ID:

dsi_24070

 Coordinate:

2r:5624947-5625049 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.0 -5.8 -5.5 -5.5

Flybase annnotation

CDS [2r_5624892_5624946_+]; exon [2r_5624766_5624946_+]; CDS [2r_5625050_5625240_+]; exon [2r_5625050_5625240_+]; intron [2r_5624947_5625049_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------##################################################
TTACGTGTATTGCGGCACCGACCCCATCGGGGCCTCCGAAGACATACTAAGTGGGTCAAGGGGTCGCTTCGGGGCCAATGCTCACCCACACACACACACACACGCAAACCAGCTAAAGCTTTCTCCTTTGTTTTCTGTTTACTTTTTGAAAAGGTGTTTATGACGCGGGATCCGCGCCGGGAAACGGGCACTTCTCGCCCAGC
********************************************************************..............((.........(((...(((........(((....)))........)))....)))........))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................TTTGTTTTCTGTTTACTTTTTG....................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................TCGGGGCCAATGCTCACCCACAC................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................TCTGTTTACTTTTTGAAAAG.................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................TACTAATTTGGTCAGGGGG............................................................................................................................................ 19 3 16 0.19 3 3 0 0 0 0 0 0
....................................................GGGTCAAGGGGTCGCA....................................................................................................................................... 16 1 8 0.13 1 0 0 0 1 0 0 0
..................................................GGGGGTCAAGGGGTCGCA....................................................................................................................................... 18 2 10 0.10 1 1 0 0 0 0 0 0
.....................................................GGTCAAGGGGTCGCA....................................................................................................................................... 15 1 20 0.10 2 0 0 0 2 0 0 0
.............................................ACTAAGTGGGTCTACGAGT........................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0 0
...................................................................................................................................TTTCTGTTTACTTTGTG....................................................... 17 1 18 0.06 1 0 0 0 1 0 0 0
.............................................................................................................................................................TGATAACGCGGGATCAGC............................ 18 3 20 0.05 1 0 0 0 0 0 1 0
............................................................................................................................................TCTTTTGGAAATGGTGTTTAT.......................................... 21 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AATGCACATAACGCCGTGGCTGGGGTAGCCCCGGAGGCTTCTGTATGATTCACCCAGTTCCCCAGCGAAGCCCCGGTTACGAGTGGGTGTGTGTGTGTGTGTGCGTTTGGTCGATTTCGAAAGAGGAAACAAAAGACAAATGAAAAACTTTTCCACAAATACTGCGCCCTAGGCGCGGCCCTTTGCCCGTGAAGAGCGGGTCG
*******************************************************..............((.........(((...(((........(((....)))........)))....)))........))******************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body
.................GGCTGGGGCCGCCCCGG......................................................................................................................................................................... 17 2 2 2.00 4 4 0 0 0 0 0 0
................TGGCTGGGGCCGCCCCGGC........................................................................................................................................................................ 19 3 4 1.25 5 2 3 0 0 0 0 0
.................................GAGGCTTCTGTATGATTCACC..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................AGACAAAAGAAAAAGTTTTCCAG............................................... 23 3 2 1.00 2 0 2 0 0 0 0 0
.....................................................................................................TGCGTATGGTCGATTT...................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0
.................................GAAGCTTCTGTCAGATTCAC...................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0
...........................................................................................................................AGGAAACAAAGGACAAA............................................................... 17 1 6 0.17 1 0 0 0 0 1 0 0
..........................................................................................................................................................................AGGCGCGGCCCTTAG.................. 15 1 8 0.13 1 0 1 0 0 0 0 0
...............................................................................................................................AACAAAAGAAAAATGAAAAA........................................................ 20 1 8 0.13 1 0 0 0 0 0 1 0
........GAGCGCCCTGGCTGGGGT................................................................................................................................................................................. 18 3 16 0.06 1 0 0 0 0 1 0 0
............................................................................................................GGTCGAATTCGAACGAGCA............................................................................ 19 3 16 0.06 1 0 0 0 0 1 0 0
........AAACGCCTTGGCTGGG................................................................................................................................................................................... 16 2 19 0.05 1 0 0 1 0 0 0 0
.............CCGTTGCTGGGTTAGTCCC........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
..................................................................................GTGGGTGTGTGTGTGTGT....................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................................TACTGCGTGCTAGGCG............................ 16 2 20 0.05 1 1 0 0 0 0 0 0
.................GGCTGGGGCGGCCCCG.......................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/23/2015 at 07:55 PM