ID:

dsi_23947

 Coordinate:

2r:5619665-5619816 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5619547_5619664_+]; exon [2r_5619337_5619664_+]; CDS [2r_5619817_5621264_+]; exon [2r_5619817_5621898_+]; intron [2r_5619665_5619816_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATGCTCCGCGACGAGGACAACAAGTACTGCGTGGACTGCGATGCCAAGGGTATGTAGATGGGGTCCACTTGTTCGCCGAGAGATACGCCTCTTGTTGACGCACATCTGTGTGCGTGCGTGCGTGCATATACACACCACATATGCATCTGCACTCCGATAAAAGCCTATGTGCTGTCACTAAATGCTACCTTTTATCCCTAGGTCCGCGCTGGGCCTCCTGGAACCTGGGCATGTTCCTCTGCATCCGCTGC
**************************************************...((((((((((.....))...(((.((((((......)))))).)))(((((....)))))((((.(((.(((........)))))).))))))))))))....((((((((.....((((...........)).)))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................TGGGCCTCCTGGAACCTGGGCATGT................. 25 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................CATCTGGACTTCGATAAAAA........................................................................................ 20 3 12 1.17 14 0 14 0 0 0 0 0 0 0 0
.............GAGGACAACAAGTAC................................................................................................................................................................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................AAGGGTATGTAGATGGGTT........................................................................................................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................AAGGGTATGTAGATGGGGTAT......................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....CTCCGCGACGAGGACAACAAGTACTG.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................GACAACAAGTACTGCGTGGACTGCGAT................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................CTGGAACCTGGGCATGTTC............... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................ACAACAAGTACTGCGTGGACTGC.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................AAGGGTATGTAGATGGGGTCC......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................AAGTACTGCGTGGACTGCGATGCCAAGG.......................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................TGCGTGGACTGCGATGCCAAGGGTC....................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AACCTGGGCATGTTCCTCTGCA........ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................GAACCTGGGCATGTTCCTCT........... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................CATCTGGACTTCGATAAAA......................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..............................................AAGGGTATGTAGATGGGTTT.......................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...........................CTGCTTGGACTGCGAT................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1
.......................................................................GTTCTCCGAGAGATA...................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0
............................TGCTTGGACTGCGAAGC............................................................................................................................................................................................................... 17 2 15 0.13 2 0 0 0 0 0 0 0 0 0 2
...........................CTGCTTGGACTGCGA.................................................................................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................GCCTCCGGGAACCTGCGGA.................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1
...................AACAAGTACTGCGAG.......................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0
...........................CTGCTTGGACTACGATG................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTACGAGGCGCTGCTCCTGTTGTTCATGACGCACCTGACGCTACGGTTCCCATACATCTACCCCAGGTGAACAAGCGGCTCTCTATGCGGAGAACAACTGCGTGTAGACACACGCACGCACGCACGTATATGTGTGGTGTATACGTAGACGTGAGGCTATTTTCGGATACACGACAGTGATTTACGATGGAAAATAGGGATCCAGGCGCGACCCGGAGGACCTTGGACCCGTACAAGGAGACGTAGGCGACG
**************************************************...((((((((((.....))...(((.((((((......)))))).)))(((((....)))))((((.(((.(((........)))))).))))))))))))....((((((((.....((((...........)).)))))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...........................GTCGTACCTGACGCTACG............................................................................................................................................................................................................... 18 2 10 7.80 78 68 1 1 6 0 2 0 0
....................................................................................................................................................................................TTTACGATGGAAAATAGGGAT................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................GACGTACCTGACGCTACG............................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................TACCCCAGGTGAACAAGCG............................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................CGTACCTGACGCTACG............................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................ATTTAGCCTAGGTGAACAAG................................................................................................................................................................................. 20 3 5 0.40 2 0 0 2 0 0 0 0 0
...CGAGGCGCTGCCCCT.......................................................................................................................................................................................................................................... 15 1 7 0.29 2 0 0 0 0 2 0 0 0
..............................GTACCTGACGCTACTGTT............................................................................................................................................................................................................ 18 2 6 0.17 1 0 1 0 0 0 0 0 0
...........................GTCGTACCTGACGCTAGGG.............................................................................................................................................................................................................. 19 3 20 0.15 3 0 0 0 3 0 0 0 0
..ACGAGGCGCTGGTCCTGA........................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 1 0 0 0
.......................................................................................................GTTGACGCAGGCACGCACGCA................................................................................................................................ 21 3 7 0.14 1 0 0 1 0 0 0 0 0
....GAGGCGGTGCTCCTG......................................................................................................................................................................................................................................... 15 1 16 0.13 2 0 0 0 0 0 0 0 2
...CGAGGCGCTGGTCCT.......................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................TCAATAGGGATCCAGG.............................................. 16 2 13 0.08 1 0 1 0 0 0 0 0 0
..CCGAGGCGCTGGTCCTG......................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................AGGGACCCAGGCGCGG......................................... 16 2 17 0.06 1 0 0 0 0 1 0 0 0
...............CCTGTTGTCCATGCCG............................................................................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 07:51 PM