ID:

dsi_24196

 Coordinate:

4:621548-621697 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.4 -13.4 -13.1

Flybase annnotation

CDS [4_621698_622532_-]; exon [4_621698_622532_-]; intron [4_620810_621697_-]

Repeatable elements

NameClassFamilyStrand
FB4_DMDNATcMar-Tc1-
mature
star
  1. 2l:2280-2300 +
  2. 2l:8280187-8280207 -
  3. dsi_31307  2l:20583201-20583221 -
  4. 2l:21823404-21823424 -
  5. dsi_31666  3l:5151326-5151346 +
  6. 3r:6331507-6331527 +
  7. 4:197314-197334 -
  8. dsi_24196  4:621550-621570 -
  9. x:820848-820868 +
  10. x:820921-820941 +
  11. x:7665420-7665440 -
  12. node_36527:671-691 -
  13. node_50126:23-43 +
  14. node_39799:175-195 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCAAAAGTCAGCGACACGTTTCAACAGGCCGCTCTGACAACAGATTCGGGTATGATTCATTTGTATTTTTGTTTGATTGTCTATCATTACCCTTACAGAAGCTCAAAGAAGCTAAAATCAGAAAAATTAAATTTTTTAAATTTAAAAGCTGGAATCGTTTGCCAATTCTTTTTTTTTGCCCACGTCCAGTTTTTGAGATCAGAATTTTCGAAAAAGTACGACGTTTTTCGAAAATCAAAAAAAAAGTTT
***********************************************************************************************************************************************(((((((((((..(((..((.((.........)).))..))))))))))))))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 M025
embryo
 M053
female body
 O002
Head
 SRR902009
testis
..................................................................................................................................................................................................TGAGATCAGAATTTTCGAAAAAGTA............................... 25 0 1 12.00 12 0 1 2 0 5 4 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAATT.................................................................................. 25 0 1 6.00 6 5 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAAT................................................................................... 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAGAATTTTCGAAAAAGTACGACGT......................... 26 0 1 5.00 5 4 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TGCCCACGTCCAGTTTTTGAG.................................................... 21 0 14 4.00 56 0 0 0 56 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAA.................................................................................... 23 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGT........................................................... 20 0 17 3.88 66 0 1 2 62 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CCCACGTCCAGTTTTTGAGATCAGAATT........................................... 28 0 1 3.00 3 0 1 0 0 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTTCGATAAAGGACGACTTTT....................... 22 3 1 3.00 3 0 0 0 0 0 0 0 2 1 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCAGTTT......................................................... 21 0 16 2.19 35 2 3 0 30 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCCCACGTCCAGTTTTTGAG.................................................... 20 0 14 2.00 28 0 0 0 28 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATTTAAAAGCTGGAATCGTTTGCCAA.................................................................................... 26 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCC...................................................................................... 21 0 18 1.56 28 1 6 7 0 0 4 1 2 7 0 0 0 0
.................CGTTTCAACAGGCCGCTCTGACAACAG.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATTTTCGAAAAAGTA............................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGCCCACGTCCAGTTTTTGAGATCAGAATT........................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TCAGAATTTTCGAAAAAGTACGACGTT........................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GAATTTTCGAAAAAGTACGACGTT........................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................AGTTTTTGAGATCAGAATT........................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................TCAACAGGCCGCTCTGACAACAGA............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................TCAACAGGCCGCTCTG..................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........AGCGACACGTTTCAACAGGCC........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................CGTTTCAACAGGCCGCTCTGA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTGCCAA.................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................TTTCAACAGGCCGCTCTGACAACAGA............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TTTTCGATAAAGGACGACTTTTT...................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................TTTTCGAAAAAGTACGACGTTTTT..................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TGAGATCAGAATTTTCGAAAAAGT................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTGAGATCAGAATTTTCGAAAAAGTA............................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................TTTGTATTTTTGTTTGATTGTCA....................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TAAATTTTTTAAATCTAAAAGCTGGA................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................ACGTTTCAACAGGCCGCTCTGAC................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TGAGATCAGAAATTTCGAAAAAGTA............................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TGCAAAAGCCAGGTACACGTTT.................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTAAAAGCTGGAATCGTTTGCCAA.................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................ACAGGCCGCTCTGACA.................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CGTTTGCCAATTCTTTTTTTTGCC...................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................CGTTTGCCAATTCTTTTTTTT......................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAAA................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TCATTACCCTTACAGAAGCTCAAAGA............................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................CAACAGATTCGGGTATGATTC............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................GTTTTTGAGATCAGAATTTTCGA...................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TGCCCTTACAGAAGCTCAAAG............................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAATTC................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTAAAAGCTGGAATCGTTTGCCAATTC................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTAAAAGCTGGAATCGTTTGCCAA.................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTCCAGTTTTTGAGATCAGAATTT.......................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAAGCTGGAATCGTTTGCCAA.................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................TTTGTTTGATTGTCTATCATTACCCT............................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................AAATTTTTTAAATTTAAAAGCTGGAATCA............................................................................................ 29 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................TTTTTAAATTTAAAAGCTGGAATCGTT.......................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAATTT................................................................................. 26 1 15 0.80 12 11 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................TTAAAAGCTGGAATCGTTTGC....................................................................................... 21 0 20 0.60 12 0 6 6 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGCCCACGTCCAGTTTTTG...................................................... 21 0 14 0.57 8 0 6 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................TTAAATTTAAAAGCTGGAATCGTT.......................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAAGCTGGAATCGTTTGCC...................................................................................... 19 0 20 0.50 10 0 0 0 0 0 0 0 0 10 0 0 0 0
.........................................................................................................................................TAAATTTAAAAGCTGGAATCGTTA......................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTG........................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
TGCAAAAGCCAGGTACACGTT..................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTAAATTTAAAAGCTGGAATCGTTTGC....................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTTTAAATTTAAAAGCTGGAATCGTT.......................................................................................... 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAAC................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAAATTTAAAAGCTGGAATCGT........................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTGC....................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTT.......................................................... 21 0 16 0.44 7 0 2 4 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGCCCACGTCCAGTTTTTGA..................................................... 21 0 14 0.36 5 0 0 5 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGTCCAGT........................................................... 21 0 17 0.35 6 0 2 3 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TTTTAAATTTAAAGGCTGGAATCGTT.......................................................................................... 26 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................TTTAAAAGCTGGAATCGTTTG........................................................................................ 21 0 20 0.30 6 0 4 0 0 1 0 0 0 0 0 1 0 0
.............................................................................................................................................TTTAAAAGCTGGAATCGTTTGC....................................................................................... 22 0 20 0.30 6 0 3 1 0 0 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................TTCCGAAGATCAAAAAAAAA.... 20 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TTCGATAAAGGACGACTTTTT...................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGCCAATTTT................................................................................ 27 1 15 0.20 3 3 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAATTTAAAAGCTGGAATCGT........................................................................................... 21 0 20 0.20 4 0 3 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTTTT........................................................ 23 0 15 0.20 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGTCCAG............................................................ 20 0 17 0.18 3 0 0 1 0 0 0 0 0 0 0 2 0 0
