ID:

dsi_24112

 Coordinate:

3r:4416716-4416865 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.9 -13.8 -13.5

Flybase annnotation

five_prime_UTR [3r_4416807_4419031_+]; exon [3r_4416807_4419238_+]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------#############################################################################################################
GTCACTCGATCGCGTGGGCTCAGAGTTAAAACTTCAGTTTGGCCGATAAGGTTAGTACTCTTGTCGAGTGTTGCCAGATTTCGGCAAGTAAAAGAAGAGAGAGTGGCCGCAGGTTGCCACATTGGGCACAGACGAAAAGACAGTGTGCGTGTGAGAGGCGAAAGAGTGTGCGTGCAAAAGAAAGCAGCTGGTGGCAGAATCTCAAATATTGTGAGGAAAATTAATAAACAAAGAGCTGCGCTCACGGCTG
**************************************************************************************...................(((......((((((((((................))))))).))).....))).****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 M024
male body		 M053
female body
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...........................................CGATAAGGTTAGTACTCT............................................................................................................................................................................................. 18 0 1 3.00 3 0 2 0 1 0 0 0 0 0
...ACTCGATCGCGTGGGCT...................................................................................................................................................................................................................................... 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...ACTCGATCGCGTGGGCTCA.................................................................................................................................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0
....CTCGATCGCGTGGGCTCAGAG................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..CACTCGATCGCGTGGGCT...................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................AGAATCTCAAATATTGTGAGGA................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................TGTGCGTGTGAGAGGCG.......................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..CACTCGATCGCGTGGGCTCAGA.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................ACAGTGTGCGTGTGAGAGG............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.TCACTCGATCGCGTGGG........................................................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................GTTAAAACTTCAGTTTGGC............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...ACTCGATCGCGTGGGCTCAGAG................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................CGATAAGGTTAGTACTCC............................................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................CAGAGTTAAAACTTCAGTTTGGC............................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...ACTCGATCGCGTGGGCTCAGAGT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
GTCACTCGATCGCGTGGGCC...................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........ATCGCGTGGGCTCAGAGTTAAAACTTC....................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...ACTCGATCGCGTGGGCTC..................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................AGTTAAAACTTCAGTTTGGC............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................GCAGCTGGTGGCAGAATC................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................AGTAAAAGAAGAGAGAG................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................AAGTAAAAGAAGAGAGAGTGG................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.TCACTCGATCGCGTGGGCT...................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTTAGTACTCTTGTCGAG...................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................ACAGTGTGCGTGTGAGA.............................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................TTCGGCAAGTAAAAGAAGAGAGAG................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TTTGCGTGTGAGAGGC........................................................................................... 16 1 6 0.67 4 4 0 0 0 0 0 0 0 0
..TACTCGATCGCGTGGGCC...................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
........................................................................................TAAAAGAAGAGAGCTTGGC............................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................TTGCGTGTGAGAGGC........................................................................................... 15 1 9 0.22 2 2 0 0 0 0 0 0 0 0
...............................................................TCGACTGTTGCCAGATGT......................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGGAATTTAACAAACAAAGAG............... 21 3 6 0.17 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................TGAACACAGCTGGTGGCAGA.................................................... 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0
...........................................CGTTAAGGGTGGTACTCT............................................................................................................................................................................................. 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0
............................................................................................................................................................................................................TATATTGTGAGGAAAA.............................. 16 1 12 0.08 1 0 0 0 0 0 0 0 0 1
........................................GGGCGATAAGGTTCGTA................................................................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CAGTGAGCTAGCGCACCCGAGTCTCAATTTTGAAGTCAAACCGGCTATTCCAATCATGAGAACAGCTCACAACGGTCTAAAGCCGTTCATTTTCTTCTCTCTCACCGGCGTCCAACGGTGTAACCCGTGTCTGCTTTTCTGTCACACGCACACTCTCCGCTTTCTCACACGCACGTTTTCTTTCGTCGACCACCGTCTTAGAGTTTATAACACTCCTTTTAATTATTTGTTTCTCGACGCGAGTGCCGAC
******************************************************************************************...................(((......((((((((((................))))))).))).....))).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
........................................................................................................................................TTCTGTCACACGCACACT................................................................................................ 18 0 1 7.00 7 7 0
............................................................................................................................CCGTGTCTGCTTTTCTGT............................................................................................................ 18 0 1 2.00 2 0 2
............................................................................................................................CAGTGTCTGCTTTTCTGT............................................................................................................ 18 1 1 1.00 1 0 1
.......................................................................................................................................TTTCTGTCACACGCACACT................................................................................................ 19 0 1 1.00 1 1 0
..............................................................................................................................................................................................CACCGTCTTAGAGTTTATAACA...................................... 22 0 1 1.00 1 0 1
................................................................................................................................................................................................CCGTCTTAGAGTTAATTAC....................................... 19 2 4 0.25 1 0 1

Generated: 04/24/2015 at 06:42 AM