dsi_23912

CDS [3l_21456564_21456968_+]; exon [3l_21456564_21456968_+]; intron [3l_21456038_21456563_+]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTCTTTATCAGTATTGATTGATTTGATACACCAAAAAAACCTGGCTTGGATTTAAATTCTTTTGACTTTTATTTAATGTAAATTAAATTTGAAATTATAAACAAATTGCCTCTTCTGACTTTAACCTTTGATTATTAGAAATAATAGCTTTGTCTGTTCATAATATATTCATATTGTTTATCCTTCAACTTTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT ************************************************.((.........((((........((((((.(((......(((....(((.(((((..((...((((((..((((...))))...))))))......))))))).))))))......))).))))))........)))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	GSM343915 embryo
.............................................................TTTGACTTTTATTTAATG...........................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............TTGATTGATTTGATA.............................................................................................................................................................................................................................	15	0	2	0.50	1	0	0	1	0	0	0	0	0	0
......................................................................................................................ACTTTAACTTTTGATTCCTAGA..............................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTTCAAACAAAAAGGAAG.................................	18	1	4	0.25	1	0	0	0	0	1	0	0	0	0
..............................................................TTGACGTTTATTTAATGGAAA.......................................................................................................................................................................	21	2	5	0.20	1	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................ACAGAGTTCTACAGA....	15	1	5	0.20	1	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................AAGTAGGTCTCCAGGCT...................	17	2	10	0.10	1	0	0	0	0	0	0	1	0	0
..............................................................TCGACGTTTATTTAATGGAAA.......................................................................................................................................................................	21	3	11	0.09	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................CATATGGTTTAGCCTTCGA.............................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................AGGCCACAGGGTTGTA........	16	2	20	0.05	1	0	0	0	1	0	0	0	0	0
.......................................................................................................AAATTGCCTCTTCGG....................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................AACAGAGTTCTACAGAA...	17	2	20	0.05	1	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................ACGAACAGATCAAGCAA.........................................	17	2	20	0.05	1	0	1	0	0	0	0	0	0	0
.........................GATACACCTAAAAAA..................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0	0	0	0

TAAGAAATAGTCATAACTAACTAAACTATGTGGTTTTTTTGGACCGAACCTAAATTTAAGAAAACTGAAAATAAATTACATTTAATTTAAACTTTAATATTTGTTTAACGGAGAAGACTGAAATTGGAAACTAATAATCTTTATTATCGAAACAGACAAGTATTATATAAGTATAACAAATAGGAAGTTGAAAGCTTGTCAAGTTCGTTTTTCCTTCATATAGAGGTCCGATGTCCCAAGATGTCTTACA ************************************************.((.........((((........((((((.(((......(((....(((.(((((..((...((((((..((((...))))...))))))......))))))).))))))......))).))))))........)))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
............................................CGAACCTAAATTTAAGAAA...........................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.............TAACGAACGAAACTATGCGG.........................................................................................................................................................................................................................	20	3	6	0.17	1	0	1	0	0
......................................................................................................................................................................................GGAAGGTGAAAGCTT.....................................................	15	1	17	0.06	1	0	0	0	1
.................................................................................................................................................................................AAATAGGCAGTTGAAAT........................................................	17	2	20	0.05	1	0	0	1	0
..GGACATAGTCATAAATAAC.....................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3l:21456364-21456613 +	dsi_23912	ATTCTTTATCAGTAT----------------------------------------------------------------TGATTGA--------T-------------------------------------T------------------------------------T---GA---------------------------------------------------------TA-CACCAAAAAAACCTGGCTTGGATTTAAATTCTTTTGACTTTTATTTAATGTAAATTAAATTTGAAATTATAAACAAATTGCCTCTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTAACCT------------------TTGATTATT-AGAAATA----------------------------ATAGCTTTGTC----TGTTC---------------ATA-----ATATATTCATATTGTTTATCCTT---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT
