ID:

dsi_24288

 Coordinate:

3l:11465064-11465237 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.0 -12.8 -12.8 -12.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_24288  3l:11465143-11465162 -
  2. dsi_24866  3l:11465941-11465960 -
  3. node_48872:99-118 -
  4. node_65520:134-153 -
star
  1. dsi_24288  3l:11465104-11465129 -
  2. dsi_24288  3l:11465203-11465228 -
  3. dsi_24666  3l:11465698-11465723 -
  4. dsi_24666  3l:11465902-11465927 -
  5. node_48872:60-85 -

Sense Strand Reads

TGAGATATCTCAGTCCTCTACAGAACCTTCACAAGATAGTACGACACAAGAAAGTAGCTCTAGCACTGAAGGTCCTTTGTCTACTGAATCATCTTCAGAAGCTAATGAGTCTTCCTCTACAGAATCTTCACAAGATAGTACGACTCAAGAAAGTAGCTCTAGCACTGAAGGTCCTTTGTCTACTGAATCATCTACAGAACCTTCTAATGAGTCTTCCTCTACAGAATCTTCACAAGATAGTACGACCCAAGAAAGTAGCTCTAGCACTGAAGGT
***********************************************************..........((.......((((..(((....(((...((((((....)).))))......)))....)))..)))).......))********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 M025
embryo
 O001
Testis
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae
...........................................................................................................................................................GTTCTAGCATTCAAGGTCC.................................................................................................... 19 3 16 36.69 587 350 209 12 10 3 0 0 2 0 0 1
........................................................GTTCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 19 3 16 36.69 587 350 209 12 10 3 0 0 2 0 0 1
.............................................................................................................................CTTCACAAGATAGTACGACT................................................................................................................................. 20 0 4 6.00 24 24 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCACAAGATAGTACGACT................................................................................................................................. 18 0 4 4.25 17 16 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................TCAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................ 26 0 4 1.75 7 7 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CAAGAAAGTAGCTCTAGCACT...... 21 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0
............................................CACAAGAAAGTAGCTCTAGC.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGAAAGTAGCTCTAGCACT............................................................................................................ 21 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0
............GTCCTCTACAGAACCTTCACAAGATAG........................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................CAAGAAAGTAGCTCTAGCACT............................................................................................................................................................................................................... 21 0 7 1.00 7 7 0 0 0 0 0 0 0 0 0 0
.............................................ACAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACTCAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................ 28 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCACAAGATAGTACGACTCAAGAAAGT........................................................................................................................ 27 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTCACAAGATAGTACGACT................................................................................................................................. 19 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCAAGAAAGTAGCTCTAGC............................................................................................................... 20 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
..........................CTTCACAAGATAGTACGACAC................................................................................................................................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................CTAGCACTGAAGGTCCTTTGTCTACT............................................................................................................................................................................................. 26 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0
......................................................................GGTCCTTTGTCTACTGAATCATCT.................................................................................................................................................................................... 24 0 5 0.60 3 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................................................................GATAGTACGACTCAAGAAAGTAGCT.................................................................................................................... 25 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTCCTTTGTCTACTGAAT...................................................................................... 18 0 5 0.60 3 2 1 0 0 0 0 0 0 0 0 0
.......................................................................GTCCTTTGTCTACTGAAT......................................................................................................................................................................................... 18 0 5 0.60 3 2 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGTCCTTTGTCTACTGAATCATCT................................................................................. 24 0 5 0.60 3 0 0 0 0 3 0 0 0 0 0 0
..............................................................................................................................................................CTAGCACTGAAGGTCCTTTGTCTACT.......................................................................................... 26 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCACAAGATAGTACGACC........................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCAAGAAAGTAGCTCTAGCACT............................................................................................................ 23 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACAGAATCTTCACAAGATAGTACGACTC................................................................................................................................ 28 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................GTACGACCCAAGAAAGTAGCT.............. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CAAGATAGTACGACCTAAG....................... 19 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................GACCCAAGAAAGTAGCTCTAGCACT...... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCAAAAGATAGTACGACC........................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........CGTCCTCTACAGAACCTTCACAAG............................................................................................................................................................................................................................................... 24 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................CTTCACAAGATAGTACGACTCAAG............................................................................................................................. 24 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CCAAGAAAGTAGCTCTAGCACTGAA... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CGACCTAAGAAAGTAGCTCTAGCACT...... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GACTCAAGAAAGTAGCTCTAGCACT............................................................................................................ 25 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................GTAGCTCTAGCACTGAAG........................................................................................................................................................................................................... 18 0 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................GTAGCTCTAGCACTGAAG.. 18 0 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GTAGCTCTAGCACTGAAG........................................................................................................ 18 0 7 0.43 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................CTAGCACTGAAGGTCCTTTGTCTACTG............................................................................................................................................................................................ 27 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................ATAGTACGACTCAAGAAAGTAGCT.................................................................................................................... 24 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTACGACTCAAGAAAGT........................................................................................................................ 18 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTCCTTTGTCTACTGAATC..................................................................................... 19 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GAAGGTCCTTTGTCTACTGAATC..................................................................................... 23 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTAGCACTGAAGGTCCTTTGTCTACTG......................................................................................... 27 0 5 0.40 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................GATAGTACGACTCAAGAAAGT........................................................................................................................ 21 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................GTCCTTTGTCTACTGAATC........................................................................................................................................................................................ 19 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................GAAGGTCCTTTGTCTACTGAATC........................................................................................................................................................................................ 23 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0 0
