dsi_24093

exon [3r_22536251_22537849_-]; CDS [3r_22536251_22537849_-]; intron [3r_22537850_22538606_-]

Name	Class	Family	Strand
(CCCGAA)n	Simple_repeat	Simple_repeat	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AGAAGATTTTGGATCAGCAGTGCCAGAGCGAAGTCGATCGGTGCGGTGGGGGTGCGGCGGTGCGGTGATCGGGTTCGGGTTCGGGTTCAATGGAGGATCCAATCGGATTGCCTTCGGGTGACTAATTAAAGAAAACTCAAAGCTAATTCGTGTCTCTATCTTTCTGCCTTTCTGCTCTCCATTTGGATGCAACCGTACAGCGGCACCTGTCCAGATTCCCAGCACGGGTCCGGGTGCGCAGGTCTCCCTG **************************************************************************************************...(((((((.(((.((((..((......))...)))).))).)))))))...........................(((....)))..***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M023 head	M025 embryo	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body
....GGTTTTGGATCAGCAGT.....................................................................................................................................................................................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................AATCGGATTGCCTTCGGGT...................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................................................................CTGCTCTCCATTTGGATG.............................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
............................................................TGCGGAGATCGGTTTCGGGT..........................................................................................................................................................................	20	2	2	0.50	1	0	0	0	1	0	0	0
..............................................................CGGTGATCGGGTTCC.............................................................................................................................................................................	15	1	4	0.25	1	0	0	0	0	0	1	0
..........................................................................................................................................................................TCTGCTATCCATTCGGAT..............................................................	18	2	4	0.25	1	0	0	0	0	1	0	0
..........................................................TGTGCGGTGATGGGGTACGG............................................................................................................................................................................	20	3	4	0.25	1	1	0	0	0	0	0	0
.......................................................GGCCGTGTGGTGATCTGGTT...............................................................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	1
..AAAATTTTGGATGAACAGTGC...................................................................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0
...........................................................GTGCGGTGAAGGGGTACGGG...........................................................................................................................................................................	20	3	12	0.08	1	1	0	0	0	0	0	0
.......................CAGCGCGATGTCGATCG..................................................................................................................................................................................................................	17	2	18	0.06	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGCGGCACCTGTCCA.....................................	16	2	20	0.05	1	0	0	0	0	1	0	0

