ID:

dsi_24029

 Coordinate:

2l:10932367-10932629 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-109.2 -109.1 -109.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GACAAAAAAACAGCGCCCCGCGAAAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTCAGCCGCTCCGCCACATCCGCCGGCTGCTCCGCCCGCGTTGATCCCGTCGCCAGCGCCTCCGCGCGTTGCAAGCGAGAAAAAGGCGGCGCGGGAGAGAGCCGAGAGTCATTCGTTTGTCTCACTCCTGCGAGTGGGAAATTTGTTGTTCCACCGTGAGTGGGTTGGCGGGCGGTGGGCAGGGGCGGTGCGTTTGTTTTGAATTTGCACGCGGTAACAACAAACTGACTCCGGATGCAAATCCGCATGCACTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
**************************************************((((((...(((((((((((.((.(((((.((((.(((((((((.((..((.(((...((((((......))))))...))).))..)).))))((((((((.(((.((((.........)))).))).)))))))).((((((.........)))))).....))))).)))).)))))))))).))))))))(((..(((...((.((((((..(((...((......))...)))..)))))))).))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
...................................................................................................................................GATAAAAGGCCGGCGCGGG..................................................................................................................................................................................................................... 19 3 12 2.00 24 0 23 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGGGCGGTGGGCAGGGGCGGACT..................................................................................................................... 23 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCGGGCGGTGGGCAGGGGCGGAAA..................................................................................................................... 24 3 1 2.00 2 0 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGGGTTGGCGGGCGGTGGGCAGGGGC.......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTGGGTTGGCGGGCGGTGGGCAGGGGCG......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................CTCGGCAATCAAGGTAGGTTTT................................................................................................................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GCCGGACAGGCGTTCAGCAGACTG..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGGTTGGCGGGCGGTGGGC................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................CATGAACTCGGCAATCAAGGTGGGG................................................................................................................................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................GGCGGTGGGCAGGGGCGGTGCG.................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................AGGTAGGATCACCCGCT.......................................................................................................................................................................................................................................................................................................... 17 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.................................................GGTAGGATCACCCGCT.......................................................................................................................................................................................................................................................................................................... 16 2 15 0.27 4 0 0 0 0 0 0 1 3 0 0
.............................................................................................................................................................................................................................................................TTGAGTTGGAACGCGGTAA........................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................CGTGAGCGAGTTGGCGG......................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 1 0 0 0
......AAAAGAACGTCCCGCGAAA.................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................CAGGTAGGATCACCCGCT.......................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
............................................ATCACGGTAGGGTCA................................................................................................................................................................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................AGAGGGAAATTTGTTATT.............................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGTTTTTTTGTCGCGGGGCGCTTTTTTCCGGTACTTGAGCCGTTAGTTCCATCCAAGTCGGCGAGGCGGTGTAGGCGGCCGACGAGGCGGGCGCAACTAGGGCAGCGGTCGCGGAGGCGCGCAACGTTCGCTCTTTTTCCGCCGCGCCCTCTCTCGGCTCTCAGTAAGCAAACAGAGTGAGGACGCTCACCCTTTAAACAACAAGGTGGCACTCACCCAACCGCCCGCCACCCGTCCCCGCCACGCAAACAAAACTTAAACGTGCGCCATTGTTGTTTGACTGAGGCCTACGTTTAGGCGTACGTGAACGTCCACCCCCTCTATAAGTGCCGGCGGCCTGTCCGCAAGTCGTCTGACCCGCT
**************************************************((((((...(((((((((((.((.(((((.((((.(((((((((.((..((.(((...((((((......))))))...))).))..)).))))((((((((.(((.((((.........)))).))).)))))))).((((((.........)))))).....))))).)))).)))))))))).))))))))(((..(((...((.((((((..(((...((......))...)))..)))))))).))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR902008
ovaries
 M025
embryo
..........................................................................GGCTGCCGGCGAGGCGGGCCC............................................................................................................................................................................................................................................................................ 21 3 5 10.20 51 32 15 1 0 0 0 3 0 0 0
