dsi_24012

CDS [x_17600282_17600542_+]; exon [x_17599928_17600542_+]; intron [x_17600543_17601957_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACAGTCGCATCCTCCGGGCGAGGAGGAACAGCCTGTACAATCACAGCAGGTAATGAGTAAGAAAAGGTGCAAGTGGAGTGGGTGGTGGGTGGACGTTGTGGTATATATGGAGGACGGGCTGATAAGGCAACCCACATAGGCGCATATAAACATACATTCGTACTTACATATGTACACTTTGTTGGCCATGTTTGCCCTCGTCAGCGCGAATAAATACTGCGTCATTAATGACATTAATGGGTGCTGGGT ****************************************************************************.......((.(((...((((...............)))).))).))****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
..............................................................................GTGGGTGGTGGGTGGACG..........................................................................................................................................................	18	0	1	4.00	4	2	2	0	0	0	0
.............................................................................AGTGGGTGGTGGGTGGACG..........................................................................................................................................................	19	0	1	2.00	2	1	1	0	0	0	0
.........................................................................GTGGAGTGGGTGGTGGGTGGACAA.........................................................................................................................................................	24	2	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................TCTCTCGGCCATGTTTGCCCTC..................................................	22	3	1	1.00	1	0	0	0	0	0	1
..........................GAACAGCCTGTACAATCACA............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0
.........................................................................GTGGAGTGGGTGGTGGGTGGACG..........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0
....GTCGCATCCTCCGGGCG.....................................................................................................................................................................................................................................	17	0	1	1.00	1	0	0	1	0	0	0
.......................................................................................................ATATATGGAGGACGGGCTGAT..............................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0
......................................................TGAGTAAGAAAAGGT.....................................................................................................................................................................................	15	0	2	0.50	1	0	1	0	0	0	0
..............................................................................GTGGGTGGTGGGTGGAC...........................................................................................................................................................	17	0	3	0.33	1	0	1	0	0	0	0
..............................................................................GTGGGTGGTGGGTGGA............................................................................................................................................................	16	0	16	0.13	2	0	2	0	0	0	0
............................................................................GAGTGGGGGCTGGGCGGACG..........................................................................................................................................................	20	3	12	0.08	1	1	0	0	0	0	0
....................................................................TGCAAGAGGCGTCGGTGGTG..................................................................................................................................................................	20	3	18	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................GCGCGAATAAAGACTT..............................	16	2	20	0.05	1	0	1	0	0	0	0