..............................................................................................................................................TTAAAAGCTGGAATCGTTTGCC...................................................................................... 22 0 17 0.18 3 0 0 0 0 0 0 0 2 0 0 1 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCC.............................................................. 17 0 18 0.17 3 0 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAAAGCTGGAATCGTTTGCC...................................................................................... 20 0 19 0.16 3 1 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTTTG...................................................... 23 0 13 0.15 2 0 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................AAATTTAAAAGCTGGAATCGTTTGCC...................................................................................... 26 0 13 0.15 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTTTGAG.................................................... 25 0 13 0.15 2 0 0 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTTTGC....................................................................................... 20 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGCTGGAATCGTTTGCC...................................................................................... 18 0 20 0.15 3 0 1 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................................................................................................................TTTCGATAAAGGACGACTTTT....................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................CCCACGTCCAGTTTTTG...................................................... 17 0 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTTTTT....................................................... 24 0 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CCACGTCCAGTTTTTG...................................................... 16 0 15 0.13 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................TCCATTTGTATTTTTGT................................................................................................................................................................................. 17 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............ACTCGTCTCAACAGGCC........................................................................................................................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAGTCGTTTGCC...................................................................................... 21 1 18 0.11 2 0 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................................................................TTTGCCCACGTCCAGTT.......................................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AAATTTAAAAGCTGGAATCGTTTGC....................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTAAAAGCTGGAATCGT........................................................................................... 18 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAAAAGCTGGAATCGTT.......................................................................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................CTCAACAGGCCGCACGGAC................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTTTGAGA................................................... 26 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTTTGAGAA.................................................. 27 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTTTGA..................................................... 24 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTTTTTG...................................................... 25 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGTCCAGTTTTTGAGA................................................... 29 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCAGTTTTTG...................................................... 24 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTTAAAAGCTGGAATCGTTTGCC...................................................................................... 25 0 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGCCCACGTCCAGTTTTTGAG.................................................... 22 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTGCCCACGTCCGGTTTTTG...................................................... 20 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTTCCCACGTCCAGTTTTTGA..................................................... 24 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TTGCCCACGTCCAGTTTTTG...................................................... 20 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCCCCACGTCCAGTTTTTGA..................................................... 21 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CCCACGTCCAGTTTTTGAGAT.................................................. 21 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GCCCACGTCCAGTTTTTGAGA................................................... 21 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGCCCACGTCCAGTTTTTGAGA................................................... 24 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................TTAAAAGCTGGAATCGTTTGCCAATTT................................................................................. 27 1 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................GCCCACGTCCAGTTTTTGA..................................................... 19 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTTTA........................................................ 23 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGTCCAGTTTT........................................................ 24 0 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTTTTTTTGCCCACGTCCAGTTT......................................................... 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CTAAAAGCTGGAATCGTTTGCCAATTT................................................................................. 27 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGTTT......................................................... 22 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAGACT......................................................... 22 2 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGTCCAGTTT......................................................... 23 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCAGTAT......................................................... 21 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CTTTTTTTGCCCACGTCCAGTTT......................................................... 23 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCAGTTTT........................................................ 22 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCAGTTTA........................................................ 22 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTTGCCCACGTCCAGTTTTTT...................................................... 22 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTT......................................................... 20 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTTTTTTGCCCACGCCCAGTTTTCGAGA................................................... 29 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTTTT........................................................ 21 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTTTTGCCCACGTCCAG............................................................ 19 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCAGTT.......................................................... 19 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACGTCCAGTTTTTGA..................................................... 15 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................ACTTCTCAACAGGCCGC......................................................................................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TAAAAAGCTGGAGTCGTTTGCC...................................................................................... 22 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTTGCCCACGTCCAGTTTT........................................................ 20 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TAGAAGCTGGAATCGTTTGCC...................................................................................... 21 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGCCCACGTCCAGTTTT........................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTTAAAAGCTGGAATCGTTTGC....................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTTTTGCCCACGTCCA............................................................. 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............CACTTCTCAACAGGCCG.......................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............GGCTCGTCTCAACAGGCC........................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................TTTGCCCACGTCCAG............................................................ 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTTTTGCCCACGTCCA............................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTTAAAAGCTGGAAAGGTT.......................................................................................... 21 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CAAAGCTGGAACCGTTCGCC...................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............GGTACGTCTCAACAGGCC........................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATTTAAAAGCTGGAATCGTTTGC....................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATTTAAAAGCTGGAATCGTT.......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AGCTGGAATCGTTAG........................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGTCGTAAATCAAAAAAA...... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACGTTTTCAGTCGCTGTGCAAAGTTGTCCGGCGAGACTGTTGTCTAAGCCCATACTAAGTAAACATAAAAACAAACTAACAGATAGTAATGGGAATGTCTTCGAGTTTCTTCGATTTTAGTCTTTTTAATTTAAAAAATTTAAATTTTCGACCTTAGCAAACGGTTAAGAAAAAAAAACGGGTGCAGGTCAAAAACTCTAGTCTTAAAAGCTTTTTCATGCTGCAAAAAGCTTTTAGTTTTTTTTTCAAA
****************************************************(((((((((((..(((..((.((.........)).))..))))))))))))))..*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M024
male body		 GSM343915
embryo
 M023
head
 M025
embryo
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCT................................................... 21 0 14 13.71 192 26 98 28 0 17 15 0 5 1 2 0 0 0 0
...............................................................................................................................................ATTTTCGACCTTAGCAAAC........................................................................................ 19 0 20 6.80 136 0 0 136 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAAAAAAACGGGTGCAGGTCATAAAT...................................................... 26 3 18 5.00 90 88 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCTAGTCTT............................................. 27 0 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAAAAAAACGGGTGCAGGTCATAAATT..................................................... 27 3 17 3.59 61 59 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCAAAAACT..................................................... 21 0 14 3.36 47 6 4 0 28 1 8 0 0 0 0 0 0 0 0
.............................................................................................................................................AAATTTTCGACCTTAGCAA.......................................................................................... 19 0 20 3.10 62 0 0 62 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACTCTA.................................................. 21 0 14 3.07 43 3 5 0 28 3 1 0 1 0 2 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCATAAAT...................................................... 25 2 17 2.06 35 34 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TAAATTTTCGACCTTAGCAAACGGTT.................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCTAGTCT.............................................. 26 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................ATTTTCGACCTTAGCAAACGG...................................................................................... 21 0 18 1.94 35 0 0 33 0 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAACTC.................................................... 21 0 14 1.86 26 9 5 0 0 1 8 0 2 0 0 0 1 0 0
..............................................................................................................................................................................AAAACGGGTGCAGGTCAAAAA....................................................... 21 0 16 1.81 29 0 0 0 29 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATTTTCGACCTTAGCAAACG....................................................................................... 20 0 20 1.70 34 0 0 0 34 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AAACGGGTGCAGGTCAAAA........................................................ 19 0 20 1.60 32 0 0 0 32 0 0 0 0 0 0 0 0 0 0
