ID:

dsi_24259

Coordinate:

3l:8030095-8030244 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-24.3	-24.2	-24.0

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(TAAAA)n	Simple_repeat	Simple_repeat	+

mature

star

Sense Strand Reads

GCGGGGTGGAGGAGGGTATCTCCTCCGCTTGCCACTTCAAGGTGCAAAATGTACGACGTGCGTCGTTCCGTACATCATCGCATGCTTTGTGCTCTCAGCACTGAAATCTTTTACAATCAACATGAAGCAGCAGCAAAGCAATTTTGTAGCCAAAAAAAAATAAAATAAAATAAAAAGAGAAGAAAAGACAGCCGAACGGAAGCGAAACGAGAAATGGCGGGCTGAATGGCGGGGTAAAACCGGAGCGAAC ************************************************..(((((....)))))(((((......(((..(((((((((((((((....(((............)))...)).)).)))).))))))).(((((....))))).....................................))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........................................................................................................................................................................TAAAAAGAGAAGAAA.................................................................	15	0	4	0.50	2	0	0	2
................................................................................................................................................TGTAGCGAAAAAAAAATAAAAAA...................................................................................	23	2	3	0.33	1	0	1	0
..................................................................................................................................................TAGACAAAAAAAATTAAACTAAAA................................................................................	24	3	8	0.25	2	2	0	0
............................................................................................................................................................................................................................GCTGATTGGCGGGGT...............	15	1	9	0.22	2	2	0	0
.....................................................................................................................................................................................................................................CGGTGTTAAACCGGA......	15	2	20	0.10	2	0	2	0
..................................................................................................................................................................................................................................TGCCGGTGTTAAACCGGA......	18	3	20	0.10	2	0	2	0
...............................................................................................................................................TTGTAGTCTAAAAAAAATA........................................................................................	19	2	15	0.07	1	1	0	0
................................................................................................................................................TGTCGCCAATAAAAAATAAAAA....................................................................................	22	3	20	0.05	1	1	0	0

Anti-sense strand reads

CGCCCCACCTCCTCCCATAGAGGAGGCGAACGGTGAAGTTCCACGTTTTACATGCTGCACGCAGCAAGGCATGTAGTAGCGTACGAAACACGAGAGTCGTGACTTTAGAAAATGTTAGTTGTACTTCGTCGTCGTTTCGTTAAAACATCGGTTTTTTTTTATTTTATTTTATTTTTCTCTTCTTTTCTGTCGGCTTGCCTTCGCTTTGCTCTTTACCGCCCGACTTACCGCCCCATTTTGGCCTCGCTTG ************************************************..(((((....)))))(((((......(((..(((((((((((((((....(((............)))...)).)).)))).))))))).(((((....))))).....................................))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body
..............................................TTTACATGCTGCACGCAGCAAGGCAT..................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
........................................................................................................TGAGAAAATGGTAGTTGT................................................................................................................................	18	2	5	0.20	1	1	0	0	0	0	0
............................................................................TAGCGTAGGAAACTCAAGAGT.........................................................................................................................................................	21	3	5	0.20	1	0	1	0	0	0	0
..........................................................................AGTAACGTACGAAACA................................................................................................................................................................	16	1	7	0.14	1	0	0	0	1	0	0
.............................ACGGTGAAGTGCCATGTTC..........................................................................................................................................................................................................	19	3	8	0.13	1	0	0	1	0	0	0
.............................................................................................GAGTGGTCAATTTAGAAAAT.........................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	1
.................................................................AAGGCATGTAGTAGCGCGA......................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	1	0
.......................................................................................................................................................TTCTTTTTTATGTTATTTTATTTT...........................................................................	24	2	17	0.06	1	0	0	0	0	1	0
...............................................................................................................ATGTTAGGTGTAATTCGTA........................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 10:41 AM