GTGTCAGCGTAGGAGGCCCGCTCCTCCTTGTCGGACATGTTAGTGTCGTCCATTACTCATTCTTTTCCACGTTCACCTCACCCACCACCCACCTGCAACACCATATATACCTCCTGCCCGACTATTCCGTTGGGTGTATCCGCGTATATTTGTATGTAAGCATGAATGTATACATGTGAAACAACCGGTACAAACGGGAGCAGTCGCGCTTATTTATGACGCAGTAATTACTGTAATTACCCACGACCCA ****************************************************************************************************************************.......((.(((...((((...............)))).))).))****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O002 Head	SRR618934 dsim w501 ovaries
..............................................................................................................................................................................................CAAACGGGAGCAGTCGCG..........................................	18	0	1	1.00	1	0	1	0
....................................................................................................................................................................................................GGAGCAGTCGCGCTTATTTAT.................................	21	0	1	1.00	1	1	0	0
..............GGCCCGATCCTCCTTGTA..........................................................................................................................................................................................................................	18	2	2	0.50	1	0	0	1
..........................TTTGTCGGACATGTTCGT..............................................................................................................................................................................................................	18	2	8	0.13	1	0	0	1
...........................................................................................................................ATTCCGTTGCGTGTACC..............................................................................................................	17	2	17	0.06	1	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:17600493-17600742 +	dsi_24012	CA-CAGTCGCA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGGTG--------------CAAGTGGAG-------TGGGTGGTGGGTGGAC--------GTTG--T-GG----------TATATATGGAGGACGGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGGCGCAT----ATAAACATACATTC----------------GTACT--TACATA------TGTA----CACT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT
droSec2	scaffold_8:981948-982197 +	dse_1560	CA-CAGTCGCA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGTTG--------------CAAGTGGAG-------TGGGCGGTGGGTGGAC--------GTTG--T-GG----------TATATATGGAGGACGGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATATGCGCAT----ATAAACATACATTC----------------GTACT--TACATA------TGTA----GACT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT
dm3	chrX:18683073-18683325 +		CA-CAGTCGCA-----------TCCTCCGG---------------GCGACGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGTCG--------------CAAGTG------------GGTGGTGGGTGGAC--------GTTG--T-AG----------TATATGTGTAGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CATATATGCGCGT----ATAAACATACATTCGTACTTAT--------GCACA--TATGTA------TGTA----CACT-TTGTTGGCCATGTTTT-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT
droEre2	scaffold_4690:8978756-8979000 +	der_406	CC-CAGTCCAA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TAGGTAATGAGTAAGAAG----AGTCG--------------CAAGTGGAG-------TGGGTGGTGGGTGGGC--------GTTG--T-GG----------TATAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGGCACAT----GTGTACATATATAT----------------GTACA--TACG--TAAATATGTA----GAAT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAGTACTGCGTCATT---------AATGGGT------GTT-GGGT
droYak3	X:17300070-17300304 +		CC-CAATCCAA-----------TCCTCCGG---------------GCGTGGAGGAACA------GCCTGTACAATCACAACAGG------TA----ATGAGTAGGAGG----AGTCG--------------CAAGTGGAG-------TGGGTGCTGGGTGGGTGGGTGTCTGTTG--T-GG----------TATAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATGT------------ATACGTACATAC----------------ATA----TGCATA------TATA----CAAT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATT---------AATGGGT------GTC-GGGT
droEug1	scf7180000409458:140013-140260 -		CA-CAATCGAA-----------TCCTCCAG---------------GCGAGGTGGAACA------GCCCGTACAATCACAGCAGG------TA----ATGACTAAGAAG----AGGTG--------------AAGGTGGAG-------TGGGTGGTTGTT------------------T-GC----------TATAT----AGGACAGGCTGATAAGGCGAC-----------------------------------------------------------------------------------------T--CATATATTTCTAT----AT--ACATATGTAT----ATATGTACACACATATACATACC--TACATATATCGAGA--GA-GTGTTAGCCATGTTTT-TCCTC---GTCAGCGCGAAATAAATACTGCGTCATT---------AATGAGT------GTT-AGGT
droBia1	scf7180000302432:508213-508425 -		CA---GCCAGA-----------TCCTCCAG---------------GCGAGGAGGAGCC------GCGCGCACCATCGCAGCAGG------TA----ATGAGCAAGAGG----CTT--------------------TGGAG-------TGGGTGG-----------------------T-GG----------TAAAT----AGGGCAGGCTGATAAGGCAGC-----------------------------------------------------------------------------------------G--CACATAC------------CTACATATGTAG----------------ATGCG--TACG--TCCATATCTCGGG---CG-GTGTTGGCCATGTTTT-CCCTC---GTCAGCGCA-AATAAATACTGCGTCATT---------AATGGGC------GTT-GGGT
droTak1	scf7180000414217:57719-57937 +		G--CAATCCGA-----------TCCTCCAG---------------GCGAGGCGGAGC------------CACAATCACAGCAGG------TA----ATGAGTAATGAG----AGGTG--------G-----TGAGTGG-G-------TGGGTGGTGGGT--------------TGCTT-GG----------TAAAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGG----T----ATAAACATACAAAC----ATAT--------GTGCG--T----A------TGTA-------T-GTGTTGACCATGTTTT-CCCTC---GTCAGCGCA-AATAAATACTGCGTCATT---------AATGGGC------GTT-GGGT
droEle1	scf7180000491006:949018-949232 +		CAGCAATCGCA-----------GCC------------------------GGAGCAGCA------GGCACTACAAACGCAGCAGG------TAAAC--GGAGAAA---------------------------CGAGTGGAA-------AGGGTGGTGGGTGGGC--------GG------CG----------TAAAT----AGGACAGGCTGATAAGGCAGC------------------------------------------------------------------------------CACATCAGTTCACAT----------------------------------------------GTACA--TAT--------ATATCGAGGCAGTAGTGTTGGCCATGTTTT-CCCGCACTGTCAGCACA-AATAAATACTGCGTCATT------------GGGTGTTAGTGTT-GGAT