ACGTTTTCGGTCCATGTGCAA..................................................................................................................................................................................................................................... 21 3 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AGCCCATGCTAAGGACACAT........................................................................................................................................................................................ 20 3 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCATAAATT..................................................... 26 2 16 1.31 21 21 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTC.................................................... 20 0 14 1.14 16 2 4 0 0 1 9 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGGTCAAAA........................................................ 21 0 16 1.13 18 4 8 0 0 3 2 0 1 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAACTCTAGTCTT............................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAACGGTTAAGAAAAAAAAACGGGTGC................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAACTCTAGTCTT............................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AGCTTTTTCATGCTGCAAAAA..................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTTTCATGCTGCAAAAAGCTTTT............... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACTCTAGTCT.............................................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......CAGTCGCTGTGCAAAGTTGTC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................TAAAAAATTTAAATTTTCGACC................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCTAGT................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........CGCTGTGCAAAGTTGTCCGGCGAGAC..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................CGAGTTTCTTCGATTTTAGTCTTTTT........................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................CGAGACTGTTGTCTAAGCCCATACTAAGT.............................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CGGTTAAGAAAAAAAAACGGGTGCAGGT............................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCTACT................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GCAAAGTTGTCCGGCGAGACTGTTGT............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTTTTCATGCTGCAAAAAGCTTTTAGT............ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................AGTAATGGGAATGTCTTCGAGTTTCTT........................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................CAGGTCAAAAACTCTAGTCTTAAAAGCTT..................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.CGTTTTCAGTCGCTGTGCAAAGTTGT............................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCAAAAAC...................................................... 20 0 14 0.86 12 5 1 0 0 1 5 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAACTCT................................................... 22 0 14 0.71 10 3 4 0 0 1 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAAAAACGGGTGCAGGTCATAAATT..................................................... 28 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAGCTCTAGTCT.............................................. 23 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGCAGGTCAAAAGCTCTAGTCT.............................................. 22 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAAAAACGGGTGCAGGTCATAAAT...................................................... 27 2 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAACT..................................................... 20 0 14 0.64 9 2 2 0 0 1 3 0 1 0 0 0 0 0 0
.............................................AAGCCCATGCTAAGGACACA......................................................................................................................................................................................... 20 3 5 0.60 3 0 1 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACTCT................................................... 20 0 14 0.50 7 0 4 0 0 1 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAAAAAAAAACGGGTGCAGGTCAT.......................................................... 26 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................AGCCCATGCTAAGGACACA......................................................................................................................................................................................... 19 3 8 0.50 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0
........................................................................................................................................................................................AAGGTCCAAGACTCTAGTCTT............................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCAAAAACTCT................................................... 27 0 13 0.46 6 5 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCATAAAT...................................................... 26 2 16 0.44 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCAGGTCAAAAGCTCTAGTCT.............................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................ATGGAGTTTCTTCGATTTCAGT................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................AAGCCCATGCTAAGT.............................................................................................................................................................................................. 15 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................AGCCCATGCTAAGGATACAT........................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................ACAAAAAAACGGGTGCAGGTCATAAAT...................................................... 27 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCAA.......................................................... 21 0 16 0.31 5 0 3 0 0 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCA........................................................... 21 0 17 0.29 5 1 4 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCGAAAACTCT................................................... 21 1 14 0.29 4 0 2 0 0 0 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AAACGGGTGCAGGTCAAAAAC...................................................... 21 0 14 0.29 4 0 1 0 0 0 3 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCATAAATT..................................................... 27 2 15 0.27 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCGCAAAAAGGATTTAGTTTTT........ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCAAAAACT..................................................... 26 0 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCAAAAACT..................................................... 25 0 13 0.23 3 2 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCAAAAACT..................................................... 27 0 13 0.23 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAGACTCT................................................... 21 1 14 0.21 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CAAAAAAACGGGTGCAGGTCATAAA....................................................... 25 2 14 0.21 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGAACGGGTGCAGGTCAAAAAC...................................................... 22 2 14 0.21 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAGAAACTCT................................................... 21 1 14 0.21 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TACGGGTGCAGGTCAAAAAC...................................................... 20 1 14 0.21 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAAC...................................................... 19 0 14 0.21 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAAAAACGGGTGCAGGTCA........................................................... 22 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GGTTATTCGATTTTAGTCTTGT............................................................................................................................ 22 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................AAAAAAAAACGGGTGCAGGT............................................................. 20 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCGATTTTAGTTTTTTTA.......................................................................................................................... 18 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCGAAAACTCTA.................................................. 21 1 14 0.14 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCGGAAACTCTA.................................................. 21 2 14 0.14 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGGTGCAGGTCAAAAACTCTA.................................................. 22 1 14 0.14 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0
..............................................................TCATAAAAATGAACTAACAGATA..................................................................................................................................................................... 23 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAAC...................................................... 18 0 14 0.14 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....TCCCGTCCCTGTGCAAAGTT................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CGGTTGCAGGTCAAAAACTCT................................................... 21 1 14 0.14 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAACT..................................................... 16 0 15 0.13 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAAAAAGGATTTAGTTTTT........ 19 2 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
..............................................................................................................................................................................TTTACGGGTGCAGGTCAAAAAC...................................................... 22 3 15 0.13 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAACGGGTGCAGGTCAAAAAC...................................................... 21 1 15 0.13 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................TTTAAACGGGTGCAGGTCAAAAAC...................................................... 24 3 15 0.13 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAACTCTA.................................................. 19 0 15 0.13 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCGGAAAC...................................................... 20 2 15 0.13 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCAAAA........................................................ 24 0 15 0.13 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGGTCGAAA........................................................ 21 1 16 0.13 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCGCAAAAAGGATTTAGTTTT......... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAAAAA....................................................... 18 0 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGAAGGTCAAAAACT..................................................... 21 1 17 0.12 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGAAGGTCAAAAACT..................................................... 20 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTCGACCTTAGCAAACGG...................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................AAAGCTTTGGCATGCTG........................... 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCAAAAACTCT................................................... 29 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCAAAAACTC.................................................... 27 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCAAAAACTC.................................................... 26 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCATAAAC...................................................... 24 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGGTCAAAAACT..................................................... 24 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAAAAACGGGTGCAGGTCAAAAACTC.................................................... 28 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAACGGGTGCAGGTCAAAAACTC.................................................... 24 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTTACGGGTGCAGGTCAAAAACTC.................................................... 24 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCGAAAACTC.................................................... 21 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTGGGTGCAGGTCAAAAACTCT................................................... 22 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CACGGGTGCAGGTCAAAAACTC.................................................... 22 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CCGCAAAAAGGATTTAGTTT.......... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCAAAGACT..................................................... 21 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACTC.................................................... 19 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCAGAAACT..................................................... 