGTAACAGGCAGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCCAAATGTATGTAACAGGCAGAAAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCAATAGCCGAGTCGATCTAGCCATGT..........................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TCCGTCTGTCTGTCCGTCCGTCC....................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................CCGTCTGTCTGTCCGTCCGTCCGT..................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TCAATAGCCGAGTCGATCTAGCCATG...........................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CCAAATGTATGTAACAGGCAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCCAAATGTATGTAACAGGCAGAAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AGTCGATCTAGCCATGTCCGTCTG...................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATGTATGTAACAGGCAGAAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AATGTATGTAACAGGCAGAAAGAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................CAATAGCCGAGTCGATCTAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TTGATCAGCATCAATAGCCGAGTCGATC...................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TATA-----------------TA-------TTC----TTGATCAGCATCAAT................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCCGAGTCGATCTAGCCATGTCC........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................GATCAGCATCAATAGCCGAGTCGATC...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TCCGTCTGTCTGTCCGTCCGTCCG...................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CGATCTAGCCATGTCCGTCTGT..................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAGCCGAGTCGATCTAGCCATGT..........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGTTG-------AAATGTATGTATCAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATA-----------------TA-------TTC----TTGATCAGGGCGAGGAGCTGAGTTGATTTGGCCCTGTCCGTCTGTCTGTCTGTCCGTCTGTCC-----------GT--A--TGTTTGA-----------AC-----------------------GCGTCGATTTC----C---------ATTG------------------------------------AAAATGGG---AAATCATTTTTTTGAGTTGTAATGAAAAATTTATTCAATTATTTTTATT--------TT--------------------------AAGTTCTGATTGGT---TT------CTCGAT-----TTTTATTTAATTT--------------------------AAATTGCTTGAAAAAT---------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................ATGTATCAGGCAGAAGGAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	1	0
.....................GTATCAGGCAGAAGGAGGCGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	1
.....................GTATCAGGCAGAAGGAGGCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	1	0
.....................GTATCAGGCAGAAGGAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	1
.......................ATCAGGCAGAAGGAGGCGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	1
........................TCAGGCAGAAGGAGGCGTGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................TCTGTCC-----------GT--A--TGTTTGA-----------AC-----------------------G..................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................CTGAGTTGATTTGGCCCTGT..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................TCTGTCTGTCCGTCTGTCC-----------GT--.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................GAGGCGTGGCAGACCCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
....................................................................................................................GAGTTGATTTGGCCCTGT..........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...............................GAAGGAGGCGTGGCAGACCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
.........................................................................................................................................TCTGTCTGTCTGTCCGTCTGTC.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droGri2

TT------------------------------------------------------------TG-----------------TA-------TTC----TTGATCAGTATCAACAGTCGAGTCGATATGATCTTGTCTGTTCGTCCGTCCATCTGTCTTC--------------T-------------------ATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_24310

node_4650:4443-4592 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-16.5	-16.2	-16.1