ID:

dsi_24242

 Coordinate:

3r:17666062-17666211 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.9 -19.9 -19.9 -19.8

Flybase annnotation

exon [3r_17665884_17666061_-]; CDS [3r_17665884_17666061_-]; intron [3r_17666062_17666432_-]

No Repeatable elements found

mature
  1. 2r:8301008-8301022 +
  2. 2r:13539857-13539871 +
  3. dsi_24242  3r:17666141-17666155 -
  4. siII:6174-6188 +
  5. siII:6248-6262 +
  6. node_2611:37-51 +
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGGAAGTGATATATGTATAATTTACTTTGTGATTAAATGGGAGAGGACAGTGGTTTTTTATCAATTTTAATCCTTCTTCATATGAAATACCAATGAAATCGCTTTCAAAGTATTGAATATTTATGACTAAGGTCTTTAAGAAACGATAAACTTAGTTTTTATTGATCTATATAAATTATATACTTTCCGTGCATGTGCAGCCCTCCAGTTGCCTATCAAATCGTGAGGAGAACGAGATCTACAGCTATAC
**************************************************......................((....((((((...............(((....(((((((.....(((((((....(((((....((((((..........))))))...))))).)))))))...)))))))..))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
........................................AAGAGGACAGTGGCTTTTT............................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0
..........................................................................................................AAAGTATTGAATATT................................................................................................................................. 15 0 6 0.33 2 0 2 0 0 0
.....................................................................ATCCTTCTTCAGATGA..................................................................................................................................................................... 16 1 5 0.20 1 0 0 1 0 0
.....ATGCTATATTTATAATTTACTTT.............................................................................................................................................................................................................................. 23 3 10 0.10 1 0 0 0 0 1
.....................TTACTTCTTGATTAAATGGAA................................................................................................................................................................................................................ 21 3 13 0.08 1 0 1 0 0 0
......................................GGGAGAGGTCAGTGG..................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 1 0
..................................................................................................................GAATATTTATGACTAGA....................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0
.....................................TCGGACAGCACAGTGGTTT.................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ACCTTCACTATATACATATTAAATGAAACACTAATTTACCCTCTCCTGTCACCAAAAAATAGTTAAAATTAGGAAGAAGTATACTTTATGGTTACTTTAGCGAAAGTTTCATAACTTATAAATACTGATTCCAGAAATTCTTTGCTATTTGAATCAAAAATAACTAGATATATTTAATATATGAAAGGCACGTACACGTCGGGAGGTCAACGGATAGTTTAGCACTCCTCTTGCTCTAGATGTCGATATG
**************************************************......................((....((((((...............(((....(((((((.....(((((((....(((((....((((((..........))))))...))))).)))))))...)))))))..))))))))).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................TCTAGCGAAAGTTTCAGACCTT..................................................................................................................................... 22 3 1 1.00 1 1 0 0 0
.......................................................................................................................................CATTCTTTGCTATTTCCATCA.............................................................................................. 21 3 2 0.50 1 0 1 0 0
......................................................................................................................................................................................................................................TTGCTCTTGGTGTCGATA.. 18 2 9 0.22 2 0 0 0 2
.......................................................................................................................................ATTTCTTTGCTATTTTCATC............................................................................................... 20 3 20 0.10 2 0 0 2 0
.......................................................................................................................................................................ATATATTTAGTAGATGAAA................................................................ 19 2 10 0.10 1 1 0 0 0
.......................................................................................................................................ATTTCTTTGCTATTTTCATCA.............................................................................................. 21 3 12 0.08 1 0 0 1 0
..........................................................................................................................................TCTTTGCTATTTTCATCA.............................................................................................. 18 2 16 0.06 1 0 0 1 0
....................................................................TTAGGTTGAAGTAAACTTTATGGT.............................................................................................................................................................. 24 3 20 0.05 1 0 1 0 0

Generated: 04/24/2015 at 02:01 AM