......................................................CAAGTCGGCGCGGCG...................................................................................................................................................................................................................................................................................................... 15 1 2 1.50 3 0 0 3 0 0 0 0 0 0 0
.....................................................CCACGTCGGCGAGGCG...................................................................................................................................................................................................................................................................................................... 16 1 8 1.00 8 0 5 0 0 0 3 0 0 0 0
...............................................................................................................................................................................................................................................................................................ACTACGTTTAGACGTACGTAAACGT................................................... 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GCCCTCTCTCGGCTCTCA....................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AAAAAAAACTTACACGTGCGCAA............................................................................................. 23 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..............................................................CAAGGCGGTGTAGGCG............................................................................................................................................................................................................................................................................................. 16 1 12 0.42 5 0 1 4 0 0 0 0 0 0 0
......................................................................TTTAGGCGGCCGACAAGGCAG................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................GCCAGGCAAACAAAATTTA........................................................................................................ 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
........................................................AGTCGGAGAGCCGGTGTAGG............................................................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..........................................................................GGCGGCCGGCGAGGCGGGCCCG........................................................................................................................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...................................................................................CGAGGCGGCCACAACTAG...................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................AGGCAAAAAGAGTGAGGAC.................................................................................................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.....................................................CCACGTCGGCGAGGC....................................................................................................................................................................................................................................................................................................... 15 1 16 0.19 3 0 3 0 0 0 0 0 0 0 0
.......................................................AAGTTGGCGAGACGGTGGAG................................................................................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................CGGCTCTCAGTAAGA................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0
.......................................................ACGTCGGCGAGGCGGTAT.................................................................................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GCCCACTCTCGGCTC.......................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0
..............................................................................CCCGACGAGGTGGGCGC............................................................................................................................................................................................................................................................................ 17 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..............................................................................GCCGGCGAGGCGGGCCCGA.......................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
......................................................CACGTCGGCGAGGCGG..................................................................................................................................................................................................................................................................................................... 16 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0
.......................................................ACGTCGGCGAGGCGGTATTG................................................................................................................................................................................................................................................................................................ 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AGTGCCAGAGGCCGGTCCG.................. 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
