ID:

dsi_24134

Coordinate:

3r:10304745-10304894 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGTGTGATTTGGTAACTATCAGAGGGAAAACAGCTTATGATATGAGCTGGATTGGTATGGAATGTAATCCCAATGTGATGCAATCTAGATACTTTATAAGTTCGCAGTAATAATAGCTTTACTGCTTATATAACGTAGTTCAGAATGTCCAATGATTGATAATCTTACTAAATATGCACCGCTTCCCTTCTATTTTATAGGCCACCCTTTACAACAAAAGCTCTGGCGAAGTGGGCAGCCTGATATCGGC ************************************************.....(((((((((..........(((.((((.....((.((((...))))))(((((((........)))))))..........((((..(((.((((........)))).))).))))....)))).)))........))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	M023 head
.............................................................................................................................................................................................................................TCCGGCGAAGTGGGCAGCCTGATATCGGC	29	1	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................ACCCTTTACAACAAAAGCTCTGGCG......................	25	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................GTTCAGAGTGTCCGACGATT.............................................................................................	20	3	5	0.20	1	0	0	0	0	1	0
.........................................................TGGAATGTACTCCCA..................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................GCTCCGTCGAAGTGGGCA.............	18	2	6	0.17	1	0	0	1	0	0	0
....................................ATGGTATGAGCTGTGTTGGT..................................................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0	0
.......TTTGGTAACTGTCAGA...................................................................................................................................................................................................................................	16	1	8	0.13	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................AGCTCCGTCGAAGTGGGC..............	18	2	9	0.11	1	0	0	0	0	0	1
..........................................................................................................................TGATTATATGACGTAGT...............................................................................................................	17	2	12	0.08	1	0	0	1	0	0	0
....................................................................................................................................................................................GCTTCCCGTCTATTGT......................................................	16	2	20	0.05	1	0	0	1	0	0	0

Anti-sense strand reads

ACACACTAAACCATTGATAGTCTCCCTTTTGTCGAATACTATACTCGACCTAACCATACCTTACATTAGGGTTACACTACGTTAGATCTATGAAATATTCAAGCGTCATTATTATCGAAATGACGAATATATTGCATCAAGTCTTACAGGTTACTAACTATTAGAATGATTTATACGTGGCGAAGGGAAGATAAAATATCCGGTGGGAAATGTTGTTTTCGAGACCGCTTCACCCGTCGGACTATAGCCG ************************************************.....(((((((((..........(((.((((.....((.((((...))))))(((((((........)))))))..........((((..(((.((((........)))).))).))))....)))).)))........))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
.........................................................................ATACTACGTTAGATCTA................................................................................................................................................................	17	1	3	0.67	2	2	0	0
...............TATAGTATCTCTTTTGTCGAAT.....................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0
...........................................................................................................................................................AACTATTAGGATGATTT..............................................................................	17	1	3	0.33	1	1	0	0
...................GTCTCTCTTTTGTCGA.......................................................................................................................................................................................................................	16	1	9	0.11	1	1	0	0
...............................TCGGATGCTATACTTGACC........................................................................................................................................................................................................	19	3	14	0.07	1	0	0	1
..................................................................TAGGGTTACATAACGTT.......................................................................................................................................................................	17	2	20	0.05	1	0	0	1

Generated: 04/24/2015 at 10:41 AM