ID:

dsi_24250

 Coordinate:

2r:4835992-4836186 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.7 -18.3 -18.2 -17.8

Flybase annnotation

five_prime_UTR [2r_4835710_4835991_+]; exon [2r_4835710_4835991_+]; exon [2r_4836187_4836405_+]; five_prime_UTR [2r_4836187_4836294_+]; intron [2r_4835992_4836186_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGAACTCAACGTCAGCAGAACGAGCTCCTAAATTGTACATATATTAAACGTAAGAACAGTGTGTTTAATTAAATAACAGGCGTAGGGCGAACGCAGTGACACCTAGACATTTAGGTGTCCGGAGCCTGAATTTATTTACTTGTGGCCTGGATTTTCACTGCATTTGCATGATGCACTCTTCATTCGCGCTCTTAAAGTTTTACGCTCTTTATGCTCACTTTCGCCGCCCCTTTCTCATTGACAGCTACATACATAGTTACGACAACTGCCGTTTTGTGTACCACGCCGGAAGCT
********************************************************************************************.........................((((((.(((.................)))))))))..******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 M023
head
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae
............................................................................................CGCAGTGACACCTAGACATTT...................................................................................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.......CAACGTCAGCAGAACGAGC............................................................................................................................................................................................................................................................................. 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.....................................ACATATATTAAACGTAAGAAC............................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................ATATATTAAACGTAAGAACAG........................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................GCCGTTTTGTGTACCACGCCGGAAG.. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....CTCAACGTCAGCAGAACGAGCTCC.......................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............AGCAGAACGAGCTCCTAAATTG................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GTGTCCGGAGCCTGAATT.................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................ATTTACTTGTGGCCTGGATTT............................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................CTGAATTTATTTACTTGTGGC.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................ATTAAATATCAGGCGTAGGG............................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....CTCAACGTCAGCAGAACGAGCT............................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................GCGTAGGGCGAACGCAGTGACA................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
......TCAGCGTCAGCAGAGCGAGCT............................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................GTAGGGCGAACGCAGTGACA................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TTTGTGTACCACGCCGGAAGC. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................TTAAATATCAGGCGTAGGGC.............................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................ACGCAGTGACACCTAGACATTT...................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................AATATCAGGCGTAGGGCGAGT.......................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.......................................ATATATTAAACGACTGAACAG........................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................ATTTAGGTCTCCGGA........................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0
..........................................................AGTTTGTTGAATTAAATGACA........................................................................................................................................................................................................................ 21 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGCTTGAGTTGCAGTCGTCTTGCTCGAGGATTTAACATGTATATAATTTGCATTCTTGTCACACAAATTAATTTATTGTCCGCATCCCGCTTGCGTCACTGTGGATCTGTAAATCCACAGGCCTCGGACTTAAATAAATGAACACCGGACCTAAAAGTGACGTAAACGTACTACGTGAGAAGTAAGCGCGAGAATTTCAAAATGCGAGAAATACGAGTGAAAGCGGCGGGGAAAGAGTAACTGTCGATGTATGTATCAATGCTGTTGACGGCAAAACACATGGTGCGGCCTTCGA
********************************************************************************************************************************************.........................((((((.(((.................)))))))))..******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
.......TTTGCAGTCGTCTTGCTCGAGGA......................................................................................................................................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATGCGAGAAATACGAGTGAAA......................................................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0
.............................................................................................................................................................................................................................................TAACTGTCGGTGTATGTATCA..................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.........TGCAGTCGTCTTGCTCGAGGGT........................................................................................................................................................................................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................CTACGTGAGAAGTAAGCGCGA........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GTCACTGTGGATCTGTAA....................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................TATGGCCTCGGACTTAAATAAA............................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0
..............TCGTCTTGCTCGAGGATTTAAC................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.........TGCAGTCGTCTTGTTCGAGGA......................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..............CCGTCTTGCTCGAGGATTTAAC................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................TCCACAGGCCTCGGACTTAAA................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................CTGTCGATGTATGTATCAATG.................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................AGGCCTCGGACTTAAATAAAT............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.GCTTGAGTTGCAGTCGTCTTG................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...TTGAGTTGCAGTCGTCTTGCT............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................TGAGAAGTAAGCGCGAGAATT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................CGCTTGCGTCACTGTGGATCT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..CTTGAGTTGCAGTCGTCTTGC................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................CAGGCCTCGGGCTTAAATAAAT............................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................CACAGGCCTCGGACTTAAAT................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................CTCGAGGATTTAACATGTATA............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................GACGTAAGCGCGCGAATCTCAA............................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................ATACGAGTGGGGGCGGCGGGG................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0
............TGTCGTCTTGCTCGAGGGTTT...................................................................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................ATCGCGCTTGCGTCA..................................................................................................................................................................................................... 15 1 3 0.33 1 0 0 0 1 0 0 0 0
..........................................................................................................................GTCGGACTTAAAGAAATG........................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................AGAGCAACTGTCGAT............................................... 15 1 5 0.20 1 0 0 0 0 1 0 0 0
............AGCCGTCTTGGTCGATGAT........................................................................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................TGTATCAATGGTGTCGA........................... 17 2 17 0.06 1 0 0 0 1 0 0 0 0
...............TGTCTTGCTAGAGGAT........................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 06:44 AM