....................................................CCCACGTCGGCGAGGCGGTA................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0
............................................................GGCGAGGCGGTGGAAGCG............................................................................................................................................................................................................................................................................................. 18 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0
..............................................................................GCCGGCGAGGCGGGCCC............................................................................................................................................................................................................................................................................ 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0
...........................................................CGGCGAGGCGGTATTGG............................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0
...........................................................TGGTGAAGCGGTGTAGGCGG............................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.......................................................................GTAGGCGGCCGCCGACGC.................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
......................................................CACGTCGGCGAGGCG...................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................AGAGGTCGCGGAGGC.................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TAAGGCCTACGTTCAG................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:10932317-10932679 + dsi_24029 GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCGCCACATCCGCCGGCTGCTCC-------------------------------------GCC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droSec2 scaffold_3:6674898-6675260 + GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCTGCCACATCCGCCGGCTGCTCC-------------------------------------GCC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
dm3 chr2L:11278081-11278443 + GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCACCACATCCGCCGGCAGCTCC-------------------------------------GAC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEre2 scaffold_4929:14166704-14167066 - GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GG--------CCGCTCCGCCACAGCCGCCGGCAGCGCC-------------------------------------GCC---------CGC-GACAATCCCGTCGCCAGCGCCCCCTC--CCATTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droYak3 2L:7674631-7674993 + dya_257 GACAAAAAAACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TG--------CCGCTCCGCCACATCCGCCGGCTGCGCC-------------------------------------GCC---------CGC-GGAAATCCCGTCGCCAGCGCCCCCGC--GCGTTCTA--A----------------------GC---GAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCG-----TACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEug1 scf7180000407253:709214-709575 + GACTAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AA--------GTGCTCAGCCACATCCGCCGGCGACCAC-------------------------------------TCC---------CAC-TAAAATCGTACAACCAGAGGCCCCA----CGTCGGA--G----------------------TC---CGA-AAAAG-GCGGCGCGGGAGAGAGTCAA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGTACG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGGA-----TGCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGA
droBia1 scf7180000302422:1807306-1807672 - GACAAA-AAGCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGTCACGTCCGCCGGCGACCAC-------------------------------------GCC---------CCC-G-AAATCCCGCCTCCAGCGCCCCCGC--GCGTCATA--A-----------------------CA--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGGTCG---------GTGGGCG-GG----------------GGTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------GCT--CCG-GATGCAA-----------------AT--CCGGGTCGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGA
droTak1 scf7180000415128:35184-35566 - GACAAA-AAGTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGCCACCTCCGCCGGCGACCAC-------------------------------------GCC---------CCCCGGGAATACCGCCTACTTCGCCCC-GCGCGCCTTGCA--A-----------------------C----AA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGGTCG---------GTGGGCG-TGCGGG--GCGGGGGGA-GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCGGGATGCAA-----------------AT--CCGCATC---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droEle1 scf7180000490644:211256-211674 - GACAAAAAAGCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAG--------CTGCTCCGGCCGGTCCGCCGTCGACCAC-------------------------------------GCC---------CCC-CGGCATACCGCCGCCTGCGCCCCTGG--GCGCTGCAGCA--------GCCA-----------CAA-CAA-AAAAA-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCGTTCGCTCGTTCGCTCGTTTGTTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGGACG---------GTGGGCG-GGTGG-------------TGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC------AAACAC----------------------------------AA--ACTG-AACC----GAACCGAACTCCCGTCT--CCG-GATGCAA-----------------AT--CCGGT-----TGCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droRho1 scf7180000779240:27547-27910 - GACAAAAAAGCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCAGCCCAGTCCGCCGGCGCCCAC-------------------------------------GCC---------CCC-CAGAATCCCGCCGCCTGCGTCCCCGA--GCGCCGCA--A-----------------------CA--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGGGCG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGGG-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGA
droFic1 scf7180000454100:23849-24218 + GACAAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-AC--------CTGCTCCGACTGCTCCGCCGGCTACCAC-------------------------------------GCC---------CCC-CGGACTACCGCCCGCACCGTCTTGGC--GCGCCGCA--A-----------------------CAACAAA-AAACG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGGGTT---------GTGGGCCGGG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AA--CCCCAT----TACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGA
droKik1 scf7180000302677:523993-524385 + GGCAAAAAAGCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CG--------GTCTCCCAACCGGTCCGCCGGCGACGGC------------AACA-CTTAT-----------TCCCGCCACCCTGGCAGCC-GG-----------------------------------------------AG--CTCGGTCCGCG--GGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGGGCG---------GTGAGCG-GG--------------------GATGCGTTTGTTTTGAATTTGCAC-GCGCGC-CGAG----AGC------------AACAACAATGCCAATAACAATAACAATAACAA--ACCA-----------------------ATT--CCA-CATCCGA-----------------AT--CCCTG-----TGCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGA
droAna3 scaffold_12916:4179913-4180298 - GGGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCTTCAAGG-G------------AACATCTTAT-----------TCC-GCC---------GCC-GGAACTCCAATAA----------CTC--GTACCGC-------------------------------AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGG--TGTCGGTAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGC-CGGG----AGC------------A------------ACAAC------------AACAACTG-----------------------TCTAACCG-ATTGCA-------------------T--CCGAATCACGGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
droBip1 scf7180000396737:599933-600318 + GGGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCAGCAAGG-T------------AACATCTTTT-----------TCC-GCC---------GCC-GAAACTCCAATTACCCGTA------------CCGC-------------------------------AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGG--TGTTGGCAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGC-CGGG----AGC------------A------------ACAAC------------AACAACTG-----------------------GCTAACCG-ATTGCA-------------------T--CCGAATCATGGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGA
dp5 4_group3:6702292-6702677 + AGCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGT-----------AGTCATGTC-GT------------------------------CTGCCCCCACGTG----------------------AAACTCCAAATCTAACGCCCT----------------GGGCGGCATTTG--ATTTGT--GCG--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACG-TAAAT----------------------------GCCAACAAC------------AACAGCTGCCGGCAGACGA---------------------GTTGCAA-----------------TTACCCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droPer2 scaffold_1:8150853-8151238 + AGCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGC-----------AGTCATGTC-GT------------------------------CTGCCCCCACGTG----------------------AAACTCCAAATCTAACGCCCT----------------GGGCGGCATTTG--ATTTGT--GCG--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACG-TAAAT----------------------------GCCAACAAC------------AACAGCTGCCGGCAGACGA---------------------GTTGCAA-----------------TTACCCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGA
droWil2 scf2_1100000004521:4484172-4484569 - dwi_1246 AACAAAAAAATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AG--------AGCTTCTTAGTAGT-----------------------------ATTTTCA-----------TCA-ATT---------GAC-TAAAATAT----TTTAACGCTTTTG-----------------CGGTATTCA--CTTTGT--GCGGGAAA-ATAAA-GTGGCGCGAGCGGGAGTCGA-------GC----------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACAG--CAATTTGTTGTTCCACGATG--ATAGAGG----------A---------GTGGGCG-GGTGGGTGGTTAAGGGAGAGAGGGCGCGTTTGTTTTGAATTTGCAAAACAGG-CGG-C----AGA--AAACAA---------------------C------------A------------------------------ACT--CTG-CAGGGAGATAAAAACGTATCCTTATTACTTATG--------------TT----------------TGTTCTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGA
droVir3 scaffold_12963:2237765-2238117 - dvi_10115 AAAAAA--AGTTAT--------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATGTTT-AATTC-----------AGTCGCAGCT---------------------------------------------------------------A-ATTGGTTGCGTCTCAAGCGGCTTTCT--AAATCACA---AAGCGGCATTTT--ATTTGT--TCG--GAA-AATTG-TCGGCTGTG---CGCCTC-------------TG--TCAG--------------------TTC-GTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTG--CTT-----------------------T---------ATGGGGC-GA-----------------GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGC-AAG-------CACGAACAA---------------------C------------A---GCTG-----------------------C-C--ACA-AATGCA------------TCTAA-AA--TTTTG-----TCCA-------------------------ATTGTCTGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGA
droMoj3 scaffold_6500:27450675-27451036 - AAAAAAA-AGTGAT--------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATATTT-AAAGCACACGCAGTTTTTAAAAATTAGTTTAAGTGCATTTT----------------------------------TTC---------AAC-TGAAATGTCTCT----TTTCCTACGT--GCGTTGCA--A-----------------------A----AT-TTTTG-GCGGCTGAG---CGTCCCTT-------G----C--TCAG--------------------TTC-ATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCATG-------------------------------------------------------------GGGCGCGTTTGTTTTGAATTTGCAACGCATGC-TAAGGCTAAACATAAACAA----------------------------------AA--ACTC---------GATTTGAATGC--------ACG-TATATAA-----------------AT--ATTTG-----TTGT-----------------------------TTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGA
droGri2 scaffold_15126:1320844-1321234 - AAAAAA-AAGTAATTC--------AGCTTA--AGTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAGC-----------AA-------------AACGCATTTAACCGATTGCAACC-CGTA------------CGC-GCC---------GCC-GGATGGCAAAG----AATGC-----------------------CCCAATTGAGTTTTGT--GCG--GGAAAAGTGTGCGGCTGTG---TGCGTCTC--------TGT------CA-------------------TATC-GCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGGGCG---------GTGAG-----------------------AGGGCGCGTTTGTTTTGAATTTGCACCGCATGC-CAAA------------CAACAGCA------------ACAAC------------AACAACTCAAAACAAAACAG-----------CTGAAAAT-ATAACA------------CACAA-AT--TAT-------TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCGCCACATCCGCCGGCTGCTCC-------------------------------------GCC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................CGGGCG---------GTGGGCA-GG-----------------GGCGGACT..........................................................................................................................................................................................................................................................2312.00200000020000000000
........................................................................................................................................................................................................................................................................................................................................................................GCGGGCG---------GTGGGCA-GG-----------------GGCGGAAA..........................................................................................................................................................................................................................................................2412.00200000001000010000
..............................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGC...............................................................................................................................................................................................................................................................2711.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................GTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCG..............................................................................................................................................................................................................................................................2811.00100000000000001000
.............................................CTCGGCAATCAAGGTAGGTTT-T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGACAGGCGTTCAGCAGACTG.....2411.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................TGGGT--TGGCGGGCG---------GTGGGC.......................................................................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTGCG.........................................................................................................................................................................................................................................................2211.00100000000000010000
droSec2
GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCTGCCACATCCGCCGGCTGCTCC-------------------------------------GCC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGCCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGCG--AGTGGGT--TGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................CCCGCGAA--AAAAGGCCATGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
dm3
GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-AG--------CCGCTCCACCACATCCGCCGGCAGCTCC-------------------------------------GAC---------CGC-GTTGATCCCGTCGCCAGCGCCTCCGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCGTG--AGTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................GCGGGCG---------GTGGGCA-GG-----------------GGC...............................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000
........................................ATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000100000000000000000
......................................CCATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAAAGGCCATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GCG---------GTGGGCA-GG-----------------GGCGGTGCG.........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000
.............CGC------CCCGCGAA--AAAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AG-GCGGCGCGGGAGAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGGGCG---------GTGGGCA-G....................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTGCAC-GCGG--T-..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GTAGGTTC-AG--------CCGCTCCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AACTCGGCAATCAAGGTAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................CGC--GCGTTGCA--A----------------------GCG--AGA-AAAAG-GCGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GTTGTTCCACCGTG--AGTGGGC--CG.............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ACTCGGCAATCAAGGTAGGTTC-AG--------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCGGCGCGGGAGAGAGTCGA-------................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGCCGCCGGACAGGCGTTCAGC...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--AC....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................GTGGGC--CGGCGGGCG---------GTGGGCA-GG-----------------..................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGA.......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................CCAGCGCCTCCGC--GCGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AAAGGCCATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGACAGGCGTTCAGCAGACT......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................A--TTCG--------------------TTT-GTCTCACTCCTG................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................A--TTCG--------------------TTT-GTCTCACTCCTGCGAG............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CGGGCG---------GTGGGCA-GG-----------------GGCG..............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------CTTGCAGGTGGGGGAGA........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGC.......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................TGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACAGGCGTTCAGCAGACT......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................CCAGCGCCTCCGC--GCGTTGCA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGC.............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGA........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATCAAGGTAGGTTC-AG--------CCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTGCA.........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................CGCGAA--AAAAGGCCATGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CATGAACTCGGCAATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGTTC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GCA-GG-----------------GGCGGTGCGTTTGTT...................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGG...1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGGGC--CGGCGGGCG---------GTGGGCA-.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AAGGCCATGAACTCGGCAATCAAGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCACGGCCGCCGGACA.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GGCG---------GTGGGCA-GG-----------------GGCGGTG...........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................GTAGGTTC-AG--------CCGCTCCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ATGAACTCGGCAATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATATTCACGGCCGCCGGACAGG...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GCAATCAAGGTAGGTTC-AG--------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGTTCAGCAGACTGGGC..2011.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGAGATATTCACGGCCGCC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGGACAGGCGTTCAGCAGACTGGG...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GCG---------GTGGGCA-GG-----------------GGCGGTG...........................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................CGAA--AAAAGGCCATGAACTCGGCAATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACAGCGC------CCCGCGAA--AAAAGGCCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGGCCGCCGGACAGGCGTTCAGCAGA........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCTCCACCACATCCGCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACAAAAAAACAGCGC------CCCGCGAA--AAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-GG--------CCGCTCCGCCACAGCCGCCGGCAGCGCC-------------------------------------GCC---------CGC-GACAATCCCGTCGCCAGCGCCCCCTC--CCATTGCA--A----------------------GCG--AGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGTG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCA-----TGCA-------------------------------CTTGCAGGTGGGGGAGATTTTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGATTTTCACGGCCGCCG.........................2312.0022000000
droYak3
GACAAAAAAACAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAATCAAGGTAGGTTC-TG--------CCGCTCCGCCACATCCGCCGGCTGCGCC-------------------------------------GCC---------CGC-GGAAATCCCGTCGCCAGCGCCCCCGC--GCGTTCTA--A----------------------GC---GAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTG--AGTGGGG--CGACGGGCG---------GTGGGCG-GG-----------------GGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGCG-----TACA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................TCGCCAGCGCCCCCGC--GCGTTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
........................................ATGAACTCGGCAATCAAGGTAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAA-----------------AT--CCGCG-----TACG-------------------------------TG.......................................................18200.15303000000000
droEug1
GACTAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AA--------GTGCTCAGCCACATCCGCCGGCGACCAC-------------------------------------TCC---------CAC-TAAAATCGTACAACCAGAGGCCCCA----CGTCGGA--G----------------------TC---CGA-AAAAG-GCGGCGCGGGAGAGAGTCAA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCATGTTC--TCTGTGT--TGACGTACG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGGA-----TGCT-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCCGGACAGGCATTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
droBia1
GACAAA-AAGCAGCGC------CCCCCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGTCACGTCCGCCGGCGACCAC-------------------------------------GCC---------CCC-G-AAATCCCGCCTCCAGCGCCCCCGC--GCGTCATA--A-----------------------CA--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGG--GAGCGGTCG---------GTGGGCG-GG----------------GGTCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------GCT--CCG-GATGCAA-----------------AT--CCGGGTCGGATGCA-------------------------------CTTGCAGGTGGGGGAGATCTTTACGGCCGCCGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droTak1