TCTTCTAAAACCTAGTCGTCACGGTCTCGCTTCAGCTAGCCACGCCACCCCCACGCCGCCACGCCACTAGCCCAAGCCCAAGCCCAAGTTACCTCCTAGGTTAGCCTAACGGAAGCCCACTGATTAATTTCTTTTGAGTTTCGATTAAGCACAGAGATAGAAAGACGGAAAGACGAGAGGTAAACCTACGTTGGCATGTCGCCGTGGACAGGTCTAAGGGTCGTGCCCAGGCCCACGCGTCCAGAGGGAC ***********************************************************...(((((((.(((.((((..((......))...)))).))).)))))))...........................(((....)))..**************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	M053 female body	SRR553485 Chicharo_3 day-old ovaries
.........ACCTAGTCGTCACGG..................................................................................................................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................AGAGATAGAAAGAAGGAA................................................................................	18	1	2	0.50	1	1	0	0	0	0
............................................................ACGCCACTAGATCAAGCCCT..........................................................................................................................................................................	20	3	2	0.50	1	0	1	0	0	0
..................................................................................................................................................................AGACAGAAACACGAGCGGTAAACCT...............................................................	25	3	2	0.50	1	1	0	0	0	0
............................................................................................................................TAATTTCTTTTGAGT...............................................................................................................	15	0	7	0.43	3	0	0	3	0	0
..........................................................................................ACCTCCTTGGCCAGCCTAA.............................................................................................................................................	19	3	13	0.08	1	0	0	0	1	0
........................................................................................................................TGATCAATGTCTTTTGATTTT.............................................................................................................	21	3	13	0.08	1	1	0	0	0	0
.............................................CACTCCCAGGCCGCCA.............................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................TCAAAGGGTCGTGCGAAGG...................	19	3	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................AGGGTAGTGCCAAGGCCG................	18	3	20	0.05	1	1	0	0	0	0
...........CTAGTCGTCGCGGTC................................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1
..................................................................................................................................................................AGACGGAAAGACAAGTG.......................................................................	17	2	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:22537800-22538049 -	dsi_24093	AGAA---------GATTTT-G-GATCAGC-------AGTGCCAGAGCGAAGTCGATCGGTGCGGTGGGGGTGCG--GCGGTGCGGTGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTCT--ATCTT-----------------------------TCTG-CC------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTCTCCCTG
droSec2	scaffold_13:1850298-1850547 -		AGAA---------GATTTT-G-GATCAGC-------AGTGCCAGAGCGAAGTCGATCGGTGCGGTGGAGGTGCG--GCGGTGCGGTGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTTT--ATCTT-----------------------------TCTG-CT------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTCTCCCTG
dm3	chr3R:23096046-23096297 -		AGAA---------GATTTT-G-GATCAGC-------ACTGTCAGAGCGCAGTCGATCGGTGCGGTGAGGGTGCG--GCGGTGCGGGGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAATTCAAA------------------------GCTAATTCGTG-----------TTTCTCTATCTT-----------------------------TCTT-TA------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGACACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTATCCCTG
