ID:dsi_2398 |
Coordinate:3l:8204132-8204281 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -18.5 | -18.5 | -18.3 |
 |
 |
 |
five_prime_UTR [3l_8204282_8204340_-]; exon [3l_8204282_8204340_-]; five_prime_UTR [3l_8204266_8204340_-]; CDS [3l_8203627_8204265_-]; intron [3l_8203580_8204281_-]; exon [3l_8199770_8204340_-]
No Repeatable elements found
| ########################################################################################################################################################################################################################################################## CTCTAATAGAAACGCTATTAAACATATTGCATTGTTTTGCGTAAATAAAAGTAAGTTTCGCATGCAATGGCCTCGAAGCAGCAAATCAATTCACAGCTGAGCAAAAAGTTATCCTGGCTGTTGCGGCACGGTGCGAAAACGGAGGGAATCACCATCCGTGCGGATGGATTCGTTAGCGTCCCCGATTTGCAGAAGCACCCGCGCTACATGTGTTTTACCTTGGACAAACTGAAGGAGATTGCCGCCACGG *******************************************************************************************(((.(((..((((..(((((...))))).)))))))...)))((...(((((((......)).))))).))...************************************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
O002 Head |
SRR618934 dsim w501 ovaries |
M023 head |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................ATCACCATCCGTGCGGAT..................................................................................... | 18 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 |
| ................................................................................................................................CGGTGCGAAAACGGAGGGAATCACC................................................................................................. | 25 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................CACAGCTGAGCAAAAAGTT............................................................................................................................................ | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| .............................................................ATGCAATGGCCTCGAAGCAGCAA...................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..........AACGCTATTTAACACATTGCGT.......................................................................................................................................................................................................................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................GGCCTCGAAGCAGCAAATC................................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................AGTTATCCTGGCTGTTGC.............................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................GCGTATGGATTCGTTGGC......................................................................... | 18 | 2 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 |
| .................................................................................................................CTGTCTGGTGCGGCAAGGT...................................................................................................................... | 19 | 3 | 19 | 0.16 | 3 | 0 | 0 | 0 | 3 | 0 |
| ..................................................................................................................................................................................................GCACGCGCGCTACATCT....................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................TTTTACCTTGAACAAATTAA.................. | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................................................................................................TGCACGCGCGCTACAT......................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
|
GAGATTATCTTTGCGATAATTTGTATAACGTAACAAAACGCATTTATTTTCATTCAAAGCGTACGTTACCGGAGCTTCGTCGTTTAGTTAAGTGTCGACTCGTTTTTCAATAGGACCGACAACGCCGTGCCACGCTTTTGCCTCCCTTAGTGGTAGGCACGCCTACCTAAGCAATCGCAGGGGCTAAACGTCTTCGTGGGCGCGATGTACACAAAATGGAACCTGTTTGACTTCCTCTAACGGCGGTGCC
*************************************************************************************(((.(((..((((..(((((...))))).)))))))...)))((...(((((((......)).))))).))...******************************************************************************************* |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
O001 Testis |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................CCGGAGCTTCGTCGTTTA.................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................TTTGTGGGTGCGATGTACAC...................................... | 20 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| ..................................................................................................................................................................................................CGTGGGCGCGATGTACACAAA................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ........................................................................AGTGTCGTCGTTTAGTTCAGTGT........................................................................................................................................................... | 23 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................TCGTCGTTTAGTTCAGTGTTGT........................................................................................................................................................ | 22 | 3 | 5 | 0.40 | 2 | 2 | 0 | 0 | 0 | 0 |
| ..........................................................................TGTCGTCGTTTAGTTCAGTGT........................................................................................................................................................... | 21 | 3 | 10 | 0.10 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................AATGGAACCTGATTG..................... | 15 | 1 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................TGGGCGCGATGAACTTAAA................................... | 19 | 3 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:45 AM