ID:

dsi_24003

 Coordinate:

3l:8768981-8769130 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.0 -6.8 -6.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGACTTGTGGAGCCCCGACGGAAATCCCATGTCGGCTGTCAGCGGGGTCGTGGCATCTTACTGTCAATGTTATTAATGTATAGGTTTCGTAAATGTTGTCGCCATTTATGTAGTTAAACTAACAAGCCAAGCCCCACAACAAAAAACAAACACACACACACATCGCAACAACAGAATACAGTAACTTCTCTCTACCTAGGAAAATTTGGCCAAATTTGATCAACATTTTACGCTATTCTAAACCCCAAT
**********************************************************..........((((((((((..........((((((((.......))))))))..)))))..)))))..*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
..........................................................TTACTGTCAATGTTATTAATGTATA....................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGAAAATTTGGACAAACTTGGTCA........................... 24 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................TACCTAGGAAAATTTGGCCAAATT................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...ACTTGTGGAGCCCCG........................................................................................................................................................................................................................................ 15 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................TTTCGTAAATGTTGTCGCC.................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GGAAAATTTGGACAAACTTGGTC............................ 23 3 2 1.00 2 0 0 0 1 0 1 0 0 0 0
...............................................................................................................................................................................................................TGGCCAAATTTGATCAACA........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................TCGCCATTTATGTAGTTAAACTAACAAG........................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................CGGAAATCCCATGTCGGCTG................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............GCCCCGACGGAAATCCCATGTCGGCTG................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TACAGTAACTTCTCTCTACCTAGGA................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGTAGTTAAACTAACAAGCCAAGCCCC.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................TATTAATGTATAGGTTTCGTAAATGTT........................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................ACCTAGGAAAATTTGG........................................ 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................GCCAAATTTGATCAACA........................ 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................TACTGTCAATGTTATTAATGTATAGGT.................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGAGAATTTGGACAAATTTGGT............................. 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCAACATTTTACGCTATTCTAAACCCC... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......TGTGGAGCCCCGACGGAAATC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................GTCGCCATTTATGTAGTTAAACT................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.........................................AGCGGGCTCGTGGAATCT............................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATTTGGACAAACTTGGTCA........................... 20 3 15 0.47 7 0 0 1 4 0 1 0 0 0 1
.......................................................ATCTTACTGTCGAAGTTA................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................GGAGAATTTGGCCAAACTTG............................... 20 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................CGGGGTCGTGGCTTC................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
TGGACTTGTCGAGCC........................................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................AGATTTGATCAACATT...................... 16 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGAGAATTTGGGCAAACTTG............................... 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0
....................................................GGCATCTGACTGTCTA...................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACCTGAACACCTCGGGGCTGCCTTTAGGGTACAGCCGACAGTCGCCCCAGCACCGTAGAATGACAGTTACAATAATTACATATCCAAAGCATTTACAACAGCGGTAAATACATCAATTTGATTGTTCGGTTCGGGGTGTTGTTTTTTGTTTGTGTGTGTGTGTAGCGTTGTTGTCTTATGTCATTGAAGAGAGATGGATCCTTTTAAACCGGTTTAAACTAGTTGTAAAATGCGATAAGATTTGGGGTTA
***************************************************************************************************************************..........((((((((((..........((((((((.......))))))))..)))))..)))))..********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 M053
female body
.............................................................................................................................................................................TCTTATGTCATTGAAGAGAGA........................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................TCAATTTGATTGTTCGGTTC...................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........ACCGAGGGGCTGCCTTTA................................................................................................................................................................................................................................ 18 2 3 0.67 2 1 0 0 0 0 1 0 0 0
........ACCTCCGGGCTGCCCTTA................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TGTGTAGCGTTGTCGTGTTTTGT..................................................................... 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0
..............................................................ACAGTTAGATTAATTACAT......................................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................TAGCTTTGTGGTCTTATG...................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0
......................................................................................................................TGATTGTTTCGTTCGGGCTG................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0
......................................................GTAGAATGACTGTCATAAT................................................................................................................................................................................. 19 3 17 0.12 2 0 0 0 0 0 0 0 1 1
.......CACGTCCGGGCTGCCTT.................................................................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................TTTTGTTAGTGTGTGTGTGTA...................................................................................... 21 1 12 0.08 1 0 0 0 0 0 0 1 0 0
........ACCTCTGGGCTGGCCTTAG............................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0 0 0 0
........ACCTCGGGGCTGGCCTT................................................................................................................................................................................................................................. 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0
........ACCACGGGGATGCCCTTAG............................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 1 0 0 0 0 0 0
.........................................................................CATTACATATCCAAA.................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................TGTTGTTTTTTGTTT................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 12:07 PM