.............................CACAAGATAGTACGACACAAG................................................................................................................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................................ATAGTACGACACAAGAAAGTAGCT....................................................................................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................GATAGTACGACACAAGAAAGGAGCT....................................................................................................................................................................................................................... 25 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..............................................CAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................................................................................................................... 25 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GAAAGTAGCTCTAGCACT...... 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
...............................................AAGAAAGTAGCTCTAGCACTGAAGGTCC....................................................................................................................................................................................................... 28 0 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGTAGCTCTAGCACTGAAG.. 19 0 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TAATGAGTCTTCCTCTACAGAATC.................................................................................................................................................... 24 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAATGAGTCTTCCTCTACAGAATC.............................................. 24 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGAAAGTAGCTCTAGC............................................................................................................... 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGTAGCTCTAGCACTGAAG........................................................................................................ 20 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................ 25 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GAAAGTAGCTCTAGCACT............................................................................................................ 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGAAAGTAGCTCTAGCACTGAAGGTCC.................................................................................................... 28 0 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0
....................................................AGTAGCTCTAGCACTGAAG........................................................................................................................................................................................................... 19 0 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0
.................................................GAAAGTAGCTCTAGCACT............................................................................................................................................................................................................... 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................AAGTAGCTCTAGCACTGAAG.. 20 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CAAGAAAGTAGCTCTAGCACTGAAG.. 25 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CAAGAAAGTAGCTCTAGC......... 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGTAGCTCTAGCACTGAAG........................................................................................................ 19 0 7 0.29 2 1 0 1 0 0 0 0 0 0 0 0
..............................................CAAGAAAGTAGCTCTAGC.................................................................................................................................................................................................................. 18 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
...................................................AAGTAGCTCTAGCACTGAAG........................................................................................................................................................................................................... 20 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACTCAAGAAAGTAGCTCTAGCACTG........................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GACTCAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................ 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAGATAGTACGACTCAAGAAAGC........................................................................................................................ 23 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGTACGACTCAAGAAAGTAGCTCTA................................................................................................................. 26 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................GATAGTACGACTCAAGAAAGAAGCTCT.................................................................................................................. 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTGTCTACTGAATCATCTACAGAACCT........................................................................ 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CACAAGATAGTACGACTCAAGA............................................................................................................................ 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AATCTTCACAAGATAGTACGACT................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTGTCTACTGAATCATCTACAGAAC.......................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCAAGAAAGTAGCTCTAGCACTGAAG........................................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCAAGAAAGTAGCTCTAGCACTGAA......................................................................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCTTTGTCTACTGAATCATCTACAGAAC.......................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CAGAATCTTCACAAGATAGTACGACT................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTCAAGAAAGTAGCTCTAGCAC............................................................................................................. 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TCTTCACAAGATAGTACGACTCAAGA............................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CAAGATAGTACGACTCAAGAA........................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GACTCAAGAAAGTAGCTCTAGCACC............................................................................................................ 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ATCTTCACAAGATAGTACGACTC................................................................................................................................ 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGTACGACTCAAGAAAGTAGCTCT.................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTCTACTGAATCATCTACAGAACCTGCT..................................................................... 28 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTACGACTCAAGAAAGTAGCTCTAGC............................................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTGTCTACTGAATCATCTACAGAAC.......................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GCTCTAGCATTCAAGGTC..................................................................................................... 18 2 9 0.22 2 1 1 0 0 0 0 0 0 0 0 0