droEre2	scaffold_4820:4937878-4938102 +		AGAA---------GATTTT-G-GATCAGC-------AA-------------TCAATCGGAGCGCAGGGGGTGCG--GTGATGCGGGGATCGGGT-------TCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTCTCT-------------------------------------G-TCTTCT------------------TGCTCTCC-ATTTGGATGCA---------------------------------------TCCGTG------------------------------------CAGCAGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAAATCTCCCTG
droYak3	3R:23397441-23397664 +		AGAA---------GATTTT-G-GATCAAC-------AG-------------T----CAGCGCAGTAGGAGTGCGAGGTGGTGCGGGGATCGGGT-------TCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAGA---AAAACTCAAT------------------------GCTAATTCGTG-----------TCTCTCT-------------------------------------G-TCTTCT------------------TGCTCTTC-ATTTGATTGCA---------------------------------------TCCGTG------------------------------------CAGCAGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCTCAGATCTCCCTG
droEug1	scf7180000409770:565792-565977 -		AGAT---------GATTTTTT-GATCGGCGT--GCG-------------------------------------------------------------GGGTTCGGGC---TCAGTGGAGGATCCA-----ATCGGT-----TCAGATTGCCTTCG---GGTGACTAATTAAAT----AAAAGTCATT------------------------GCTAATTTGTA-----------TCTCTCT-------------------------------------TTTCTTCT-----------ATCT-------TTTC-GT------TCA---------------------------------------TCCGTA------------------------------------CA---GCACCTGGCCA------------------------------------------------------------------------GATTCCCAGT---ACGGGT-CCA------ACGCAAGTCTCCTTG
droBia1	scf7180000302075:1853627-1853835 +		AGAA---------GATTTTCG-GATAGGCGGG-----------------------------------------------------------------G------GGT---TCAGTGGAGGATCGCTTTGGATCGGCTCGTATTGGATCGCCTTCG---GGTGACTAATTAAAG----AAAAGTCATT------------------------GCTAATTTGGA-----------TCTCTCT-------------------------------------G-TGTTCT---------------------------------------------CTCGTTTTTTTATGCTTTTTTCTTCGGTTTTCCACTGA------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------GGTGCCCAGCTCGACGGGT-CCG------GCGCAAATCTCCCTG
droTak1	scf7180000415700:478893-479070 -		AGAA---------GATTTTGG-GATCCCAGG--------------GG--------------------------------------------------G------AAT---TCAGGGG--GTTCAG-----A----------TCGCATCGTCTTTG---AATGACTAATTAAAG----AAAAGTCACTT-----------------------GCTAATTTGTA-----------TCTTTTT-------------------------------------TCTCT-CT----------CATCT--------TTCAAT-TT--CCCA----------------------------------------TCTTT------------------------------------CA---GCACCTGTGCC------------------------------------------------------------------------CATTTCCAGTGCGACGGCT-CCC------CCGCAAATCTCCTTG
droEle1	scf7180000491261:1566953-1567113 -		AGAA---------GATTTTTG-GAGCAGCGGGGGCG-------------------------------------------------------------AG-----GTT---TTGGTGGAGGATCA------G----------T--------------------ACTAATTAAAGG---AAAAGTCAATT-----------------------GCTAATTTT-G-----------T------ATCTT---------------------------------CTCTTCT-------------------A-TTTTC-ATTTG--CCCA---------------------------------------ACCTTG------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------AATTCCAAGC---ACGGGT-CCG------GCGCAAATCTCCTTG
droRho1	scf7180000780007:49682-49842 +		AGAA---------GATTTTTG-GAGCAGCGGGGGCG-------------------------------------------------------------G------CGT---TAAGTGGAGGATC--------------------GGATCGCCTTCG---GGTGACTAATTAAAG----AAAAGTCAAAC-----------------------GCTAATTTT-G---------TATCTTTCT-------------------------------------G-TT------------------GT-------------------TCAC---------------------------------------CTTTG------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------GATTCCAAGT---ACGGGT-CCG------GCGCAAATCTCCTTA
droFic1	scf7180000453826:619028-619186 +		AGAA---------GATTTTGTGGATCGGCGG--GCG-------------------------------------------------------------G------GGT---TCAGCGGAGGATA--------------------AGATTGCCTTTG---GCTGACTAATTAAAG----AAAAGTCAAAT-----------------------GCTAATTTTTA-----------CTTTTTT-------------------------------------G-TC-------------------------------GT------TTAC---------------------------------------CTATA------------------------------------TA---GCACCAGTCCA------------------------------------------------------------------------GATTCCAAGC---ACGGGT-CCA------GCGCAAATCTCCTTA