droSec2	scaffold_11:1866734-1866983 +		ATTCTTTATCATTAT----------------------------------------------------------------TGATTGA--------T-------------------------------------T------------------------------------T---GA---------------------------------------------------------TA-TACCAAAAAAACCTGTCTTGGATTTAAATTCTTTTGACTTTTATTTAATGTAAATTAAATTTGAAATTATAAACAAATTGCCTCTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTAACCT------------------TTGATTATT-AGAAATA----------------------------ATAGCTTTGTC----TGTTC---------------ATA-----ATATATTCATATTGTTTATCCTT---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT
dm3	chr3L:21939610-21939942 +		ATTCTTTATTAGTAT----------------------------------------------------------------C-----------------------------------------------------------A---GAGTCGATACATCCATGTCCGTCTCTT-CATATGTTTCAAAACTGTTTTAATTATTTCTAAAATTTTATTTTGTTCCCATTATTATTGATA-CACCGAAAACACCTGGCTTGGATTTAAATTCTTTCGACTTTTATATATTGTAAATGAAATTTAAGATTATAAATGAACTGCCTGTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTGTAACCT------------------TTGATTATT-AGAAATA----------------------------AGAGCTTTGTC----TGTTT---------------ATAATATTGTATATTTATATTGTTTATCCTC---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT
droEre2	scaffold_4784:21615043-21615294 +		TTTTCGATTTTA----------------------------------TTAT-----------------TTTTCTT----------------------------------------------------------CCAAACTACTA--------------------------C-GATATGCTAAAAAAAACT---------------------------------------TTGATAGCAACTCG--ACCCTTGCTTAGACTTAACATCT-----------------------TATATATACAAATATATACAAAT-----ATT--------T-----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTAGCCT------------------TTGTTTAAT-AGAAATA----------------------------AAAGCTTTGTC----TGTTA-------------TAAAG-----CTATATTCATCATACATAACATC---------------C--------------------------------------------------------------------------------------------------AACT--------------TCAAACAGCTCAAACAAACAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT
droYak3	v2_chrUn_002:348826-349005 +		TTTTTTAT-CAAAAC----------------------------------------------------------------AAAATGATGATAATAT-------------------------------------T------------------------------------T---AA---------------------------------------------------------AA-TATCACAAAAAA----------------------------------------------------ATATCG-----------------------------------------------------------------------------------------------------------------ATATATA-T--GATATTTCTGATATTTTTTTTCAAATAAAATTTTATTTCCCCTCAATAAAAATATAAAAGTT------------------TCT------------------------------------------------------------TATTAACTTAATTTTCA-TA-----TTTAATTT------CATA-------------------------------------TTTTC------------------------------------------------------------------AT--------------TTAAT-------CT-------------------------------------------------TAATATAT
droEug1	scf7180000407667:18921-19022 +		TTGAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAATTTAATTTAATATCCACTATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAAACT------------------TCCTTTACGCACAAAAA----------------------------ATAACTTCATT----------------------------------TTATTTAT------------------------------------------------------------------------------------------------------------------------------------GCTATTTTTTTTTC---------------------------------------------------------
droBia1	scf7180000301605:26881-27145 -		TTCTTTGC-AGGTAT--------TATATAAGTCGGAACCAGCCGGATTGGACATCTATATCTTATAGTTCACATAGGAACTAAC----------------------------------------------------------G--------------------------GCGA-AACAATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAA-T--TATATCTTCGGTGTTTTTTAAC-------A------------------------TATAACCT------------------CCTACGCTT-GGAAATA----------------------------ACATTTAA------------AAAATTTTTTTTTCG-TA-----TTAAATTT------------------------------------------------TA--TTAAAATTGGACGACTATATCATAAAGCTGCCATAGAAACAATTGGAAAAA--------------------------TAGT-------------------CGGGAAATGTAAAAAAAAAGTATATCTTTGG----------------------
droTak1	scf7180000415672:258919-259127 +		ATTGCAGGTAGT------------ATATATGTCGGAACCAACCGGATCGGACAACTATATCTTATAGCTCCCATAGGAAGGATC----------------------------------------------------------A--------------------------AAAA---------------------------------------------------------------------------------------------------------------------------AAAAAACGT-----------------------------------------------------------------------------------------------------------------AAAAAAA-T--TCTAGCTCCGGTGTTTTTTGAA-------A------------------------TTTTACCT------------------TTTACTCTT-GGGAATA----------------------------TATTTTTTATA----TATTT-----------------------CTGAATTTCGGTTTTTTG-------------------------------------TTTTT------------------------------------------------------------------A----------AAAC-------------AAAAAAAAATTAAAATTAA-----------------------------------AAAAA