........................................................GCTCTAGCATTCAAGGTC........................................................................................................................................................................................................ 18 2 9 0.22 2 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTGAAGGTCCTTTGTCTACTGAA....................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACTGAAGGTCCTTTGTCTACTG......................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTGAAGGTCCTTTGTCTACTGAC....................................................................................... 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................GAAGGTCCTTTGTCTACTGAATCAT...................................................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACGACTCAAGAAAGTAGCT.................................................................................................................... 19 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................ACTGAAGGTCCTTTGTCTACTGAATC........................................................................................................................................................................................ 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AGATAGTACGACTCAAGAAAGTAGCT.................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TGAAGGTCCTTTGTCTACTGAAT......................................................................................................................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTACGACTCAAGAAAGTAGCT.................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GATAGTACGACTCAAGAAAA......................................................................................................................... 20 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................AGCACTGAAGGTCCTTTGTCTACTG............................................................................................................................................................................................ 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................AGCACTGAAGGGCCTTTGTCTACTG............................................................................................................................................................................................ 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCTTTGTCTACTGAATCATCT................................................................................. 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................CCTTTGTCTACTGAATCATCT.................................................................................................................................................................................... 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGCACTGAAGGGCCTTTGTCTACTG......................................................................................... 25 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTACGACTCAAGAAAGTAGCC.................................................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTGAAGGTCCTTTGTCTACTGAATCATC.................................................................................. 28 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CTGAAGGTCCTTTGTCTACTGAAT......................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AGATAGTACGACTCAAGAAAGT........................................................................................................................ 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGAAGGTCCTTTGTCTACTGAAT...................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GATAGTACGACTCAAGAAAG......................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CTGAAGGTCCTTTGTCTACTGAA.......................................................................................................................................................................................... 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GAAGGTCCTTTGTCTACTGAATCAT................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................ACTGAAGGTCCTTTGTCTACTG............................................................................................................................................................................................ 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CTGAAGGTCCTTTGTCTACTGAC.......................................................................................................................................................................................... 23 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTGAAGGTCCTTTGTCTACTGAAT...................................................................................... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGCACTGAAGGTCCTTTGTCTACTG......................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AGATAGTACGACTCAAGAA........................................................................................................................... 19 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................CTGAAGGTCCTTTGTCTACTGAATCATC..................................................................................................................................................................................... 28 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................ACTGAAGGTCCTTTGTCTACTGAATC..................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATAGTACGACTCAAGAAAGT........................................................................................................................ 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................GTAGCTCTAGCACTGAAGGTCCTTTGT.................................................................................................................................................................................................. 27 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................GTAGCTCTAGCACTGAAGGTCCTTTGTC................................................................................................................................................................................................. 28 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATCATCTACAGAACCTTCTAATGAGTCT............................................................ 28 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................GTAGCTCTAGCACTGAAGGTCCTTTGT............................................................................................... 27 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.........TCAGTGCACTACAGAACC....................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................GTAGCTCTAGCACTGAAGGTCCTTTGTC.............................................................................................. 28 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GCTCTAGCATTCAAGGTCC.................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGAAAGTAGCTCTAGCACT............................................................................................................ 20 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CAAGAAAGTAGCTCTAGCACTGACG.. 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CTACAGAACCTTCTAATGAGT.............................................................. 21 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGAAAGTAGCTCTAGCACTGAAGGTC..................................................................................................... 28 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAAGAAAGTAGCTCTAGCACTGACG........................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTCTTCCTCTACAGAATCT............................................. 19 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
..............................................CAAGAAAGTAGCTCTAGCACTGAAGGTC........................................................................................................................................................................................................ 28 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATGAATCTTCCTCTACAGA................................................. 19 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATCTACAGAACCTGCTAATGAATCTTCCT........................................................ 29 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AAGAAAGTAGCTCTAGCACT...... 20 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
...............................................AAGAAAGTAGCTCTAGCACT............................................................................................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACAGAACCTTCTAATGAGT.............................................................. 19 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GTCTTCCTCTACAGAATCT................................................................................................................................................... 19 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATGAGTCTTCCTCTACAGAATCTT............................................ 25 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CTACAGAACCTTCTAATGA................................................................ 19 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