20 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCAAAAACTCTA.................................................. 24 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCGGGTGCAGGTCAAAAACTCTA.................................................. 23 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................AACGGGTGCAGGTCAAAAACTCT................................................... 23 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCGAAAAC...................................................... 20 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGTGCAGGTCAAAAACT..................................................... 17 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GGTGCAGGTCAAAAACTC.................................................... 18 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................AAACGGGTGCAGGTCAAAAACT..................................................... 22 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TACGGGTGCAGGTCAAAAACTC.................................................... 22 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGGCAAAAACTCT................................................... 21 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTACGGGTGCAGGTCAAAAACT..................................................... 22 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCGGGTGCAGGTCAAAAACT..................................................... 20 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACTCGA.................................................. 21 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GGGGTGCAGGTCAAAAACTCT................................................... 21 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGGGTGCAGGTCAAAAACT..................................................... 20 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAAACGGGTGCAGGTCAAAAAC...................................................... 22 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TAAAAAAAACGGGTGCAGGTCATAAA....................................................... 26 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTGGTGCAGGTCAAAAACTCTA.................................................. 22 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGCCAAAAACTC.................................................... 21 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAAACT..................................................... 18 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCGGGTGCAGGTCAAAAACTCT................................................... 22 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAACTCTA.................................................. 22 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GGTGCAGGTCAAAAACTCTA.................................................. 20 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TACGGGTGCAGGTCAGAAACT..................................................... 21 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCATAAA....................................................... 24 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCGGAGACTCTA.................................................. 21 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAACTC.................................................... 17 0 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAAAAACTCT................................................... 18 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATGGTGCAGGTCAAAAACTC.................................................... 20 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTGCAGGTCAGAAACTCT................................................... 18 1 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AACGTGTGCAGGTCAAAAACT..................................................... 21 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTAAAAAACT..................................................... 21 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................AAGCCCATTCTAAGGACAC.......................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGTCATAA........................................................ 23 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTAACGGGTGCAGGTCAAAAAC...................................................... 22 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GGCGGGTGCAGGTCAAAGACT..................................................... 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGGGTGCAGGTCAAAAAC...................................................... 19 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTAAAAAACTC.................................................... 20 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGGTCATAAA....................................................... 22 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGCAGGTCAAAAACTCTA.................................................. 18 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................AAACGGGTGCAGGTCAAAAA....................................................... 20 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCAAAA........................................................ 22 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATTGTGCAGGTCAAAAACTCT................................................... 21 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.CGTTTTCGGTCCATGTGCA...................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AACGGGTGAAGGTCAAAAAC...................................................... 20 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACGGGTGAAGGTCAAAAACTCT................................................... 22 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................AAAAAACGGGTGCAGGTCAA.......................................................... 20 0 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................AGAAAACGGGTGCAGGTCAAA......................................................... 21 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGAGCAGGTCATAAAT...................................................... 25 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAAAACGGGTGCAGGT............................................................. 18 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGAAAAACGGGTGCAGGTCATAAAT...................................................... 25 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAACGGGTGCAGGTCAAAA........................................................ 20 0 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAGAACGGGTGCAGGTCGAAA........................................................ 21 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGGTCGGAG........................................................ 21 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.CGTTTTCAGTCGGTGT......................................................................................................................................................................................................................................... 16 1 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................CGGGTCAGGTCAAAAACTCT................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................AACGGGTGCAGGTCGAAAGCTC.................................................... 22 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................AAGCCCACACTAGGTA............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................CCAAGCCCATGCTAAG............................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GACCTTAGCAAACGGGTAAGA................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................GGGTGCAGGTCAAAA........................................................ 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGTGAAGGTCAAAAACTCT................................................... 20 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGGGTGCAGGTCAAAAGCTCT................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................ACGGGTGCAGGTCGAAA........................................................ 17 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................TAAATTTTCGACCTTAGCAAA......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AAAAACGGGTGCAGG.............................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAAAAAAGGGTGCTGG.............................................................. 19 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCTTAAAAAATTTAAATTTTCGACC................................................................................................. 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:621498-621747 - dsi_24196 TGCAAAAG-TCAGCGACACGTTTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------TTTGTATTTTTG-----------TTTGATTGTCTATCATTACCCTTACAG------------------------AAGCTCAAAGAAGCTAAAATCAGAAAAATTAAA-TTTTTTAAATTTAAAAGCTGGAATCGTTTGC-------------------------CAATTCTTTTT-TTTTGCCCACGTCCAGTTTTTGAGATCAG-AATTTTCGAAAAAGTACGACGTTTTTCGAAAATCAAAAAAA--AAGTTT
droSec2 scaffold_30:521125-521373 - dse_1206 TGCAAAAG-TCAGCGACACGTGTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------TTTGTATTTTTG-----------TTTGATTGTCTATCATTACCCTTACAG------------------------AAGCTCAAAGAAGCTAAAATCAGAAAAATCAAA-TTTTTTAAATTTGAAAGCTGGAATCGTTTGC-------------------------CAATTCGTTTT--TTTGCCCACGTCCAGTTTTTGAGATCAG-AATTTTCGAAAAAGTACGACGTTTTTCGAAAATCAAAAAAA--AAGTTT
dm3 chr4:806631-806867 - TGCAAAAG-CCAGCGACGGGTTTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------ATTGTATTTGTC-----------TTTG--TGTCTATC------CTTGCAG------------------------AAGCTCAAAGAAGCTGGGTTCGGAAAAATGGAA-TTTTCGAAATTTGAAAGCTGGAATCGTGTG---------------------CCCACCAATTAGTTTTTTTTTGTCCACGTCCAGTCTTTGAGATCTG-AATTTTCAAAAAAGTTC----------GATAATCAAAAAGT--GTACTT
droEre2 scaffold_4770:1557375-1557585 - ATACGAAT-TCAG--------------------------------------------------------------------CTCG----------------------------TTTGTATTTTTTGAGGATCTTGGTTAA--TGTCGATTCTTGAATTC-----------TTGACAATG-------TGAGCTCAAAGAAGCTGGGTTCGGTAAAATCTAG-TTTTTGAAATTTAAAAGGTGGAATCGTTTG---------------------CCCACCAATTAGTTTT-TTTTGCCCACGTC--GTTTTAAAGAT--G-AAATTTTAACATTTTTC----------GAAAATCAAAAAAT--TGACTT
droYak3 2L:20633670-20633828 - TGCC----------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGGCTTCATAG-----------------------CAAGCTCAAAGAAGCTGGGTCCGCAAAAATTGAA-TTTTTGAAATTTGAAAGGTGAAATCGTTTG---------------------CCCACCAATTAGTTTT-TTTTGCCCACGTCCAGTTTTCAAGATATG-AAATTTCGAAAAATTTC----------GAACTTCAAAAA----------
droEug1 scf7180000408984:397419-397420 + TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302377:172570-172824 - TGCAAAAAGCCGGCTGC-----------------TTTTTCAGCAGCCATCTCGCTCGCTCTCATTAGAAACT---------------------T-------------TTGGCATTTGTATTTGTG--------------AATTATTTA--------------ACAATCTGTTGATAATT-------TCAGCTTAATGAAGCTGAGTTCGCTAAAATGAAA-TTTTTGAAATTTGAAAACGAGAATCGTTTGT-----------CCACGTTTGTCCACCTTTTAGTTTT--TTTGTCCACGTCCAGTTTCAAATATATG-AAATTTCGAAAATGTTT----------GTAAATTAAATAGT--AAAATT
droTak1 scf7180000415069:35341-35575 - AGG---------------------------CTGCTTCGACAAC------------------------GG-CACT-----GGTTCGACTTAACTTTTCTTAACATGTCATGGCAG---------------------------------------------------------------TGGTATCACCGAGCTCAGAGAAGCTGGGTCGGGTAAAATTAAA-ATTTCGAATTTTGAATATGGGAATCGTTTGTCCACCGTTTGTCCACGTTTGACCACCTTTTAGTTTT-TTTTGTCCACGTCCAGTTTCGAAAATATG-GGATTTCAAAAATTTTC----------GAAAATCAAAAAGTTGAAATTT
droEle1 scf7180000486688:15100-15318 + GGGTAGT------------------------------------------------------------------------CATTCGGGCATATTTTTGTTAACTTT--------------------------------------ATTCA--------------GCAA-----------TG--ATCATCCAGCTCAAAGAAGTTGGGTCGACTAAAATCGAA-TTTTCGAAATTTGAAAAGCGGAATCGTTTGCCCATTTTTTGCCCACTTTTGCCCACCAATTAGTTTT-TTTTGCCCACCTCCAGTTTTGAAAATATGGGAAGTTCGAAAATTTTCGAAGATTTTCGAAAACATAAAA----------
droRho1 scf7180000768566:209-376 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAAGAAGCTGGGTCGACAAAAATAAAA-TTTTCGAAAATTGAATAGCTTAATCGTTTGCCCATTTTTTGCCCATGTTTGCCCACTTTTTAATTTT-TTTTGCCCACCTTTAGTTTTGAAAATATGGAATCTTCGAAAATTTTCGAACATTTTCGAAAACATAAAA----------
droFic1 scf7180000454126:1130539-1130689 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAAGAAGTTGGGTCCAAAAAAATTTCG-AATTTCAATTTTGAAAATTGGAATCGTTTGACCCTCGTTTGACCACGTTTGCCCACCTTTTAGTTTTTTTTTGAC---CCCCCGTTTCGAAGATATC-GAATTTCGAAAATTTTC----------GAAAAT--------------TT