droRho1	scf7180000779985:1422289-1422489 +		AG-CAATCGCA-----------GCC---GG---------------ATCAGCAGCAGCA------GCCACTACCAACGCAGCAGG------TA----AGGAGTAACGAG----ACATG---------------GGGTGGAG-------TGGGTGG-------------------------CG----------TATAT----AGGACAGGCTGATAAGGCACC--------------------------------------------------------------------------------------------TACA--------------------TACATTA----------------GTACA--T----------ATATCGGGGCAATAGTGTTGGCCATGTTTTCCCCTT---GTCATCACG-AATAAATACTGCGTCATT------------GGGC------GTT-AAGT
droFic1	scf7180000453829:30943-31119 -		TC-CAATCCCT--------------TCCAG---------------CCGA---GGAGCC------ACCACTACAATCGCAGCAGG------TA----A-------AAACAGTTA-CGAG--------------AGGTGGAG-------TGGGTGG-----------------------T-AT----------TATAT----AGGACAGACTGATAAGGCAAA--------------------------------------------------------------------------------------------CAGATAT------------GTATGTTTGTAT----------------GTATA--TAC-----AATATATCGACG--TA-GTGTTGACCA---------------------------TAAATACTGCGTCATT------------------------T-TCGT
droKik1	scf7180000302685:570903-571171 -		CC-CAGCAGTAGCGGATTCGCAACCAGCAGCAGCAGAGGCGCAGCAGCAGCAGTCGCA------CCAACAGCAACAGCAGCAGG------TAAG-AATGAGTTAGAGC----GAGAC--------A-----AAAGTA------------GC-----------C--------C-----C-GG----------AAAGT----AGGACAGACTGATAACGGAATTGTACGGAATGTTGGTTCTGTTGGCCATAACCCTCCAAAGCGATCCATTCCCATTGCCCCATTCC-CTTCG----------------------------------------------------------------------------------------CTC----CCAT-TAGATTGGCCCGTTTT-CCAAC---GCCCGTGCA-AATAAGTACTGCGTCATT------------G-------------GGTT
droAna3	scaffold_13340:7260881-7260978 +		CA-CAATCCGG-----------GCC-----------------------ACTTGCACCA------CTC---------------CG------TG----GTGGGTCAGAAC----GATCT--------------CAAGCTCGG-------CCT-----------------------------GGGAATGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGCG--TG-GGAGTGGG--------------------------------------------------------CGTGG------GCG-GTGG
droBip1	scf7180000396383:31213-31291 -		TA-TATATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGCATTCCTAGAATGTCAC-----------------------------------------------------------------------------------------A--CACACACACACAT----GCAAACACACATGC----------------AAACA--CACAGG------CATA----CA----------------------------------------------CT------------------------------------TT
dp5	4_group5:508325-508414 -		AA-CAGCAGCA-----------GCAGGAGA---------------AAGTGGAAGAACA------ACA---GCAACAGCAGGAGA---AAGT---------TGAAGAGC----AACTG--------AAACAGCAACAGGAG-------AAAGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG
droPer2	scaffold_78:11985-12093 +		CAGCACCAGCA-----------TCAGCAGC---------------GCCAGCAGCAGCA------GCAGCAGCAGCAGCAGCAGGAGAAGGG---------GCAGTGGC----AGCAG--------CAGCC-ACAGTGGAG-------GGGACCGGAGGCGGCC--------GTAA--T-AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004511:5835806-5835874 +		AA-CAGCCGCA-----------G------------------------GAACAGCAGCA------ACATCAGCAAGAACAGCAAA------------AAGACCAAGAGC----AATCG--------------AAAGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT
droVir3	scaffold_12963:8362290-8362382 +		TC-CATTTAAA-----------AACCTTGT---------------GCGAATCGGCGAT------GGCAACATCGTCAC-GCGTG------TA----A----------------GTAG--------------CGGGTG------------GATGGTGGTGTGG------------------------------------------TGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGT------GCTGTGGT
droMoj3	scaffold_6308:430953-431133 -		AG-CAGCAGCA-----------ACAGCAGC---------------AGGAGCAGCAGCA------GCAGCAGCAACAGCAGCAGC------AA----------------------CTGAAACTGCAA-----CTGTTGCTAACTGCAACCGGCGG-------------------------------------TCCAC----AATAA-------TAA--------------------------------------------------------------CTATAATAATCAACATGGCGGCTGCACGAGCACACACACACACGCACGCACACATAGACACACACTC----------------AT------TCACT------CACA------------------------------------------------------------------------------------------CA
droGri2	scaffold_15245:5086172-5086347 -		AG-CAGCAGCA-----------TTAAAATC---------------ACCAACAGCAGCAGCACCAGCAACCGCGATCGCAGCAGC------GA----ATCTTTACGAAA----ACACC--------------ACAGTGAGG-------TATGATGATCACAATC-GCTGA--------TTGTAATTATGTAGTAAATATGC-------------------AC-----------------------------------------------------------------------------------------A--TACATACGCACAT----ACATACATACATAC----------------ATACA--TACATA------CATA----CA--------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CA-CAGTCGCA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGGTG--------------CAAGTGGAG-------TGGGTGGTGGGTGGAC--------GTTG--T-GG----------TATATATGGAGGACGGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGGCGCAT----ATAAACATACATTC----------------GTACT--TACATA------TGTA----CACT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................G-------TGGGTGGTGGGTGGAC--------G...............................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0
..........................................................................................................................................AG-------TGGGTGGTGGGTGGAC--------G...............................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
......................................................................................................................................GTGGAG-------TGGGTGGTGGGTGGAC--------AA..............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................GAACA------GCCTGTACAATCACA............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTGGAG-------TGGGTGGTGGGTGGAC--------G...............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....GTCGCA-----------TCCTCCGG---------------GCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ATATATGGAGGACGGGCTGAT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................TGAGTAAGAAA----AGGT.......................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGAC--------................................................................................................................................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGA.........................................................................................................................................................................................................................................................................................................................	16	16	0.13	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0