droKik1	scf7180000302705:150625-150858 -		AAAACCAAAAAAAGATCTTAG-GCGGAGGA--------------------G-------------------------GAGGTGGAGAGATCGATT-------TTTCAT---TTACTTGAGGATCACT---GACTGCCTTGCCCTCGCCCGCCTTCGCATGATGACTAATTAAAG----AAAACA--A--ATTAAATTCCCTTGCCAATTGATGGTAATTCCCA-----------CTTCTT--TC---------------------------------------------------------------ATTTC-GTTTT--CACAG--------------------------------------CCCCTG------------------------------------TA---GCTGCCGTCCA------------------------------------------------------------------------GATACCCGCG---GCCGGA-GGAG---CCGGCCAAATCTCTTTG
droAna3	scaffold_13340:19594937-19595134 +		AGAA---------GATGGTCC-GGGGGTCG--------------------GGA----AGT-----------GGA-----------------------G------CAC---TTATCGGAGGATCAC------------------CGCATACCTTAA---GATGACTAATTAAAA----GATATTAA---------------------------TTAGTTTTCA-----------ATTTT----------------------------------------CTCT-CT----------T--------------------------GC---------------------------------------CTTTTCAGCAACTACAGCTAGTGGAGCTGTCACAACTAATTCAACGCTTCCCGTCCA------------------------------------------------------------------------GGTTGCCAAT---CCTGGA-ACA------ACCAAAATATCCTTG
droBip1	scf7180000396413:2791019-2791214 -		AGAA---------GATGGTCA-GGGGAGGAGT-GAA-------------------------------------------------------------G------CAT---TTATTGGAGGATCGC------------------TGCATACCTTAA---GATGACTAATTACAA----AATATTTAA--------------------------CTAATCTTTA-----------A-----------------------------------AAAATTTT-AATT-TT----------T--------------------------AC---------------------------------------CTTTTTAGCAACTTCCGCTAGTGGCACTGCCACAAC---TTCAACGCTTCCCGTCCA------------------------------------------------------------------------GGTCGCCAAT---CCTGGA-GGA------ACCAAAATATCCCTA
dp5	2:9699245-9699518 +		GCAA---------GGCAGTCA-GGGCAGGGCA------------------GGC----AGC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGAAA-ACACA----CACAACATTCGATTCGCGATTCGTGGT--T-CGCGGTTCGCGAGGA--------TCTGGCCAGGCACAACATTTGTGTAATAAAAATTGT-AATT--------TGGCTT--------------------------AT---------------------------------------ATTTG------------------------------------CA---GCACCTGTACCTGCTTCTGTATCGGTATCGGCATCTGGATCTGGATCGGCCTCTGCAACTGCAGCTGTAGCTCTACCTGTACCTGCCCCTGTG---ACAGCT-CCGTCGCAGCAGCAAATCTCACTG
droPer2	scaffold_0:10781872-10782145 -		GCAA---------GGCAGTCA-GGGCAGGGCA------------------GGC----AGC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGAAA-ACACA----CACAACATTCGATTCGCGATTCGTGGT--T-CGCGGTTCGCGAGGA--------TCTGGCCAGGCACAACATTTGTGTAATAAAAATTGT-AATT--------TGGCTT--------------------------AT---------------------------------------ATTTG------------------------------------CA---GCACCTGTACCTGCTTCTGTATCGGTATCGGCATCTGGATCTGCATCGGCCTCTGCAACTGCAGCTGTAGCTCTACCTGTACCTGCCCCTGTG---ACAGCT-CCGTCGCAGCAGCAAATCTCACTG
droWil2	scf2_1100000004921:341116-341375 +		TTGA---------AATAAAAA---TGAAA-----------------------AATTTAATTTAAAAGTAATGAA--AAGATGAGATGA----GCCCA-GACTTAAGTAATAGTGTGAAAGATCAG-----A----------TGAAGCTACATACA---TATAAGTTTTA----------------------------------AGTTTTGGCAA--T-TGTGACTCATAAATA--------TAAT---------------------------------AACTTATATTATTATTTT--------------------------TCAGTTTCAGCGCCTGTTTC------------------------------------TGCTCTTGTGGGTGGTTCTTC---TTCTTCGGTTCCGGCCAA---------------------------------------------------------GGC------------AACATCCAATAC-ATTGGTGCCCA---GTGGACAAATATCGCTG
droGri2	scaffold_15074:1685084-1685089 +		AAAA---------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGAA---------GATTTT-G-GATCAGC-------AGTGCCAGAGCGAAGTCGATCGGTGCGGTGGGGGTGCG--GCGGTGCGGTGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTCT--ATCTT-----------------------------TCTG-CC------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTCTCCCTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................A-----A----------TCGGATTGCCTTCG---GGT.......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................CTGCTCTCC-ATTTGGATG.......................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGGTGATCGGGTTCC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