..............................................CAAGAAAGTAGCTCTAGCACTGACG........................................................................................................................................................................................................... 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATGAATCTTCCTCTACAGA....................................................................................................................................................... 19 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................AATGAGTCTTCCTCTACAGAATCT................................................................................................................................................... 24 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................AATGAGTCTTCCTCTACAGAATCTT.................................................................................................................................................. 25 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATGAGTCTTCCTCTACAGAATCT............................................. 24 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
........................................................GCTCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATCTACAGAACCTTCTAATGAGT.............................................................. 23 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGAATCATCTACAGAACCTTCTAA................................................................... 24 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................CTACTGAATCATCTACAGAACCTT....................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGCTCTAGCATTCAAGGTCC.................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTACTGAATCATCTACAGG............................................................................ 19 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTACTGAATCATCTACAG............................................................................. 18 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTACTGAATCATCTACAGA............................................................................ 19 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
........................................................GTTCTAGCACTCAAGGTC........................................................................................................................................................................................................ 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................CGCTCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTTCTAGCACTCAAGGTC..................................................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................CTACTGAATCATCTGCAGA............................................................................................................................................................................... 19 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CTACTGAATCATCTGCAGA............................................................................ 19 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCTAGCATTCAAGGTCC.................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................TCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................GATCTAGCATTCAAGGTCC.................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
........................................................GATCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTTCTAGCATTAAAGGTCC.................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
........................................................GTTCTAGCATTAAAGGTCC....................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GACGCAAGAAGGTAGCT.............. 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
..........................................GACGCAAGAAGGTAGCT....................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................GACGCAAGAAGGTAGCT.................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................CTCTAGCATTCAAGGTCCC...................................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CTCTAGCATTCAAGGTCCC................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GTCTAGCATTCAAGGTCC....................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTCTAGCATTCAAGGTCC.................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACTCTATAGAGTCAGGAGATGTCTTGGAAGTGTTCTATCATGCTGTGTTCTTTCATCGAGATCGTGACTTCCAGGAAACAGATGACTTAGTAGAAGTCTTCGATTACTCAGAAGGAGATGTCTTAGAAGTGTTCTATCATGCTGAGTTCTTTCATCGAGATCGTGACTTCCAGGAAACAGATGACTTAGTAGATGTCTTGGAAGATTACTCAGAAGGAGATGTCTTAGAAGTGTTCTATCATGCTGGGTTCTTTCATCGAGATCGTGACTTCCA
*********************************************************************************************************************************..........((.......((((..(((....(((...((((((....)).))))......)))....)))..)))).......))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O001
Testis
 M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
.............................................TGTTCTGCCATCGAGATCGTGT............................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................TCTTGGAAGTGTTATATCAAGAT...................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................AGGAAACAGATGACTTAGTAGA.................................................................................................................................................................................... 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCAGAAAACAGATGACTTAGTAGA................................................................................. 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGGAAACAGATGACTTAGTAGA................................................................................. 22 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................CCAGAAAACAGATGACTTAGTAGA.................................................................................................................................................................................... 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CCGAAGACTTTGTAGATGTC............................................................................. 20 3 16 0.19 3 0 0 0 0 1 0 0 2 0 0 0
........................................................CGAGATCGTGACTACCAGGAAACAGA................................................................................................................................................................................................ 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CGAGATCGTGACTACCAGGAAACAGA............................................................................................. 26 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................GTACCATCATGCCGAGTTCT............................................................................................................................ 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATGACTTAGTAGATGTCTTGGAAGAT.................................................................... 26 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GAGATGTCTTAGAAGTGTTCTAT......................................................................................................................................... 23 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAGATGTCTTAGAAGTGTTCTAT................................... 23 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGACTTAGTAGATGTCTCGGACGATT................................................................... 26 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................ATTCCTTAGAAGGAGATG.......................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................ATTCCTTAGAAGGAGATG.................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................TTAGTAGATGCCTTGG......................................................................... 16 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATCGAGATGGTGACT.......................................................................................................... 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
......................................................ATCGACGTCGTGACTTCC.......................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATCGACGTCGTGACTTCC. 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
......................................................ATCGAGATGGTGACT............................................................................................................................................................................................................. 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATCGAGATGGTGACT.... 15 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATCGACGTCGTGACTTCC....................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................ATGTTGGGGTCTTTCGTCGA.............. 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................ACGCAGAAGGAGATGTAAT................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................AATCGACGTCGTGACTTCC....................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................TCGACGTCGTGACTTCCCG........................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................AGGGGATGTCATAGCAGT................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................ACGCAGAAGGAGATGTAAT...................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................AATCGACGTCGTGACTTCC.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 08:56 AM