ID:

dsi_24198

 Coordinate:

2r:5627243-5627296 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.2 -9.2 -9.2 -8.6

Flybase annnotation

exon [2r_5627183_5627242_+]; CDS [2r_5627183_5627242_+]; CDS [2r_5627297_5627592_+]; exon [2r_5627297_5627592_+]; intron [2r_5627243_5627296_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------##################################################
GGCCACGTCGGAAACAAGTGGCTCCTCGGACCTTTACGATTCCATAAGTGGTGGGTAGTTAAATTAATGTTTAAACTAACACTCATATGTACGTATATGAACAGATGAGAACACCAAGGAGGACGATCGGGAACGCAGTAAGATCAACGCAGAA
**************************************************.................(((............((((((......))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.....................CTCCTCGGACCTTGAAAATT................................................................................................................. 20 3 9 25.78 232 168 5 20 3 2 13 7 0 13 1 0 0
.....................CTCCTCGGACCTTGA...................................................................................................................... 15 1 5 2.20 11 0 5 0 1 1 0 0 2 0 0 0 2
....................................................................................................AGTGATGAGAACACCAAGGAGGACGA............................ 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................TGGAACGCAGAAAGATCAACGAAGAA 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................CTCCTCGGACCTTTAAAATTC................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......TCGGAAACAAGTGGCTCC................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................ATCGGGAACGCAGTAAGATCAACGCAGA. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AACGCAGTAAGATCAACGC.... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATGAGAACACCAAGGAGGA............................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................CTCATATGTACGTATATGA...................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......GTCGGAAACAAGTGGCTCCTCGGACCT......................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................GATCGGGAACGCAGTAAGATCAACGC.... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................TCGGGAACGCAGTAAGATCAACGCAGA. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GAGGACGATCGGGAACGCAGTAAGAT.......... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......GACGGAAACAAGTGGCGGCTC............................................................................................................................... 21 3 5 0.60 3 0 0 0 3 0 0 0 0 0 0 0 0
.....................CTCCTCGGACCTTTGCG.................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................TTTCGATTCCCTAAGTGG....................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
......GACGGAAACAAGTGGCGGCT................................................................................................................................ 20 3 14 0.21 3 0 0 0 3 0 0 0 0 0 0 0 0
....................................CGATTCCGTAAGTAGTGG.................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................ACACCAAGGAGGAAGA............................ 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
................ATTTGCTCCTCGGACCTT........................................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
............AACAAATTTCTCCTCGGACC.......................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..................TGTCTCCTCGGACCT......................................................................................................................... 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
................................ATTTCGATTCCCTAAGTGG....................................................................................................... 19 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
......................TCCTCGGACCATTATGA................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
................ATTTTCTCCTCGGACCTTTA...................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
................................................TGGTGGGTAGTTTAACT......................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................AAAGTGGTGGGTAGT............................................................................................... 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................GGTGGGTAGTTTAACT......................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................AGGGGATCTTCGGACCTT........................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................AACTCAATGTTTAAACT............................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............ACAATTTTCTCCTCGGACC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCGGTGCAGCCTTTGTTCACCGAGGAGCCTGGAAATGCTAAGGTATTCACCACCCATCAATTTAATTACAAATTTGATTGTGAGTATACATGCATATACTTGTCTACTCTTGTGGTTCCTCCTGCTAGCCCTTGCGTCATTCTAGTTGCGTCTT
**************************************************.................(((............((((((......))))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
................................AAATCCTAAGGTATTCCCTAC..................................................................................................... 21 3 3 0.33 1 1 0 0
...................CCGAGGATGCTGGAAAT...................................................................................................................... 17 2 5 0.20 1 0 1 0
..................ACCGAGGAGACTGGAAT....................................................................................................................... 17 2 13 0.08 1 0 0 1

Generated: 04/23/2015 at 08:00 PM