droEle1	scf7180000490993:21712-21902 -		ATTGCATGTAGT------------AAATT---CGG--------------------------------------------------------------------------------------------------------------------------------------A-AAAATAAATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAA-T--TACAACTTTGCTGTTTTTTAAA------------------------------TTTTTTTTAG------------------T--------------------------------------------------------------------------------------------------------T---CTTTGGTTTAACAATTCGAATTATGGTTTAAATGTCA--TGAAAATCGGACGACTGTAACATAAAGCTACCATAGAAATAATA----AAATATTAAACAAATTTTTTTTAATGTTTAA-------------CTTT---------------------------------------------------------
droRho1	scf7180000780137:60701-60824 -		ATTGTAAAACAC---------------------------------------------------ATAGCTCCCAT----------------------------------------------------------T------------------------------------A---AA---------------------------------------------------------AA-TAAAAAAAAAAC-----------TTAAAAAATTTTTTTTTCTATTTATCAAAAATTTACTTTAAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAATT------------------ATT---------------------------------------------------------------------------------------------------TACTACAT----------------------------------------------------------CAGA-------------------------------------ACT----------------ACGCTT----TTAGTT---------------------------------------------------------
droFic1	scf7180000448500:1285-1363 +		CTCTTTTGATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT------------------TCAAATATT-AAATATA----------------------------ATACTTATATA----TATGT---------------ATA-----ATATATTTTTATTTTATT-------------------------------------------------------------------------------------------------------------------------------------TTTTT---------------------------------------------------------
droKik1	scf7180000302590:78285-78506 -		AGTCTTCTATATACTCTCACTGCTATATATGTCGGAACGGGCTGGATCGGACGACTATATCATATAGCTGCCATACAAATGATC----------------------------------------------------------G--------------------------ATAA-ATTT-TTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAA-T--TATAACTTGGCTGTTTTTCAAT-------A------------------------TT---------------------------------------------------------------------ATTGCATCATT-----TTTG---------------ATG-----ATATAGCCATTTTTTTTATTCCA---------------GAATTTTGGTAAAAATTTTA--TGAAAATC-------------------------------------------------------------------------------------------------------------------------GGACCACTATATCTTATA-GCTGC
droAna3	scaffold_13082:1132017-1132202 -		ATCCTATAGCTG----------------------------------------------------------CCATATAACTGATTGA--------T-------------------------------------C------------------------------------G---AA---------------------------------------------------------AA-TGCAATAACTGCTGTTTTTTAAGTTAGACCGTTGGGACTTTCCACACATGTTAATTTTAGCAAAAATA--------------------------T----------------------------------------------------------CGTATATAAAA----AT---TTC-------ATAAGGATTGGTATAACTTTGGTGTTT------------------------------------------------------------------TTTT-AA-GTTAGAA----------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------ATG----GGACTTGGTACAGATT---------------------------ATATT---------------------------------------------------------
droBip1	scf7180000396535:1187641-1187827 -		ATCCTATAGGTT----------------------------------------------------------CAACACAACTGAACT-----AACTTTTAAGTTTTTGAAAATTTTAAGCTTCGGACTTTTTCTCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTATGGAATTATAAA----CTGCCACTTAACTGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------TGTATATAAACT------------------TTGGCTACG-ACCAAAG----------------------------CTCGCTTTCTTTTCTTGTCA---------------ATG-----GTATTTTTAAATTGCTCT-------------------------------------------------------------------------------------------------------------------------------------TTCCT---------------------------------------------------------
dp5	XR_group8:6019446-6019544 +		CTTCATCT-GTT------------CAATGTGT-----------------------------------------------G-----------------------------------------------------------A---TAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-------------TTCCCCACTTTTCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTTCCAGCAAGCAGGAGGTTTATCTCCAAGCAACGGGTTTCTACAAAATGT
droPer2	scaffold_137:36090-36235 -		CTGGTCTGGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATGCTCTTGATTGCTAAACAAAATATATTAAATAA-AAAATATATATATATTTTTTCGT--------CTAGCTAACAT----------------------------------------------------------------------------------------------------------------------------------------------------TTA------------------TCATTT-AA-TTAAGCA----------------------------ACACTTTT-------CTATC---------------TCA-----TTATATTCATTCAT--------------------------------------------------------------------------------------------------------------------------------TTCATTTCCCTTCA---------------------------------------------------------