AGAA---------GATTTT-G-GATCAGC-------AGTGCCAGAGCGAAGTCGATCGGTGCGGTGGAGGTGCG--GCGGTGCGGTGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTTT--ATCTT-----------------------------TCTG-CT------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTCTCCCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................AGAGCGAAGTCGATCGGTGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
..................................................................................CGGTGATCGGGTTCG-GGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0
......................................................ATCGGTGCGGTGGAGGTGCG--GCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0

dm3

AGAA---------GATTTT-G-GATCAGC-------ACTGTCAGAGCGCAGTCGATCGGTGCGGTGAGGGTGCG--GCGGTGCGGGGATCGGGTTCG-GGTTCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAATTCAAA------------------------GCTAATTCGTG-----------TTTCTCTATCTT-----------------------------TCTT-TA------------------TTTCTGCTCTCC-ATTTGGATGCA---------------------------------------ACCGTA------------------------------------CAGCGACACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAGGTATCCCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................GAGGGTGCG--GCGGTGCGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	2	0	0	0	0	0	0	0	0
..................................................................AGGGTGCG--GCGGTGCGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	2	0	0	0	0	0	0	0	0
.................................................................GAGGGTGCG--GCGGTGCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................AGGGTGCG--GCGGTGCGGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0
..................................................................AGGGTGCG--GCGGTGCGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0
............................................................GCGGTGAGGGTGCG--GCGGTGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGGGGATCGGGTTCG-GGTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0
............................................................GCGGTGAGGGTGCG--GCGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGT-CCGG---GTGCGCAGGTAT.....	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................A------------------TTTCTGCTCTCC-ATTTGGATGC......................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................ATCGGTGCGGTGAGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCGGTGCGGGGATCGGGTTCG-GGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGGTGCG--GCGGTGCGGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAGGGTGCG--GCGGTGCGGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCGGTGCGGTGAGGGTGCG--GA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................AGAGCGCAGTCGATCGGTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GAGGGTGCG--GCGGTGCGGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................TCGGTGCGGTGAGGGTGCG--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAGC---ACGGGT-CCGG---GT...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GTGAGGGTGCG--GCGGTGCGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GCAGTCGATCGGTGCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............TTTT-G-GATCAGC-------ACTGTCAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................GAGGATCCA-----A----------TCGGATTGCCT................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................CGGGGATCGGGTTCG-GGTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GGTGCGGGGATCGGGTTCG-GGTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................GT---TCAATGGAGGATCCA-----A----------TCGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGGTGCG--GCGGTGCGGGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................ATCAGC-------ACTGTCAGAGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATCGGGTTCG-GGTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGAA---------GATTTT-G-GATCAGC-------AA-------------TCAATCGGAGCGCAGGGGGTGCG--GTGATGCGGGGATCGGGT-------TCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAG----AAAACTCAAA------------------------GCTAATTCGTG-----------TCTCTCT-------------------------------------G-TCTTCT------------------TGCTCTCC-ATTTGGATGCA---------------------------------------TCCGTG------------------------------------CAGCAGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCGCAAATCTCCCTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