droKik1 scf7180000298510:2172-2350 - ATTT----------------------------------------------------------------------------------------------------------------------TAA-----------CTTGGTTGTTTTT-------------------------------------CAAGCTCAGAGAAGCCAGGTTTGGAAAATTTTTTTTTTTCGAAATTTGAAAGCTGGAATCGTTTGC-----------CCATGTGTGCCCACCAATTAGTTTT-GTTTGCCCACGTCCAGTTTTGAAGATATA-AAAATTCGAAAAAATTTGAAAATTTTCGAACTTAAAAAA----------
droAna3 scaffold_13499:415462-415529 - CAAAAAAA-ATAAAGATGGATTTTTACACACTACTCCC---GC------------------------AGATTCAGGTCAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTATTATTATT----------
dp5 Unknown_group_8:165874-165948 + CGCGAAAG-TAAAGGAAGGCCAATCACAAACAGCTCAGGCAAC------------------------AGACTCTGGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCAATTAAT---ATTTT
droPer2 scaffold_42:602966-603041 - CGCGAAAG-TAAAGGAAGGCCAATCACAAACAGCTCAGGCAAC------------------------AGACTCTGGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCAATTAAT--ATTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCAAAAG-TCAGCGACACGTTTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------TTTGTATTTTTG-----------TTTGATTGTCTATCATTACCCTTACAG------------------------AAGCTCAAAGAAGCTAAAATCAGAAAAATTAAA-TTTTTTAAATTTAAAAGCTGGAATCGTTTGC-------------------------CAATTCTTTTT-TTTTGCCCACGTCCAGTTTTTGAGATCAG-AATTTTCGAAAAAGTACGACGTTTTTCGAAAATCAAAAAAA--AAGTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................TGAGATCAG-AATTTTCGAAAAAGTA.................................25112.001200000042501000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAATT......................................................................................2516.00600000000010050000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAAT.......................................................................................2415.00500000000000050000
..........................................................................................................................................................................................................................................................................................................................TCAG-AATTTTCGAAAAAGTACGACGT...........................2615.00500000000010040000
....................................................................................................................................................................................................................................................................................................TGCCCACGTCCAGTTTTTGAG.......................................................21144.0056000056000000000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2314.00400000000001030000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGT..............................................................20173.8866000062002101000000
......................................................................................................................................................................................................................................................................................................CCCACGTCCAGTTTTTGAGATCAG-AATT.............................................2813.00300000010101000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTTT............................................................21162.1935000030000003020000
.....................................................................................................................................................................................................................................................................................................GCCCACGTCCAGTTTTTGAG.......................................................20142.0028000028000000000000
.....................................................................................................................................................................................................................................ATTTAAAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2612.00200000001010000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------C..........................................................................................21181.562872000047016010000
..................CGTTTCAACAGGCCGCTCTGACAAC------------------------AG...........................................................................................................................................................................................................................................................................................................2711.00100000000000010000
................................................................................................................................................................................................................................................................................................................................ATTTTCGAAAAAGTA.................................1511.00100000000001000000
....................................................................................................................................................................................................................................................................................................TGCCCACGTCCAGTTTTTGAGATCAG-AATT.............................................3011.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................TCAG-AATTTTCGAAAAAGTACGACGTT..........................2711.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................G-AATTTTCGAAAAAGTACGACGTT..........................2411.00100000000010000000
...............................................................................................................................................................................................................................................................................................................AGTTTTTGAGATCAG-AATT.............................................1911.00100000000001000000
......................TCAACAGGCCGCTCTGACAAC------------------------AGA..........................................................................................................................................................................................................................................................................................................2411.00100000010000000000
......................TCAACAGGCCGCTCTG..........................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
...........AGCGACACGTTTCAACAGGCC................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
..................CGTTTCAACAGGCCGCTCTGA.........................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................................................................................................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2911.00100000001000000000
....................TTTCAACAGGCCGCTCTGACAAC------------------------AGA..........................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................TTTTCGAAAAAGTACGACGTTTTT.......................2411.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................TGAGATCAG-AATTTTCGAAAAAGT..................................2411.00100000000001000000
....................................................................................................................................................................................................................................................................................................................TTGAGATCAG-AATTTTCGAAAAAGTA.................................2611.00100000000010000000
.................................................................................................................TTTGTATTTTTG-----------TTTGATTGTCA.............................................................................................................................................................................................................................2311.00100000000100000000
.................ACGTTTCAACAGGCCGCTCTGAC........................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
......................................................................................................................................................................................................................................TTTAAAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2511.00100000010000000000
.........................ACAGGCCGCTCTGACA.......................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
.....................................................................................................................................................................................................................................................CGTTTGC-------------------------CAATTCTTTTT-TTT............................................................................2111.00100000100000000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAAA.......................................................................................2411.00100000000000010000
....................................................................................................................................................TCATTACCCTTACAG------------------------AAGCTCAAAGA..........................................................................................................................................................................2611.00100000000100000000
.......................................CAAC------------------------AGATTCGGGTATGATTC............................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................................................................................................................................................................GTTTTTGAGATCAG-AATTTTCGA........................................2311.00100000000001000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAATTC.....................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................................................TTAAAAGCTGGAATCGTTTGC-------------------------CAATTC.....................................................................................2711.00100000000001000000
.......................................................................................................................................................................................................................................TTAAAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................................................................................................GTCCAGTTTTTGAGATCAG-AATTT............................................2411.00100000000001000000
..........................................................................................................................................................................................................................................AAAGCTGGAATCGTTTGC-------------------------CAA........................................................................................2111.00100000010000000000
.........................................................................................................................TTTG-----------TTTGATTGTCTATCATTACCCT..................................................................................................................................................................................................................2611.00100000000100000000
.........................................................................................................................................................................................................................AAA-TTTTTTAAATTTAAAAGCTGGAATCA.........................................................................................................................2911.00100000000010000000
..............................................................................................................................................................................................................................TTTTTAAATTTAAAAGCTGGAATCGTT.......................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAATTT.....................................................................................26150.8012000000000000111000
