ID:

dsi_24172

 Coordinate:

3l:7184841-7184894 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7184615_7184840_+]; CDS [3l_7184615_7184840_+]; CDS [3l_7184895_7185687_+]; exon [3l_7184895_7185687_+]; intron [3l_7184841_7184894_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------##################################################
CATCACTCAACCGATGTATTTGCTACGCTGGATTTCACTGGAAGAACGATGTGAGATAAGGTCTCTGCCCTCGATTGCTGTTATTTAATAATGTGCTTACCTAGTTTGTGCGGAAAAAATGGATGACATTCTGCAGGCGGAGACACCATTCCAG
**************************************************............((............((((((((...)))))).))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
.............................................................................................TGCTTACCTAGTTTGTGCGGAAAAAA................................... 26 0 1 2.00 2 1 1 0 0 0 0 0
................TATTTGCTACGCTGGATTTCACTAGAAGA............................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TGCTTACCTAGTTTGTGCGGAAAAA.................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................AAATGGATGACATTCTGCAGGCG............... 23 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TACCTTAGTTGTGCGGAAAAAA................................... 22 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TGCTTACCTAGTTTGTGCGGAAAA..................................... 24 0 1 1.00 1 0 0 1 0 0 0 0
...CACTCAACCGATGTATTTGC................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
..................TTTGCTACGCTGGATTTCACTGGAAGAA............................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................AAAAATGGATGACATTCTGCAGGC................ 24 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................ATGACATTCTGCAGGCGGAGA........... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................TGCCCTCGATTGCTTGTAT...................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0
................................................................................................TTAGCTAGTTTGTGGGGTAAA..................................... 21 3 3 0.33 1 0 0 1 0 0 0 0
...........................................................................................TGTGCTTACCTAGTCTTT............................................. 18 2 3 0.33 1 1 0 0 0 0 0 0
.................................................TGTGAGATAAGGTAGATGCC..................................................................................... 20 3 4 0.25 1 0 0 0 0 1 0 0
.............................................................................................TGCTTACCTAGTCTTTGA........................................... 18 3 20 0.20 4 4 0 0 0 0 0 0
..................................................................GCCCTCGATTGCTTTT........................................................................ 16 1 5 0.20 1 0 0 0 0 0 1 0
.................................................................................................................................TCTCCGGGCGGAAACACCA...... 19 3 14 0.14 2 0 0 0 0 0 0 2
................................................................................................................................TTGTACAGGCGGAGACA......... 17 2 9 0.11 1 0 1 0 0 0 0 0
..............................GACTTCACTGCTAGAACGA......................................................................................................... 19 3 10 0.10 1 0 0 0 0 1 0 0
....................................................................................................CTCGATCGTGCGGAAAAAA................................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTAGTGAGTTGGCTACATAAACGATGCGACCTAAAGTGACCTTCTTGCTACACTCTATTCCAGAGACGGGAGCTAACGACAATAAATTATTACACGAATGGATCAAACACGCCTTTTTTACCTACTGTAAGACGTCCGCCTCTGTGGTAAGGTC
**************************************************............((............((((((((...)))))).))......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
.................................................ACACTCTATTACAGA.......................................................................................... 15 1 8 0.13 1 1

Generated: 04/23/2015 at 07:18 PM