AGAA---------GATTTT-G-GATCAAC-------AG-------------T----CAGCGCAGTAGGAGTGCGAGGTGGTGCGGGGATCGGGT-------TCGGGT---TCAATGGAGGATCCA-----A----------TCGGATTGCCTTCG---GGTGACTAATTAAAGA---AAAACTCAAT------------------------GCTAATTCGTG-----------TCTCTCT-------------------------------------G-TCTTCT------------------TGCTCTTC-ATTTGATTGCA---------------------------------------TCCGTG------------------------------------CAGCAGCACCTGTCCA------------------------------------------------------------------------GATTCCCAGC---ACGGGT-CCGG---GTGCTCAGATCTCCCTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCCAGC---ACGGGT-CCGG---GT...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCTAATTCGTG-----------TCTCTCT-------------------------------------G-TC...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................CCA-----A----------TCGGATTGCCTTCG---GGT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................TGCGGGGATCGGGT-------TCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGAT---------GATTTTTT-GATCGGCGT--GCG-------------------------------------------------------------GGGTTCGGGC---TCAGTGGAGGATCCA-----ATCGGT-----TCAGATTGCCTTCG---GGTGACTAATTAAAT----AAAAGTCATT------------------------GCTAATTTGTA-----------TCTCTCT-------------------------------------TTTCTTCT-----------ATCT-------TTTC-GT------TCA---------------------------------------TCCGTA------------------------------------CA---GCACCTGGCCA------------------------------------------------------------------------GATTCCCAGT---ACGGGT-CCA------ACGCAAGTCTCCTTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGAA---------GATTTTCG-GATAGGCGGG-----------------------------------------------------------------G------GGT---TCAGTGGAGGATCGCTTTGGATCGGCTCGTATTGGATCGCCTTCG---GGTGACTAATTAAAG----AAAAGTCATT------------------------GCTAATTTGGA-----------TCTCTCT-------------------------------------G-TGTTCT---------------------------------------------CTCGTTTTTTTATGCTTTTTTCTTCGGTTTTCCACTGA------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------GGTGCCCAGCTCGACGGGT-CCG------GCGCAAATCTCCCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAA---------GATTTTGG-GATCCCAGG--------------GG--------------------------------------------------G------AAT---TCAGGGG--GTTCAG-----A----------TCGCATCGTCTTTG---AATGACTAATTAAAG----AAAAGTCACTT-----------------------GCTAATTTGTA-----------TCTTTTT-------------------------------------TCTCT-CT----------CATCT--------TTCAAT-TT--CCCA----------------------------------------TCTTT------------------------------------CA---GCACCTGTGCC------------------------------------------------------------------------CATTTCCAGTGCGACGGCT-CCC------CCGCAAATCTCCTTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAA---------GATTTTTG-GAGCAGCGGGGGCG-------------------------------------------------------------AG-----GTT---TTGGTGGAGGATCA------G----------T--------------------ACTAATTAAAGG---AAAAGTCAATT-----------------------GCTAATTTT-G-----------T------ATCTT---------------------------------CTCTTCT-------------------A-TTTTC-ATTTG--CCCA---------------------------------------ACCTTG------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------AATTCCAAGC---ACGGGT-CCG------GCGCAAATCTCCTTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGAA---------GATTTTTG-GAGCAGCGGGGGCG-------------------------------------------------------------G------CGT---TAAGTGGAGGATC--------------------GGATCGCCTTCG---GGTGACTAATTAAAG----AAAAGTCAAAC-----------------------GCTAATTTT-G---------TATCTTTCT-------------------------------------G-TT------------------GT-------------------TCAC---------------------------------------CTTTG------------------------------------CA---GCACCTGTCCA------------------------------------------------------------------------GATTCCAAGT---ACGGGT-CCG------GCGCAAATCTCCTTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGAA---------GATTTTGTGGATCGGCGG--GCG-------------------------------------------------------------G------GGT---TCAGCGGAGGATA--------------------AGATTGCCTTTG---GCTGACTAATTAAAG----AAAAGTCAAAT-----------------------GCTAATTTTTA-----------CTTTTTT-------------------------------------G-TC-------------------------------GT------TTAC---------------------------------------CTATA------------------------------------TA---GCACCAGTCCA------------------------------------------------------------------------GATTCCAAGC---ACGGGT-CCA------GCGCAAATCTCCTTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAACCAAAAAAAGATCTTAG-GCGGAGGA--------------------G-------------------------GAGGTGGAGAGATCGATT-------TTTCAT---TTACTTGAGGATCACT---GACTGCCTTGCCCTCGCCCGCCTTCGCATGATGACTAATTAAAG----AAAACA--A--ATTAAATTCCCTTGCCAATTGATGGTAATTCCCA-----------CTTCTT--TC---------------------------------------------------------------ATTTC-GTTTT--CACAG--------------------------------------CCCCTG------------------------------------TA---GCTGCCGTCCA------------------------------------------------------------------------GATACCCGCG---GCCGGA-GGAG---CCGGCCAAATCTCTTTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAA---------GATGGTCC-GGGGGTCG--------------------GGA----AGT-----------GGA-----------------------G------CAC---TTATCGGAGGATCAC------------------CGCATACCTTAA---GATGACTAATTAAAA----GATATTAA---------------------------TTAGTTTTCA-----------ATTTT----------------------------------------CTCT-CT----------T--------------------------GC---------------------------------------CTTTTCAGCAACTACAGCTAGTGGAGCTGTCACAACTAATTCAACGCTTCCCGTCCA------------------------------------------------------------------------GGTTGCCAAT---CCTGGA-ACA------ACCAAAATATCCTTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