.......................................................................................................................................................................................................................................TTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................21200.601200000006006000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAGTTTTTG.........................................................21140.57810000001006000000
.................................................................................................................................................................................................................................TTAAATTTAAAAGCTGGAATCGTT.......................................................................................................................2420.50100000001000000000
..........................................................................................................................................................................................................................................AAAGCTGGAATCGTTTGC-------------------------C..........................................................................................19200.5010100000000000000000
..................................................................................................................................................................................................................................TAAATTTAAAAGCTGGAATCGTTA......................................................................................................................2420.50100000000000010000
..................................................................................................................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTG.....................................................................................................................2520.50100000000000010000
.................................................................................................................................................................................................................................TTAAATTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................2720.50100000001000000000
...............................................................................................................................................................................................................................TTTTAAATTTAAAAGCTGGAATCGTT.......................................................................................................................2620.50100000000100000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------CAAC.......................................................................................2420.50100000000000010000
..................................................................................................................................................................................................................................TAAATTTAAAAGCTGGAATCGT........................................................................................................................2220.50100000000000010000
..................................................................................................................................................................................................................................TAAATTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................2620.50100000000010000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTT.............................................................21160.44700000004102000000
...................................................................................................................................................................................................................................................................................................TTGCCCACGTCCAGTTTTTGA........................................................21140.36500000005000000000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAGT..............................................................21170.35600000013002000000
......................................................................................................................................................................................................................................TTTAAAAGCTGGAATCGTTTG.....................................................................................................................21200.30600010000104000000
......................................................................................................................................................................................................................................TTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................22200.30600010011003000000
...................................................................................................................................................................................................................................AAATTTAAAAGCTGGAATCGT........................................................................................................................21200.20400000001003000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTTT...........................................................23150.20300000000003000000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAG...............................................................20170.18300020001000000000
.......................................................................................................................................................................................................................................TTAAAAGCTGGAATCGTTTGC-------------------------C..........................................................................................22170.18302010000000000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCC.................................................................17180.17300000000003000000
.........................................................................................................................................................................................................................................AAAAGCTGGAATCGTTTGC-------------------------C..........................................................................................20190.16300000010001010000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTTG.........................................................23130.15200000000011000000
...................................................................................................................................................................................................................................AAATTTAAAAGCTGGAATCGTTTGC-------------------------C..........................................................................................26130.15200000000002000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTTGAG.......................................................25130.15200000001010000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................20200.15300000000003000000
...........................................................................................................................................................................................................................................AAGCTGGAATCGTTTGC-------------------------C..........................................................................................18200.15320000000001000000
......................................................................................................................................................................................................................................................................................................CCCACGTCCAGTTTTTG.........................................................17140.14200000000002000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTTTT..........................................................24140.14200000000002000000
.......................................................................................................................................................................................................................................................................................................CCACGTCCAGTTTTTG.........................................................16150.13200000000002000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAGTT.............................................................17200.10200000000002000000
...................................................................................................................................................................................................................................AAATTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................25200.10200000000000020000
......................................................................................................................................................................................................................................TTTAAAAGCTGGAATCGT........................................................................................................................18200.10200000000002000000
........................................................................................................................................................................................................................................TAAAAGCTGGAATCGTT.......................................................................................................................17200.10200000000002000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTTGAGA......................................................26130.08100000001000000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTTGAGAA.....................................................27130.08100000010000000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTTGA........................................................24130.08100000001000000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTTTTG.........................................................25130.08100000000001000000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAGTTTTTGAGA......................................................29130.08100000001000000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTTTTTG.........................................................24130.08100000000001000000
....................................................................................................................................................................................................................................AATTTAAAAGCTGGAATCGTTTGC-------------------------C..........................................................................................25130.08100000000001000000
...................................................................................................................................................................................................................................................................................................TTGCCCACGTCCAGTTTTTGAG.......................................................22140.07100000000001000000
...................................................................................................................................................................................................................................................................................................TTGCCCACGTCCAGTTTTTG.........................................................20140.07100000000001000000
......................................................................................................................................................................................................................................................................................................CCCACGTCCAGTTTTTGAGAT.....................................................21140.07100000000001000000