droWil2	scf2_1100000004762:1879289-1879371 -		TAATCGAC----------------------------------TCAATCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTCT------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAGTTCTACCAAACAGGATGTTTATCTACAGGCCACAGGTTTCTATAAAATGT
droVir3	scaffold_12855:138796-138972 -		AATTTTCTTCAGAAA----------------------------------------------------------------CTACT----------------------------------------------------------G--------------------------T-CGAATGCTTAAA----------------------------------------------------------TAATGTTTATCTAAGATAATAATCTATTTTGTTTATGAATAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTGTAGGTGTTAACTATAATACGC-------------TTACCAACTATAGTGGTACAATTTTTAA-----------------------------------ATGCGATAGTACGTCCATTCCGTTTAT---------------------------------------------------------------------------------------------------------------------------ATTTATCCTACTTA---------------------------------------------------------
droMoj3	scaffold_2817:1130-1309 +		ATTTTTTTTTAAAAT----------------------------------------------------------------G-----------------------------------------------------------ACTG---TATAT----------------------------------------------------------------------------------A-CAGCGCGGATGTCGAGTTT----------------------------------------------------------------------------------GCTTTTAAAATTCGATAAATCATCTCGTTATGTTTTTATCGAGTAAAAACATTCAAGTTCAAATCAGATGCCACTATAGCTAATTGTGAATGATT---TTTCTTTTT------------------------------------TTTTTTAATTTC------------------TCAAATATT-CAATATA----------------------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:22798765-22798906 -		CAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTT--------TTATCTTTCTT----------------------------------------------------------------------------------------------------------------------------------------------------TCT------------------TAAGTT-AT-TAAAATT----------------------------ACAATATTCTT----TATT-------------TCA-TA-----ATTAATTTCTCTTTATTT-------------------------------------CT-----------------------------------------------------------------------------------T-------------CTTAAACAGCTCAAACAAGCAAGAAGTCTATTTGCAAGCCACTGGCTACTACAAGATGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATTCTTTATCAGTAT----------------------------------------------------------------TGATTGA--------T-------------------------------------T------------------------------------T---GA---------------------------------------------------------TA-CACCAAAAAAACCTGGCTTGGATTTAAATTCTTTTGACTTTTATTTAATGTAAATTAAATTTGAAATTATAAACAAATTGCCTCTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTAACCT------------------TTGATTATT-AGAAATA----------------------------ATAGCTTTGTC----TGTTC---------------ATA-----ATATATTCATATTGTTTATCCTT---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................TTTGACTTTTATTTAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............T----------------------------------------------------------------TGATTGA--------T-------------------------------------T------------------------------------T---GA---------------------------------------------------------TA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATTCTTTATCATTAT----------------------------------------------------------------TGATTGA--------T-------------------------------------T------------------------------------T---GA---------------------------------------------------------TA-TACCAAAAAAACCTGTCTTGGATTTAAATTCTTTTGACTTTTATTTAATGTAAATTAAATTTGAAATTATAAACAAATTGCCTCTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTAACCT------------------TTGATTATT-AGAAATA----------------------------ATAGCTTTGTC----TGTTC---------------ATA-----ATATATTCATATTGTTTATCCTT---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

ATTCTTTATTAGTAT----------------------------------------------------------------C-----------------------------------------------------------A---GAGTCGATACATCCATGTCCGTCTCTT-CATATGTTTCAAAACTGTTTTAATTATTTCTAAAATTTTATTTTGTTCCCATTATTATTGATA-CACCGAAAACACCTGGCTTGGATTTAAATTCTTTCGACTTTTATATATTGTAAATGAAATTTAAGATTATAAATGAACTGCCTGTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTGTAACCT------------------TTGATTATT-AGAAATA----------------------------AGAGCTTTGTC----TGTTT---------------ATAATATTGTATATTTATATTGTTTATCCTC---------------C--------------------------------------------------------------------------------------------------AACT-------------TTCGAACAGTTCAAGCAAAAAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGAAGTATATCTCCAGGCTAC.................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCTACAGGGTTCTACAGAATG.	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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.....................................................................................................................................................ATACATCCATGTCCGTCTCTT-CATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTCCAGGCTACAGGGTTCTACA......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................T--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTGTAACCT------------------TTGATTATT-...................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TATAAATGAACTGCCTGTT--------C-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTG.....................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGTATATCTCCAGGCT...................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCTCCAGGCTACAGGGTTC..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGGCTACAGGGTCAC.........	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droEre2

TTTTCGATTTTA----------------------------------TTAT-----------------TTTTCTT----------------------------------------------------------CCAAACTACTA--------------------------C-GATATGCTAAAAAAAACT---------------------------------------TTGATAGCAACTCG--ACCCTTGCTTAGACTTAACATCT-----------------------TATATATACAAATATATACAAAT-----ATT--------T-----------------------------------------------------------------------------------------------------------------------------------------------------TGAGCTTAGCCT------------------TTGTTTAAT-AGAAATA----------------------------AAAGCTTTGTC----TGTTA-------------TAAAG-----CTATATTCATCATACATAACATC---------------C--------------------------------------------------------------------------------------------------AACT--------------TCAAACAGCTCAAACAAACAGGAAGTATATCTCCAGGCTACAGGGTTCTACAGAATGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TTTTTTAT-CAAAAC----------------------------------------------------------------AAAATGATGATAATAT-------------------------------------T------------------------------------T---AA---------------------------------------------------------AA-TATCACAAAAAA----------------------------------------------------ATATCG-----------------------------------------------------------------------------------------------------------------ATATATA-T--GATATTTCTGATATTTTTTTTCAAATAAAATTTTATTTCCCCTCAATAAAAATATAAAAGTT------------------TCT------------------------------------------------------------TATTAACTTAATTTTCA-TA-----TTTAATTT------CATA-------------------------------------TTTTC------------------------------------------------------------------AT--------------TTAAT-------CT-------------------------------------------------TAATATAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTCAATAAAAATATAAAAGTT------------------TCT------------------------------------------------------------..............................................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-TA-----TTTAATTT------CATA-------------------------------------TTTTC------------------------------------------------------------------AT--------------T......................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCAAATAAAATTTTATTTCCCC...................................................................................................................................................................................................................................................................................................................................................	26	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTGAATTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAATTTAATTTAATATCCACTATATATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATAAACT------------------TCCTTTACGCACAAAAA----------------------------ATAACTTCATT----------------------------------TTATTTAT------------------------------------------------------------------------------------------------------------------------------------GCTATTTTTTTTTC---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCTTTGC-AGGTAT--------TATATAAGTCGGAACCAGCCGGATTGGACATCTATATCTTATAGTTCACATAGGAACTAAC----------------------------------------------------------G--------------------------GCGA-AACAATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAA-T--TATATCTTCGGTGTTTTTTAAC-------A------------------------TATAACCT------------------CCTACGCTT-GGAAATA----------------------------ACATTTAA------------AAAATTTTTTTTTCG-TA-----TTAAATTT------------------------------------------------TA--TTAAAATTGGACGACTATATCATAAAGCTGCCATAGAAACAATTGGAAAAA--------------------------TAGT-------------------CGGGAAATGTAAAAAAAAAGTATATCTTTGG----------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATTGCAGGTAGT------------ATATATGTCGGAACCAACCGGATCGGACAACTATATCTTATAGCTCCCATAGGAAGGATC----------------------------------------------------------A--------------------------AAAA---------------------------------------------------------------------------------------------------------------------------AAAAAACGT-----------------