AGAA---------GATGGTCA-GGGGAGGAGT-GAA-------------------------------------------------------------G------CAT---TTATTGGAGGATCGC------------------TGCATACCTTAA---GATGACTAATTACAA----AATATTTAA--------------------------CTAATCTTTA-----------A-----------------------------------AAAATTTT-AATT-TT----------T--------------------------AC---------------------------------------CTTTTTAGCAACTTCCGCTAGTGGCACTGCCACAAC---TTCAACGCTTCCCGTCCA------------------------------------------------------------------------GGTCGCCAAT---CCTGGA-GGA------ACCAAAATATCCCTA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCAA---------GGCAGTCA-GGGCAGGGCA------------------GGC----AGC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGAAA-ACACA----CACAACATTCGATTCGCGATTCGTGGT--T-CGCGGTTCGCGAGGA--------TCTGGCCAGGCACAACATTTGTGTAATAAAAATTGT-AATT--------TGGCTT--------------------------AT---------------------------------------ATTTG------------------------------------CA---GCACCTGTACCTGCTTCTGTATCGGTATCGGCATCTGGATCTGGATCGGCCTCTGCAACTGCAGCTGTAGCTCTACCTGTACCTGCCCCTGTG---ACAGCT-CCGTCGCAGCAGCAAATCTCACTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................GC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGAA........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-CCGTCGCAGCAGCAAA........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................CA------------------GGC----AGC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGA.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCT-CCGTCGCAGCAGCA..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................A-ACACA----CACAACATTCGATTCGCG...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GCAA---------GGCAGTCA-GGGCAGGGCA------------------GGC----AGC----------------------------------------------------------------------------------------------G---GATGAGGAACGAGGGGAAA-ACACA----CACAACATTCGATTCGCGATTCGTGGT--T-CGCGGTTCGCGAGGA--------TCTGGCCAGGCACAACATTTGTGTAATAAAAATTGT-AATT--------TGGCTT--------------------------AT---------------------------------------ATTTG------------------------------------CA---GCACCTGTACCTGCTTCTGTATCGGTATCGGCATCTGGATCTGCATCGGCCTCTGCAACTGCAGCTGTAGCTCTACCTGTACCTGCCCCTGTG---ACAGCT-CCGTCGCAGCAGCAAATCTCACTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGTAGCTCTACCT.................................................	18	1	1.00	1	1	0	0	0	0	0

droWil2

TTGA---------AATAAAAA---TGAAA-----------------------AATTTAATTTAAAAGTAATGAA--AAGATGAGATGA----GCCCA-GACTTAAGTAATAGTGTGAAAGATCAG-----A----------TGAAGCTACATACA---TATAAGTTTTA----------------------------------AGTTTTGGCAA--T-TGTGACTCATAAATA--------TAAT---------------------------------AACTTATATTATTATTTT--------------------------TCAGTTTCAGCGCCTGTTTC------------------------------------TGCTCTTGTGGGTGGTTCTTC---TTCTTCGGTTCCGGCCAA---------------------------------------------------------GGC------------AACATCCAATAC-ATTGGTGCCCA---GTGGACAAATATCGCTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................GATGAGATGA----GCCCA-GAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTCTTCGGTTCCGGCCAA---------------------------------------------------------GGC------------AACA........................................	28	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTGGTTCTTC---TTCTTCGGTTCC..........................................................................................................................	26	1	1.00	1	0	0	0	1	0

droGri2

AAAA---------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_24093

3r:22537850-22537999 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.1	-12.0	-11.9