GACAAA-AAGTAGCGC------CCCGCGAATAAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCCGCCACCTCCGCCGGCGACCAC-------------------------------------GCC---------CCCCGGGAATACCGCCTACTTCGCCCC-GCGCGCCTTGCA--A-----------------------C----AA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TCTGGGTGGCGGTGGTCG---------GTGGGCG-TGCGGG--GCGGGGGGA-GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCGGGATGCAA-----------------AT--CCGCATC---TGCAT------------------------------CTTGTAGGTAGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
GACAAAAAAGCAGAGC------CGCGCAAA-TAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGCCAG--------CTGCTCCGGCCGGTCCGCCGTCGACCAC-------------------------------------GCC---------CCC-CGGCATACCGCCGCCTGCGCCCCTGG--GCGCTGCAGCA--------GCCA-----------CAA-CAA-AAAAA-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCGTTCGCTCGTTCGCTCGTTTGTTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--CGGCGGACG---------GTGGGCG-GGTGG-------------TGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC------AAACAC----------------------------------AA--ACTG-AACC----GAACCGAACTCCCGTCT--CCG-GATGCAA-----------------AT--CCGGT-----TGCA-------------------------------CTTGCAGGTGGGCGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droRho1
GACAAAAAAGCAGAGC------CTCGCAAA-AAAAAGGCCATGAATTCGGCAACCAAGGTAGGTGC-AG--------GTGCTCAGCCCAGTCCGCCGGCGCCCAC-------------------------------------GCC---------CCC-CAGAATCCCGCCGCCTGCGTCCCCGA--GCGCCGCA--A-----------------------CA--AAA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTC--TTGTGGG--TGGCGGGCG---------GTGGGCG-GG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AT--CCGGG-----TGCA-------------------------------CTTGCAGGTGGGGGAGATATTCACGGCCGCGGGACAGGCGTTTAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
GACAAAAAAGCAGCGC------CCCGCGAA-AAAAAGGCCATGAACTCGGCAACCAAGGTAGGTGG-AC--------CTGCTCCGACTGCTCCGCCGGCTACCAC-------------------------------------GCC---------CCC-CGGACTACCGCCCGCACCGTCTTGGC--GCGCCGCA--A-----------------------CAACAAA-AAACG-GCGGCGCGGGAGAGAGTCGA-------GAGTCG--TTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCTTTTGCGGGGGG--CGACGGGTT---------GTGGGCCGGG----------------GGGCGGTGCGTTTGTTTTGAATTTGCAC-GCGG--T-AACAAC----------------------------------------------AA--ACTG-----------------------ACT--CCG-GATGCAA-----------------AA--CCCCAT----TACA-------------------------------TTTGCAGGTGGGGGAGATATTCACGGCCGCCGGGCAGGCGTTCAGCCGATTGGGCGASizeHit CountTotal NormTotal
No Reads
droKik1
GGCAAAAAAGCACCGCAAACGACCCGC-------AACGCCATGAACTCGGCAACAAAGGTAGGTTC-CG--------GTCTCCCAACCGGTCCGCCGGCGACGGC------------AACA-CTTAT-----------TCCCGCCACCCTGGCAGCC-GG-----------------------------------------------AG--CTCGGTCCGCG--GGA-AAAAG-GCGGCGCGGGAGAGAGTCGA-------GAGTCA--TTCG--------------------TTTCGTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCAACGTC--GTCGGGG--TGGCGGGCG---------GTGAGCG-GG--------------------GATGCGTTTGTTTTGAATTTGCAC-GCGCGC-CGAG----AGC------------AACAACAATGCCAATAACAATAACAATAACAA--ACCA-----------------------ATT--CCA-CATCCGA-----------------AT--CCCTG-----TGCA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTTGGCGASizeHit CountTotal NormTotal
No Reads
droAna3
GGGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCTTCAAGG-G------------AACATCTTAT-----------TCC-GCC---------GCC-GGAACTCCAATAA----------CTC--GTACCGC-------------------------------AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG-----GAGGGT--T-AAGG--TGTCGGTAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGC-CGGG----AGC------------A------------ACAAC------------AACAACTG-----------------------TCTAACCG-ATTGCA-------------------T--CCGAATCACGGAAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------AACAACTG-----------------------TCTAACCG-ATT...............................................................................................................................2012.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCACGGCCGCCGGACAGGCGT................2311.001010000
droBip1
GGGCAAAAAATAGCGCAAACGCCTCGC-------AACGCCATGAACTCGGCTACAAAGGTAGGTAC-AG--------GTGCTCCGCCCGGCCCGCCAGCAAGG-T------------AACATCTTTT-----------TCC-GCC---------GCC-GAAACTCCAATTACCCGTA------------CCGC-------------------------------AAA-AAAAG-GCGGCGCGGGAGAGAGTCGATAGTTGAGAGTCGTCTTCG--------------------TTT-GTCTCACTCCTGCGAGTGG----------GAAATTTGTTGTTCCACCG------GGGGG--TGAAGG--TGTTGGCAGA---GGCG-GC----------------GGGGGTTGCGTTTGTTTTGAATTTGCAC-GCGGGC-CGGG----AGC------------A------------ACAAC------------AACAACTG-----------------------GCTAACCG-ATTGCA-------------------T--CCGAATCATGGGAA-------------------------------CTTGCAGGTTGGGGAGATATTCACGGCCGCCGGACAGGCGTTCAGCAGACTGGGCGASizeHit CountTotal NormTotal
No Reads
dp5
AGCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGT-----------AGTCATGTC-GT------------------------------CTGCCCCCACGTG----------------------AAACTCCAAATCTAACGCCCT----------------GGGCGGCATTTG--ATTTGT--GCG--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACG-TAAAT----------------------------GCCAACAAC------------AACAGCTGCCGGCAGACGA---------------------GTTGCAA-----------------TTACCCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................CAACAAAGGTAGGTGC-AACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTCACGGCCGCCGGA.......................1911.0010100000000
droPer2
