ID:

dsi_2411

 Coordinate:

2r:5849568-5849671 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5849510_5849567_-]; exon [2r_5848826_5849567_-]; CDS [2r_5849672_5849780_-]; exon [2r_5849672_5849780_-]; intron [2r_5849568_5849671_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------##################################################
TTCAACTTCGTCAGCTCGTTCCTGTACCTGCTTTCGTTCGTGTTTATCGGGTGAGCTTAGCGCCCTGAACCGGCACTACCACAATGGGAGGAGGAAAGCCCCTCTCCAACCTGCTAATTGATCACACATTCCACCTTCCCCTACCCCCTTACAGATATGTCTTGCGGATCAAATACAGGCACAAGCAGCACTACGCCAAGGTTC
**************************************************((((..((((((((.......)))..........(((((((.((....)))))).)))....)))))....)))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
......................................................................................................TCTCCAACCTGCTAATTGATCAAACA............................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................TGCGGATCAAATACAGGCACAAGCAGCA.............. 28 0 1 1.00 1 0 1 0 0 0 0 0
........CGTCAGCTCGTTCGTG.................................................................................................................................................................................... 16 1 3 0.67 2 0 0 1 0 1 0 0
...AACTTCCCCAGTTCGTTCCTG.................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0
.......TCGTGAGTTCGTTCCT..................................................................................................................................................................................... 16 2 20 0.20 4 0 0 4 0 0 0 0
..............CTCGTTGCTGTACCT............................................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0
....ACTTCGTCCGCTCGT......................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0
..........................................................................ACTAGAACAATGGGATGAGG.............................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0
.......TCGTCAGCTCGTTCGTGA................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
.............................................ATCGTGTGAACTTAGCG.............................................................................................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 1
.....CTTCGTCAGCTCGTG........................................................................................................................................................................................ 15 1 9 0.11 1 1 0 0 0 0 0 0
.......TCCTCAGTTCGTTCCTG.................................................................................................................................................................................... 17 2 11 0.09 1 0 0 1 0 0 0 0
.......TCGTCAGTTCGATCCTG.................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0

Anti-sense strand reads

AAGTTGAAGCAGTCGAGCAAGGACATGGACGAAAGCAAGCACAAATAGCCCACTCGAATCGCGGGACTTGGCCGTGATGGTGTTACCCTCCTCCTTTCGGGGAGAGGTTGGACGATTAACTAGTGTGTAAGGTGGAAGGGGATGGGGGAATGTCTATACAGAACGCCTAGTTTATGTCCGTGTTCGTCGTGATGCGGTTCCAAG
**************************************************((((..((((((((.......)))..........(((((((.((....)))))).)))....)))))....)))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M023
head
 M024
male body		 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
..............................................................GGGACTTCACAGTGATGGTGT......................................................................................................................... 21 3 2 26.50 53 46 0 3 4 0 0 0 0 0
...............................................................................................................................................GTGGGAACCTCTATACAGAAC........................................ 21 3 2 1.00 2 0 0 0 0 0 1 1 0 0
.................................................................................................................................................GGGAACCTCTATACAGAAC........................................ 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................GGACTTCACAGTGATGGTGT......................................................................................................................... 20 3 6 1.00 6 5 0 1 0 0 0 0 0 0
..............................................................................................TTTCAGGGAGCGGTTGGA............................................................................................ 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................TGTAAGGTGGAAGGGGATGG........................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........GTCGAGCAAGGACATGGA............................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................GGGACTTCGCAGTGATGGTGT......................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATGTCCGTGTTCGTCGTGATGCGGT...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................GGGACTTCACAGTGATGGT........................................................................................................................... 19 3 11 0.64 7 4 0 0 3 0 0 0 0 0
..............................................................GGGACTTCACAGTGATGGTG.......................................................................................................................... 20 3 6 0.50 3 3 0 0 0 0 0 0 0 0
.........................CGGACGAAAGCAAGAACTAAT.............................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0
..............................................................................GGTGTTACCCTCATAGTTTCG......................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0
..................................................CACTCGAATCGCGTTAC......................................................................................................................................... 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GGAATCTCTCTACAGAGC........................................ 18 3 17 0.12 2 2 0 0 0 0 0 0 0 0
..............................................................GGGACTTGGCCGTCTTG............................................................................................................................. 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0
.........................TGGACGAAAGCATGGA................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................................TCGGGTAGGGGTTGGAC........................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 01:18 AM