ID:

dsi_23990

 Coordinate:

3r:10293401-10293550 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.5 -8.5 -8.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATTCATTGTTTTCAACGCAGCAAGGGACAACAATTTGGCGCAATTGAAGGTAAGTTTTGAACATACCGTAAGCATTGCGAACTGGGATTCGGCAATTTCTCCTGCACACCTGGTCCGTCCAATTGGAAAGTTGCGAGATTCTTATTGTGATTGTTGTTAGAAATCTCAGCTGCTCAGTAAACTCGGCAGCTTATTTAGCCTTGTGACTAATCAATAAAATTCTCTCGCTCACACACACACTCGCGCACT
**********************************************************************************************....((((..(((...((..((((......)))).)).)))))))......................***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 M025
embryo
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
...............................................................................................................................................TATTGTGATTGTTGTTAG......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0
.......................AGGGACAACAATTTGGCGCAATTGAA......................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................ATTCTTATTGTGATTGTTGTT........................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................................................TGTTGTTAGAAATCTCAGCT.............................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................AATTTCTCCTGCACACCTGGTCC..................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................TGGTGTTAGAAATCTCAGCG.............................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................GTTTTCAGAAATCTCAGCGGC............................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................GGTGTCAGAAATCTCAGCGG............................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0
..............................................................................CTGACTGGGATTCGGCAGTTT....................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0
.......................................................................................................................................................................CAGCTGCTCAGCAAACACGGA.............................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................GCAGCTTATGTAGCCTT............................................... 17 1 7 0.14 1 0 0 0 0 0 0 1
......................................................................................................................................................................................................................ATAAAACTCTCTCGC..................... 15 1 17 0.12 2 0 0 0 0 0 0 2
.................................................................................................................................................TTTTGATTGTTGTCAGAAAGC.................................................................................... 21 3 12 0.08 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................GCAGCTTATGTAGCCT................................................ 16 1 12 0.08 1 0 0 0 0 0 0 1
.................................................................................................................................................TTTTGATTGTTGTCAGAAA...................................................................................... 19 2 14 0.07 1 0 0 1 0 0 0 0

Anti-sense strand reads

TTAAGTAACAAAAGTTGCGTCGTTCCCTGTTGTTAAACCGCGTTAACTTCCATTCAAAACTTGTATGGCATTCGTAACGCTTGACCCTAAGCCGTTAAAGAGGACGTGTGGACCAGGCAGGTTAACCTTTCAACGCTCTAAGAATAACACTAACAACAATCTTTAGAGTCGACGAGTCATTTGAGCCGTCGAATAAATCGGAACACTGATTAGTTATTTTAAGAGAGCGAGTGTGTGTGTGAGCGCGTGA
*****************************************************************************************....((((..(((...((..((((......)))).)).)))))))......................********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................AGGACGTGTGGACCAGGCAGGTT............................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
................................................................................................................CCAGGCAGGTTAACCTTTCAACG................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
..............................................................................................................GACCAGGCAGGTTAACCTT......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................GTATGGCATTCGTAACGC.......................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
...........................................................CTTGTATGCCATTGGGAACG........................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0
...............................................................................................................ACCACGCAGGTTATCCT.......................................................................................................................... 17 2 6 0.17 1 0 0 0 1 0
............................................................................ACGCTCGACCCTAAG............................................................................................................................................................... 15 1 9 0.11 1 0 0 1 0 0
.............................................................................................................................................................AGTCTTTAGAGTCGCCG............................................................................ 17 2 20 0.10 2 0 0 0 0 2
.....TAACAAGAGTCGCGTCGTTT................................................................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 1 0
................................................................................................................................................................................................................................GAGCGAGTGTGTGTGTG......... 17 0 19 0.05 1 0 0 1 0 0
.......................................................................TCGTCACGCTCGACCCT.................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 10:40 AM