.....................................................................................................................................................................................................................................................................................................GCCCACGTCCAGTTTTTGAGA......................................................21140.07100000000100000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAGTTTTTGAGA......................................................24140.07100000010000000000
.......................................................................................................................................................................................................................................TTAAAAGCTGGAATCGTTTGC-------------------------CAATTT.....................................................................................27140.07100000000010000000
.....................................................................................................................................................................................................................................................................................................GCCCACGTCCAGTTTTTGA........................................................19140.07100010000000000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTTA...........................................................23150.07100000000000010000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAGTTTT...........................................................24150.07100000000000010000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTT............................................................22150.07100000000001000000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAGTTT............................................................23150.07100000001000000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTTTT...........................................................22160.06100000001000000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTTTA...........................................................22160.06100000000000010000
.................................................................................................................................................................................................................................................................................................TTTTGCCCACGTCCAGTTTTTT.........................................................22160.06100000000000010000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTT............................................................20160.06100000000001000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTT...........................................................21160.06100000000001000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAG...............................................................19170.06100000001000000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTT.............................................................19170.06100000000001000000
.........................................................................................................................................................................................................................................................................................................ACGTCCAGTTTTTGA........................................................15170.06100000000001000000
.................................................................................................................................................................................................................................................................................................TTTTGCCCACGTCCAGTTTT...........................................................20190.05100000000001000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAGTTTT...........................................................19200.05100000000001000000
....................................................................................................................................................................................................................................AATTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................24200.05100000000001000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCA................................................................17200.05100000000001000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAG...............................................................15200.05100000001000000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCA................................................................16200.05100000000001000000
.....................................................................................................................................................................................................................................ATTTAAAAGCTGGAATCGTTTGC-------------------------...........................................................................................23200.05100000000001000000
....................................................................................................................................................................................................................................AATTTAAAAGCTGGAATCGTT.......................................................................................................................21200.05100000010000000000
droSec2
TGCAAAAG-TCAGCGACACGTGTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------TTTGTATTTTTG-----------TTTGATTGTCTATCATTACCCTTACAG------------------------AAGCTCAAAGAAGCTAAAATCAGAAAAATCAAA-TTTTTTAAATTTGAAAGCTGGAATCGTTTGC-------------------------CAATTCGTTTT--TTTGCCCACGTCCAGTTTTTGAGATCAG-AATTTTCGAAAAAGTACGACGTTTTTCGAAAATCAAAAAAA--AAGTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................AAAGTACGACGTTTTTCGAA...................2011.0010010
............................................................................................................................................ATTGTCTATCATTACCCTTACAG------------------------.....................................................................................................................................................................................2311.0011000
..........................................................................................................................................................................................................................................................................................................................................AAGTACGACGTTTTTCGAAA..................2011.0010100
.........................................................................................................................................................................................................................................................................................................................ATCAG-AATTTTCGAAAAAGT..................................2011.0010100
...................................................................................................................................................................................................................................AAATTTGAAAGCTGGAATCGTT.......................................................................................................................2240.5021100
dm3
TGCAAAAG-CCAGCGACGGGTTTCAACAGGCCGCTCTGACAAC------------------------AGATTCGGGTATGATTCA----------------------------ATTGTATTTGTC-----------TTTG--TGTCTATC------CTTGCAG------------------------AAGCTCAAAGAAGCTGGGTTCGGAAAAATGGAA-TTTTCGAAATTTGAAAGCTGGAATCGTGTG---------------------CCCACCAATTAGTTTTTTTTTGTCCACGTCCAGTCTTTGAGATCTG-AATTTTCAAAAAAGTTC----------GATAATCAAAAAGT--GTACTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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TGCAAAAG-CCAGCGACGGGTTTCAA......................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
ATACGAAT-TCAG--------------------------------------------------------------------CTCG----------------------------TTTGTATTTTTTGAGGATCTTGGTTAA--TGTCGATTCTTGAATTC-----------TTGACAATG-------TGAGCTCAAAGAAGCTGGGTTCGGTAAAATCTAG-TTTTTGAAATTTAAAAGGTGGAATCGTTTG---------------------CCCACCAATTAGTTTT-TTTTGCCCACGTC--GTTTTAAAGAT--G-AAATTTTAACATTTTTC----------GAAAATCAAAAAAT--TGACTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................TGACAATG-------TGAGCTCAAAGAAGCTGGG...................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................................................................................................GAAAATCAAAAAAT--T.....1570.1410000001
....................................................................................................................................................................................................................................................................................CCAATTAGTTTT-TTTTGCCCA......................................................................21180.0611000000
droYak3
TGCC----------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTGGCTTCATAG-----------------------CAAGCTCAAAGAAGCTGGGTCCGCAAAAATTGAA-TTTTTGAAATTTGAAAGGTGAAATCGTTTG---------------------CCCACCAATTAGTTTT-TTTTGCCCACGTCCAGTTTTCAAGATATG-AAATTTCGAAAAATTTC----------GAACTTCAAAAA----------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................TCCAGTTTTCAAGATATG-AAATTTCGAA.......................................28140.7911010000010000
....................................................................................................................................................................................................................................................................................................................TCAAGATATG-AAATTTCGAAAAATT..................................2530.67202000000000
............................................................................................................................................................................................................................................................................................................TCCAGTTTTCAAGATATG-AAATTTCGA........................................27140.50707000000000
.............................................................................................................................................................................................................................................................................................TTT-TTTTGCCCACGTCCAGTTTTCAAGA......................................................28150.13200000000002
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTCAAGA......................................................26150.13201010000000
..................................................................................................................................................................................................................................................................................................TTTGCCCACGTCCAGTTTTCAAGATA....................................................26140.07101000000000
........................................................................................................................................................................................................................................................................................................CACGTCCAGTTTTCAAGATATG-AAAT.............................................26140.07101000000000
.................................................................................................................................................................................................................................................................................................TTTTGCCCACGTCCAGTTTTCAAGATA....................................................27140.07101000000000
............................................................................................................................................................................................................................................................................................................TCCAGTTTTCAAGATATG-AAATTT...........................................24140.07101000000000