droSec2

CA-CAGTCGCA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGTTG--------------CAAGTGGAG-------TGGGCGGTGGGTGGAC--------GTTG--T-GG----------TATATATGGAGGACGGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATATGCGCAT----ATAAACATACATTC----------------GTACT--TACATA------TGTA----GACT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGACATTAATGGGT------GCT-GGG.	24	1	1.00	1	0	0	0	1

dm3

CA-CAGTCGCA-----------TCCTCCGG---------------GCGACGAGGAACA------GCCTGTACAATCACAGCAGG------TA----ATGAGTAAGAAA----AGTCG--------------CAAGTG------------GGTGGTGGGTGGAC--------GTTG--T-AG----------TATATGTGTAGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CATATATGCGCGT----ATAAACATACATTCGTACTTAT--------GCACA--TATGTA------TGTA----CACT-TTGTTGGCCATGTTTT-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATTAATGACATTAATGGGT------GCT-GGGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................GTG------------GGTGGTGGGTGGAC--------G...............................................................................................................................................................................................................................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ATACATTCGTACTTAT--------GCACA--TA..........................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ATACATTCGTACTTAT--------GCACA--............................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGTG------------GGTGGTGGGTGGAC--------G...............................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGTG------------GGTGGTGGGTGGAC--------GTTA--..........................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTGCGTCATTAATGACA.......................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........CA-----------TCCTCCGG---------------GCGACGAGGAACA------G..........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TGAGTAAGAAA----AGTCG--------------CAAG....................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACATTAATGGGT------GCT-GGG.	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAGTG------------GGTGGTGGGTGGAC--------................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................GTG------------GGTGGTGGGTGGAC--------GC..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTG------------GGTGGTGGGTGGAC--------GT..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................GACGAGGAACA------GCCTGTACA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGACATTAATGGGT------GCT-GGG.	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
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.....................................................................................................................................................................................................TGTAGGACAGGCTGATAAGG..................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTG------------GGTGGTGGGTGGAC--------................................................................................................................................................................................................................................................................................................................	17	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGTG------------GGTGGTGGGTGGAC--------................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................AGTG------------GGTGGTGGGTGGAC--------GTT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CAGTCGCA-----------TCCTCCGG---------------GCGACGAGGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................AACA------GCCTGTACAATCACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TCG--------------CAAGTG------------GGTGGTGGGTGG..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................AAGTG------------GGTGGTGGGTGGA.........................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AAGTG------------GGTGGTGGGTGG..........................................................................................................................................................................................................................................................................................................................	17	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CC-CAGTCCAA-----------TCCTCCGG---------------GCGAGGAGGAACA------GCCTGTACAATCACAGCAGG------TAGGTAATGAGTAAGAAG----AGTCG--------------CAAGTGGAG-------TGGGTGGTGGGTGGGC--------GTTG--T-GG----------TATAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGGCACAT----GTGTACATATATAT----------------GTACA--TACG--TAAATATGTA----GAAT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAGTACTGCGTCATT---------AATGGGT------GTT-GGGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------GT..............................................................................................................................................................................................................................................................................................................	19	1	9.00	9	0	0	0	0	2	7	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------G...............................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	3	0
...................................................................................................................................................TGGGTGGTGGGTGGGC--------GT..............................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	1	0
.........................................................A------GCCTGTACAATCACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................GTCG--------------CAAGTGGAG-------TGGGTGGTGGGT............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................GTGGAG-------TGGGTGGTGGGTGGGC--------................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................GGTGGTGGGTGGGC--------GTTG--T-GG----------TA..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------T...............................................................................................................................................................................................................................................................................................................	18	12	0.42	5	0	0	0	0	0	5	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------GTTA--A-........................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	1	0	0
...................................................................................................................................................TGGGTGGTGGGTGGGC--------GTTA--A-........................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	1	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------A...............................................................................................................................................................................................................................................................................................................	18	12	0.17	2	0	0	0	0	2	0	0
...........................................................................................................................................G-------TGGGTGGTGGGTGGGC--------C...............................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	1	0

