ID:

dsi_24290

 Coordinate:

3l:7185688-7185766 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.1

Flybase annnotation

exon [3l_7184895_7185687_+]; CDS [3l_7184895_7185687_+]; CDS [3l_7185767_7185953_+]; exon [3l_7185767_7186066_+]; intron [3l_7185688_7185766_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------##################################################
TTCGCGCTCTTTGGACAGTATACACGTCGTCCCGAGCTGCTCTTCAAGCGGTGAGTCATCTCTGCATATGTAGCTTTGGTGCAAAATAAACATAAATCTGACACCTTTCACTCCCATTCGATTCGCCAGAACACACGATGCCTGCAAGCTGCTGGCGGCGGCACGAGGAACAGCTTTGT
**************************************************((((...(((.........((......((((((...............)).))))....))........)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
..CGCGCTCTTTGGACAGTA............................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
................AGTATACACGTCGTCCCG................................................................................................................................................. 18 0 1 2.00 2 0 0 0 2 0 0 0 0
...........TGGACAGTATACACGTCGTCCCGAGC.............................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...............CAGTATACACGTCGTCCCGAG............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................TCTGCATATGTAGCTTTG..................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0
...................ATACACGTCGTCCCGAGCTGCT.......................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..........TTGGACAGTATACACGTCGTCCCGAGC.............................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................CTGCAAGCTGCTGGCGAC.................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................TCTTCCCGAGCTGCTCT........................................................................................................................................ 17 1 1 1.00 1 0 0 0 0 1 0 0 0
............................................................TCTGCATATGTAGCT........................................................................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0 0
.....................................TGCTCTTCAAGCGGT............................................................................................................................... 15 0 14 0.14 2 0 2 0 0 0 0 0 0
............................TTCCCGAGCTGGTCTCCAAG................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0
...........TGGACGGTATAGACGTCGG..................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0
...........TGGACTGTAAACACGTCGG..................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0
.........................GTCTGCCCGAGCTGCTCT........................................................................................................................................ 18 2 12 0.08 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................CCGGCACGACGAACAGC..... 17 2 13 0.08 1 0 0 0 0 0 0 0 1
....................................CTGCTCTTCAAGCGGT............................................................................................................................... 16 0 14 0.07 1 0 1 0 0 0 0 0 0
....................................CTGCTCTTCAAGCGG................................................................................................................................ 15 0 15 0.07 1 0 0 0 0 0 0 0 1
.................................GAGCGACTCTTCAAGCG................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AAGCGCGAGAAACCTGTCATATGTGCAGCAGGGCTCGACGAGAAGTTCGCCACTCAGTAGAGACGTATACATCGAAACCACGTTTTATTTGTATTTAGACTGTGGAAAGTGAGGGTAAGCTAAGCGGTCTTGTGTGCTACGGACGTTCGACGACCGCCGCCGTGCTCCTTGTCGAAACA
**************************************************((((...(((.........((......((((((...............)).))))....))........)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
......................GTGCAGCAGGGCTCGACGAGAA....................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
................................................................................................................GGGTAAGCTAAGCGGTCTTGT.............................................. 21 0 1 1.00 1 0 0 1 0 0
..............................................................................................TTAGACTGTGGGAAGTGAGGGT............................................................... 22 1 1 1.00 1 1 0 0 0 0
...................................................................................TTTATTTGGATTTAGACT.............................................................................. 18 1 7 0.43 3 0 3 0 0 0
.................CATATGGCCGGCAGGGCTC............................................................................................................................................... 19 3 3 0.33 1 0 0 0 1 0
...................................................................................TTTATTTGGATTTAGAC............................................................................... 17 1 9 0.33 3 0 3 0 0 0
..................................................................................TTTTATTTGGATTTAGAC............................................................................... 18 1 5 0.20 1 0 1 0 0 0
...................................................................................TTCATTTGGATTTAGACT.............................................................................. 18 2 17 0.18 3 0 3 0 0 0
....................................................................................TTATTTGGATTTAGACT.............................................................................. 17 1 8 0.13 1 0 1 0 0 0
...........................GCAGGGCTCGACCGGAA....................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0
..................................................................................TTTTATTTGGATTTAGA................................................................................ 17 1 10 0.10 1 0 1 0 0 0
.....................................ACGAGAAGTTCGCCA............................................................................................................................... 15 0 14 0.07 1 0 1 0 0 0
..................................................................................TTTTATTTGGATTTAGACA.............................................................................. 19 2 19 0.05 1 0 0 0 0 1
...................................................................................TTTATTTGGATTTAGA................................................................................ 16 1 19 0.05 1 0 1 0 0 0

Generated: 04/23/2015 at 07:26 PM