.......................................................................................................................................................................................................................................................................................................CCACGTCCAGTTTTCAAGATATG-AAA..............................................26140.07100000010000
.......................................................................................................................................................................................................................................................................................................CCACGTCCAGTTTTCAAGATATG-AA...............................................25140.07101000000000
...................................................................................................................................................................................................................................................................................................................TTCAAGATATG-AAATTTCGAA.......................................21140.07101000000000
......................................................................................................................................................................................................................................................................................................CCCACGTCCAGTTTTCAAGATATG-AAATT............................................29140.07100100000000
.............................................................................................................................................................................................................................................................................................................CCAGTTTTCAAGATATG-AAATTTCGAA.......................................27140.07101000000000
.............................................................................................................................................................................................................................................................................................................CCAGTTTTCAAGATATG-AAATTT...........................................23140.07101000000000
..........................................................................................................................................................................................................................................................................................................CGTCCAGTTTTCAAGATATG-AAATT............................................25140.07101000000000
...............................................................................................................................................................................................................................................................................................................AGTTTTCAAGATATG-AAATTTCGAA.......................................25140.07101000000000
..........................................................................................................................................................................................................................................................................................AGTTTT-TTTTGCCCACGTCCAGTT.............................................................24150.07101000000000
........................................................................................................................................................................................................................................................................................TTAGTTTT-TTTTGCCCACGTCCAGTT.............................................................26150.07100100000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTTTCAAGAC.....................................................27150.07101000000000
.........................................................................................................................................................................................................................................................TG---------------------CCCACCAATTAGTTTT-TTTTGCC........................................................................25150.07101000000000
............................................................................................................................................................................................................................................................................................TTTT-TTTTGCCCACGTCCAGTTTTCA.........................................................26150.07101000000000
.................................................................................................................................................................................................................................................................................................TTTTGCCCACGTCCAGTTTTCAAGA......................................................25150.07101000000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTTTTCAAGA......................................................27150.07101000000000
..................................................................................................................................................................................................................................................................................CACCAATTAGTTTT-TTTTGCCCACGTCC.................................................................28160.06101000000000
......................................................................................................................................................................................................................................................GTTTG---------------------CCCACCAATTAGTTTT-TTT............................................................................24180.06101000000000
...............................................................................................................................................................................................................................................................................................T-TTTTGCCCACGTCCAGTTT............................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................TT-TTTTGCCCACGTCCAGTT.............................................................20200.05101000000000
...............................................................................................................................................................................................TCAAAGAAGCTGGGTCCGCAA............................................................................................................................................................21200.05100000010000
...............................................................................................................................................................................................TCAAAGAAGCTGGGTCCGCAAAAAT........................................................................................................................................................25200.05101000000000
.............................................................................................................................................................................................GCTCAAAGAAGCTGGGTCCGC..............................................................................................................................................................21200.05101000000000
......................................................................................................................................................................................................................................................GTTTG---------------------CCCACCAATTAGTTTT-...............................................................................21200.05101000000000
............................................................................................................................................................................................AGCTCAAAGAAGCTGGGTCCGCA.............................................................................................................................................................23200.05100100000000
droEug1
TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCAAAAAGCCGGCTGC-----------------TTTTTCAGCAGCCATCTCGCTCGCTCTCATTAGAAACT---------------------T-------------TTGGCATTTGTATTTGTG--------------AATTATTTA--------------ACAATCTGTTGATAATT-------TCAGCTTAATGAAGCTGAGTTCGCTAAAATGAAA-TTTTTGAAATTTGAAAACGAGAATCGTTTGT-----------CCACGTTTGTCCACCTTTTAGTTTT--TTTGTCCACGTCCAGTTTCAAATATATG-AAATTTCGAAAATGTTT----------GTAAATTAAATAGT--AAAATTSizeHit CountTotal NormTotal
No Reads
droTak1
AGG---------------------------CTGCTTCGACAAC------------------------GG-CACT-----GGTTCGACTTAACTTTTCTTAACATGTCATGGCAG---------------------------------------------------------------TGGTATCACCGAGCTCAGAGAAGCTGGGTCGGGTAAAATTAAA-ATTTCGAATTTTGAATATGGGAATCGTTTGTCCACCGTTTGTCCACGTTTGACCACCTTTTAGTTTT-TTTTGTCCACGTCCAGTTTCGAAAATATG-GGATTTCAAAAATTTTC----------GAAAATCAAAAAGTTGAAATTTSizeHit CountTotal NormTotal
No Reads
droEle1
GGGTAGT------------------------------------------------------------------------CATTCGGGCATATTTTTGTTAACTTT--------------------------------------ATTCA--------------GCAA-----------TG--ATCATCCAGCTCAAAGAAGTTGGGTCGACTAAAATCGAA-TTTTCGAAATTTGAAAAGCGGAATCGTTTGCCCATTTTTTGCCCACTTTTGCCCACCAATTAGTTTT-TTTTGCCCACCTCCAGTTTTGAAAATATGGGAAGTTCGAAAATTTTCGAAGATTTTCGAAAACATAAAA----------SizeHit CountTotal NormTotal
No Reads
droRho1
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAAGAAGCTGGGTCGACAAAAATAAAA-TTTTCGAAAATTGAATAGCTTAATCGTTTGCCCATTTTTTGCCCATGTTTGCCCACTTTTTAATTTT-TTTTGCCCACCTTTAGTTTTGAAAATATGGAATCTTCGAAAATTTTCGAACATTTTCGAAAACATAAAA----------SizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAAGAAGTTGGGTCCAAAAAAATTTCG-AATTTCAATTTTGAAAATTGGAATCGTTTGACCCTCGTTTGACCACGTTTGCCCACCTTTTAGTTTTTTTTTGAC---CCCCCGTTTCGAAGATATC-GAATTTCGAAAATTTTC----------GAAAAT--------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
ATTT----------------------------------------------------------------------------------------------------------------------TAA-----------CTTGGTTGTTTTT-------------------------------------CAAGCTCAGAGAAGCCAGGTTTGGAAAATTTTTTTTTTTCGAAATTTGAAAGCTGGAATCGTTTGC-----------CCATGTGTGCCCACCAATTAGTTTT-GTTTGCCCACGTCCAGTTTTGAAGATATA-AAAATTCGAAAAAATTTGAAAATTTTCGAACTTAAAAAA----------SizeHit CountTotal NormTotal
No Reads
droAna3
CAAAAAAA-ATAAAGATGGATTTTTACACACTACTCCC---GC------------------------AGATTCAGGTCAGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTATTATTATT----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
dp5
CGCGAAAG-TAAAGGAAGGCCAATCACAAACAGCTCAGGCAAC------------------------AGACTCTGGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCAATTAAT---ATTTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................CACAAACAGCTCAGGCAAC------------------------AGACTCTGA....................................................................................................................................................................................................................................................................................................2812.0020200000000
CGCGAAAG-TAAAGGAAGGCCAATC.......................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
CGCGAAAG-TAAAGGAAGGCCAATCACAAACAGCTCAGGCAAC------------------------AGACTCTGGTATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAATCAATTAAT--ATTTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................CAAACAGCTCAGGCAAC------------------------AGACTCTGAA...................................................................................................................................................................................................................................................................................................2711.001100000
................................GCTCAGGCAAC------------------------AGACTCTG.....................................................................................................................................................................................................................................................................................................1911.001010000

Generated: 05/19/2015 at 02:28 AM