droYak3

CC-CAATCCAA-----------TCCTCCGG---------------GCGTGGAGGAACA------GCCTGTACAATCACAACAGG------TA----ATGAGTAGGAGG----AGTCG--------------CAAGTGGAG-------TGGGTGCTGGGTGGGTGGGTGTCTGTTG--T-GG----------TATAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATGT------------ATACGTACATAC----------------ATA----TGCATA------TATA----CAAT-TTGTTGGCCATGTTTG-CCCTC---GTCAGCGCG-AATAAATACTGCGTCATT---------AATGGGT------GTC-GGGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................TGGGTGCTGGGTGGGTGGGTG...................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................GG---------------GCGTGGAGGAACA------GCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................ACA------GCCTGTACAATCACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................AT----AGGACAGGCTGATAAGG..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....AATCCAA-----------TCCTCCGG---------------GCGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................GAACA------GCCTGTACAATCACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G-------TGGGTGCTGGGTGGGG........................................................................................................................................................................................................................................................................................................................	17	9	0.11	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

CA-CAATCGAA-----------TCCTCCAG---------------GCGAGGTGGAACA------GCCCGTACAATCACAGCAGG------TA----ATGACTAAGAAG----AGGTG--------------AAGGTGGAG-------TGGGTGGTTGTT------------------T-GC----------TATAT----AGGACAGGCTGATAAGGCGAC-----------------------------------------------------------------------------------------T--CATATATTTCTAT----AT--ACATATGTAT----ATATGTACACACATATACATACC--TACATATATCGAGA--GA-GTGTTAGCCATGTTTT-TCCTC---GTCAGCGCGAAATAAATACTGCGTCATT---------AATGAGT------GTT-AGGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CA---GCCAGA-----------TCCTCCAG---------------GCGAGGAGGAGCC------GCGCGCACCATCGCAGCAGG------TA----ATGAGCAAGAGG----CTT--------------------TGGAG-------TGGGTGG-----------------------T-GG----------TAAAT----AGGGCAGGCTGATAAGGCAGC-----------------------------------------------------------------------------------------G--CACATAC------------CTACATATGTAG----------------ATGCG--TACG--TCCATATCTCGGG---CG-GTGTTGGCCATGTTTT-CCCTC---GTCAGCGCA-AATAAATACTGCGTCATT---------AATGGGC------GTT-GGGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