AGCAAAAAATTAGCTAATTCGACGC-------AATCAGCCATGAACTCGGCAACAAAGGTAGGTGC-AACGC-----------AGTCATGTC-GT------------------------------CTGCCCCCACGTG----------------------AAACTCCAAATCTAACGCCCT----------------GGGCGGCATTTG--ATTTGT--GCG--GGA-AAGTG-GCGGCACGG---TGCCTCAA-------GTGTCA--TTC-------------------------GTCTCCCTCCTTCGAGTGG----------GAAATTTGTTGTTCCATG-----ACAGG-------------------------GGCG-G-------------------AGGGCGCGTATGTTTTGAATTTGCAAAGCACG-TAAAT----------------------------GCCAACAAC------------AACAGCTGCCGGCAGACGA---------------------GTTGCAA-----------------TTACCCGCAGC---TGCACCATGTTGCACCAAGTGAAACGACATTTTTATCCGCAGGTTGGGGAGATTTTCACGGCCGCCGGACAAGCTTTCAGCAGATTGGGCGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AACAAAAAAATAGTTTAATTTATTT-------GATACGCCATGAACTCGGCTACCAAGGTACGTGC-AG--------AGCTTCTTAGTAGT-----------------------------ATTTTCA-----------TCA-ATT---------GAC-TAAAATAT----TTTAACGCTTTTG-----------------CGGTATTCA--CTTTGT--GCGGGAAA-ATAAA-GTGGCGCGAGCGGGAGTCGA-------GC----------------------------------CTCTCGCTCCTTCGAGTAAGAGCAACAG--CAATTTGTTGTTCCACGATG--ATAGAGG----------A---------GTGGGCG-GGTGGGTGGTTAAGGGAGAGAGGGCGCGTTTGTTTTGAATTTGCAAAACAGG-CGG-C----AGA--AAACAA---------------------C------------A------------------------------ACT--CTG-CAGGGAGATAAAAACGTATCCTTATTACTTATG--------------TT----------------TGTTCTTTTTCGCAGGTTGGGGAGATTTTCACGGCCGCTGGACAGGCATTCAGTAGATTGGGAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................GTGGGCG-GGTGGGTGGTT..........................................................................................................................................................................................................................................................................18314.3343038725
............................................................................................................................................................................................................................................................................................................................................................................................GCG-GGTGGGTGGTTAAGGGAGAG.................................................................................................................................................................................................................................................................2311.00100010
.....................ATTT-------GATACGCCATGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
........................................................................................................................................................................................................................................................................................................................................................................................GTGGGCG-GGTGGGTGGTA..........................................................................................................................................................................................................................................................................1870.29200101
droVir3
AAAAAA--AGTTAT--------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATGTTT-AATTC-----------AGTCGCAGCT---------------------------------------------------------------A-ATTGGTTGCGTCTCAAGCGGCTTTCT--AAATCACA---AAGCGGCATTTT--ATTTGT--TCG--GAA-AATTG-TCGGCTGTG---CGCCTC-------------TG--TCAG--------------------TTC-GTCTCACTCCTTCGGCAACGAATGTTAGCGAAATTTGTTTG--CTT-----------------------T---------ATGGGGC-GA-----------------GAAGGCGCGTTTGTTTTGAATTTGCAACGCATGC-AAG-------CACGAACAA---------------------C------------A---GCTG-----------------------C-C--ACA-AATGCA------------TCTAA-AA--TTTTG-----TCCA-------------------------ATTGTCTGCGCAGGTTGGGGAGATTTTCACGGCAGCGGGTCAAGCATTCAGCAGGCTCGGCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGGTCAAGCATTCA.............1911.001000000000000000000000000000000000000100000000000000000000000000
.............................A--AGTGGGCCATGAATTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................AATCACA---AAGCGGCATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000010000000000000000000
............................................................................................T---------------------------------------------------------------A-ATTGGTTGCGTCTCAAGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGATTTTCACGGC..............................1811.001000001000000000000000000000000000000000000000000000000000000000
droMoj3
AAAAAAA-AGTGAT--------TCTGCTTA--AGTGGGCCATGAATTCGGCAACAAAGGTATATTT-AAAGCACACGCAGTTTTTAAAAATTAGTTTAAGTGCATTTT----------------------------------TTC---------AAC-TGAAATGTCTCT----TTTCCTACGT--GCGTTGCA--A-----------------------A----AT-TTTTG-GCGGCTGAG---CGTCCCTT-------G----C--TCAG--------------------TTC-ATCTCACTCCTTCGAAAGCGAATGCCAGCGAAATGTTTTGCTTCATG-------------------------------------------------------------GGGCGCGTTTGTTTTGAATTTGCAACGCATGC-TAAGGCTAAACATAAACAA----------------------------------AA--ACTC---------GATTTGAATGC--------ACG-TATATAA-----------------AT--ATTTG-----TTGT-----------------------------TTTGCATAGGTTGGAGAAATTTTCACGGCAGCGGGCCAAGCGTTTAGCAGACTCGGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................C---------AAC-TGAAATGTCTCT----TTTCCTACGT--GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
droGri2
AAAAAA-AAGTAATTC--------AGCTTA--AGTAGGCCATGAATTCGGCAACAAAGGTATGTTA-AAAGC-----------AA-------------AACGCATTTAACCGATTGCAACC-CGTA------------CGC-GCC---------GCC-GGATGGCAAAG----AATGC-----------------------CCCAATTGAGTTTTGT--GCG--GGAAAAGTGTGCGGCTGTG---TGCGTCTC--------TGT------CA-------------------TATC-GCCTCACTCCTTCGGGTGCGAATGGTAGCGAAATTTTGTGTTTGTGCTTC--ATTTTG------GGGGCG---------GTGAG-----------------------AGGGCGCGTTTGTTTTGAATTTGCACCGCATGC-CAAA------------CAACAGCA------------ACAAC------------AACAACTCAAAACAAAACAG-----------CTGAAAAT-ATAACA------------CACAA-AT--TAT-------TATT-------------------------------CTTGCAGGTTGGTGAAATATTTACGGCAGCGGGTCAAGCGTTCAGCCGACTCGGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:12 AM