G--CAATCCGA-----------TCCTCCAG---------------GCGAGGCGGAGC------------CACAATCACAGCAGG------TA----ATGAGTAATGAG----AGGTG--------G-----TGAGTGG-G-------TGGGTGGTGGGT--------------TGCTT-GG----------TAAAT----AGGACAGGCTGATAAGGCAAC-----------------------------------------------------------------------------------------C--CACATAGG----T----ATAAACATACAAAC----ATAT--------GTGCG--T----A------TGTA-------T-GTGTTGACCATGTTTT-CCCTC---GTCAGCGCA-AATAAATACTGCGTCATT---------AATGGGC------GTT-GGGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCAATCGCA-----------GCC------------------------GGAGCAGCA------GGCACTACAAACGCAGCAGG------TAAAC--GGAGAAA---------------------------CGAGTGGAA-------AGGGTGGTGGGTGGGC--------GG------CG----------TAAAT----AGGACAGGCTGATAAGGCAGC------------------------------------------------------------------------------CACATCAGTTCACAT----------------------------------------------GTACA--TAT--------ATATCGAGGCAGTAGTGTTGGCCATGTTTT-CCCGCACTGTCAGCACA-AATAAATACTGCGTCATT------------GGGTGTTAGTGTT-GGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AG-CAATCGCA-----------GCC---GG---------------ATCAGCAGCAGCA------GCCACTACCAACGCAGCAGG------TA----AGGAGTAACGAG----ACATG---------------GGGTGGAG-------TGGGTGG-------------------------CG----------TATAT----AGGACAGGCTGATAAGGCACC--------------------------------------------------------------------------------------------TACA--------------------TACATTA----------------GTACA--T----------ATATCGGGGCAATAGTGTTGGCCATGTTTTCCCCTT---GTCATCACG-AATAAATACTGCGTCATT------------GGGC------GTT-AAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TC-CAATCCCT--------------TCCAG---------------CCGA---GGAGCC------ACCACTACAATCGCAGCAGG------TA----A-------AAACAGTTA-CGAG--------------AGGTGGAG-------TGGGTGG-----------------------T-AT----------TATAT----AGGACAGACTGATAAGGCAAA--------------------------------------------------------------------------------------------CAGATAT------------GTATGTTTGTAT----------------GTATA--TAC-----AATATATCGACG--TA-GTGTTGACCA---------------------------TAAATACTGCGTCATT------------------------T-TCGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CC-CAGCAGTAGCGGATTCGCAACCAGCAGCAGCAGAGGCGCAGCAGCAGCAGTCGCA------CCAACAGCAACAGCAGCAGG------TAAG-AATGAGTTAGAGC----GAGAC--------A-----AAAGTA------------GC-----------C--------C-----C-GG----------AAAGT----AGGACAGACTGATAACGGAATTGTACGGAATGTTGGTTCTGTTGGCCATAACCCTCCAAAGCGATCCATTCCCATTGCCCCATTCC-CTTCG----------------------------------------------------------------------------------------CTC----CCAT-TAGATTGGCCCGTTTT-CCAAC---GCCCGTGCA-AATAAGTACTGCGTCATT------------G-------------GGTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CA-CAATCCGG-----------GCC-----------------------ACTTGCACCA------CTC---------------CG------TG----GTGGGTCAGAAC----GATCT--------------CAAGCTCGG-------CCT-----------------------------GGGAATGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGCG--TG-GGAGTGGG--------------------------------------------------------CGTGG------GCG-GTGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................G--TG-GGAGTGGG--------------------------------------------------------CGTGG------GC......	18	5	0.20	1	0	0	0	0	0	1

droBip1

TA-TATATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGCATTCCTAGAATGTCAC-----------------------------------------------------------------------------------------A--CACACACACACAT----GCAAACACACATGC----------------AAACA--CACAGG------CATA----CA----------------------------------------------CT------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AA-CAGCAGCA-----------GCAGGAGA---------------AAGTGGAAGAACA------ACA---GCAACAGCAGGAGA---AAGT---------TGAAGAGC----AACTG--------AAACAGCAACAGGAG-------AAAGTGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................TGGAAGAACA------ACA---GCAACAGCAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	3	0	0
................................................TGGAAGAACA------ACA---GCAACAGCAGGAGA---....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................GAAGAGC----AACTG--------AAACAGCAACAGG.................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

CAGCACCAGCA-----------TCAGCAGC---------------GCCAGCAGCAGCA------GCAGCAGCAGCAGCAGCAGGAGAAGGG---------GCAGTGGC----AGCAG--------CAGCC-ACAGTGGAG-------GGGACCGGAGGCGGCC--------GTAA--T-AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--T-........................................................................................................................................................................................................................................................................................................	22	3	1.67	5	0	5	0	0	0	0
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--T-A.......................................................................................................................................................................................................................................................................................................	23	3	1.67	5	0	5	0	0	0	0
..........................................................................CAGCAGCAGGAGAAGGG---------GCAG...................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0
................................................................................................................................CC-ACAGTGGAG-------GGGACCGGAGGT............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--T-AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	24	3	1.00	3	0	3	0	0	0	0
.................................................................................................................................C-ACAGTGGAG-------GGGACCGGA...............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................CAGTGGAG-------GGGACCGGAGG.............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--T-G.......................................................................................................................................................................................................................................................................................................	23	6	0.83	5	0	5	0	0	0	0
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--..........................................................................................................................................................................................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0
.....................................................................................GAAGGG---------GCAGTGGC----AGCAG--------..............................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0
.....................................................................................GAAGGG---------GCAGTGGC----AGCAG--------CAG...........................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
.......AGCA-----------TCAGCAGC---------------GCCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................GGGACCGGAGGCGGCC--------GTA.............................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................GGGACCGGAGGCGGCC--------GTAA--T-........................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
.....CCAGCA-----------TCAGCAGC---------------GCCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	1	0	0	0
...........................................................................................................................................G-------GGGACCGGAGGCGGCC--------GTAA--T-T.......................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
.....CCAGCA-----------TCAGCAGC---------------GCCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
..........................................................................CAGCAGCAGGAGAAGGG---------G......................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	1	0	0	0	0
......................TCAGCAGC---------------GCCAGCAGCAGCA------...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0
......................TCAGCAGC---------------GCCAGCAGCAGCA------G..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
.........CA-----------TCAGCAGC---------------GCCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0
........................................................................AGCAGCAGCAGGAGAAGG.................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	1	0	0	0	0
...........................AGC---------------GCCAGCAGCAGCA------GCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0
.........................................................................................GG---------GCAGTGGC----AGCAG--------CAGC..........................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0
........................................................................................GGG---------GCAGTGGC----AGCAG--------CA............................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0
......................................................................GCAGCAGCAGCAGGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droWil2

AA-CAGCCGCA-----------G------------------------GAACAGCAGCA------ACATCAGCAAGAACAGCAAA------------AAGACCAAGAGC----AATCG--------------AAAGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TC-CATTTAAA-----------AACCTTGT---------------GCGAATCGGCGAT------GGCAACATCGTCAC-GCGTG------TA----A----------------GTAG--------------CGGGTG------------GATGGTGGTGTGG------------------------------------------TGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGT------GCTGTGGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................AACCTTGT---------------GCGAATCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0

droMoj3

AG-CAGCAGCA-----------ACAGCAGC---------------AGGAGCAGCAGCA------GCAGCAGCAACAGCAGCAGC------AA----------------------CTGAAACTGCAA-----CTGTTGCTAACTGCAACCGGCGG-------------------------------------TCCAC----AATAA-------TAA--------------------------------------------------------------CTATAATAATCAACATGGCGGCTGCACGAGCACACACACACACGCACGCACACATAGACACACACTC----------------AT------TCACT------CACA------------------------------------------------------------------------------------------CA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................GCA------GCAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
..............................................GGAGCAGCAGCA------GCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0

droGri2

AG-CAGCAGCA-----------TTAAAATC---------------ACCAACAGCAGCAGCACCAGCAACCGCGATCGCAGCAGC------GA----ATCTTTACGAAA----ACACC--------------ACAGTGAGG-------TATGATGATCACAATC-GCTGA--------TTGTAATTATGTAGTAAATATGC-------------------AC-----------------------------------------------------------------------------------------A--TACATACGCACAT----ACATACATACATAC----------------ATACA--TACATA------CATA----CA--------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................TTAAAATC---------------ACCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1

dsi_24012

x:17600543-17600692 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.3	-2.7