------------------------------------------------------------------------------------------------AAAAAAA-T--TCTAGCTCCGGTGTTTTTTGAA-------A------------------------TTTTACCT------------------TTTACTCTT-GGGAATA----------------------------TATTTTTTATA----TATTT-----------------------CTGAATTTCGGTTTTTTG-------------------------------------TTTTT------------------------------------------------------------------A----------AAAC-------------AAAAAAAAATTAAAATTAA-----------------------------------AAAAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATTGCATGTAGT------------AAATT---CGG--------------------------------------------------------------------------------------------------------------------------------------A-AAAATAAATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAA-T--TACAACTTTGCTGTTTTTTAAA------------------------------TTTTTTTTAG------------------T--------------------------------------------------------------------------------------------------------T---CTTTGGTTTAACAATTCGAATTATGGTTTAAATGTCA--TGAAAATCGGACGACTGTAACATAAAGCTACCATAGAAATAATA----AAATATTAAACAAATTTTTTTTAATGTTTAA-------------CTTT---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTGTAAAACAC---------------------------------------------------ATAGCTCCCAT----------------------------------------------------------T------------------------------------A---AA---------------------------------------------------------AA-TAAAAAAAAAAC-----------TTAAAAAATTTTTTTTTCTATTTATCAAAAATTTACTTTAAGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAAATT------------------ATT---------------------------------------------------------------------------------------------------TACTACAT----------------------------------------------------------CAGA-------------------------------------ACT----------------ACGCTT----TTAGTT---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCTTTTGATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT------------------TCAAATATT-AAATATA----------------------------ATACTTATATA----TATGT---------------ATA-----ATATATTTTTATTTTATT-------------------------------------------------------------------------------------------------------------------------------------TTTTT---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGTCTTCTATATACTCTCACTGCTATATATGTCGGAACGGGCTGGATCGGACGACTATATCATATAGCTGCCATACAAATGATC----------------------------------------------------------G--------------------------ATAA-ATTT-TTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAA-T--TATAACTTGGCTGTTTTTCAAT-------A------------------------TT---------------------------------------------------------------------ATTGCATCATT-----TTTG---------------ATG-----ATATAGCCATTTTTTTTATTCCA---------------GAATTTTGGTAAAAATTTTA--TGAAAATC-------------------------------------------------------------------------------------------------------------------------GGACCACTATATCTTATA-GCTGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATCCTATAGCTG----------------------------------------------------------CCATATAACTGATTGA--------T-------------------------------------C------------------------------------G---AA---------------------------------------------------------AA-TGCAATAACTGCTGTTTTTTAAGTTAGACCGTTGGGACTTTCCACACATGTTAATTTTAGCAAAAATA--------------------------T----------------------------------------------------------CGTATATAAAA----AT---TTC-------ATAAGGATTGGTATAACTTTGGTGTTT------------------------------------------------------------------TTTT-AA-GTTAGAA----------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------ATG----GGACTTGGTACAGATT---------------------------ATATT---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...CTATAGCTG----------------------------------------------------------CCATATAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
.........................................................................TATAACTGATTGA--------T-------------------------------------C------------------------------------G---AA---------------------------------------------------------AA-TGCAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTT------------------------------------------------------------------TTTT-AA-GTTAGAA----------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------ATG----G........................................................................................................	25	14	0.07	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTGTTT------------------------------------------------------------------TTTT-AA-GTTAGAA----------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------A...............................................................................................................	26	17	0.06	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------------------------AG----------------------------------------------------------------------------------------------------------------------------------------------ATG----GGACTTGGTACAGATT---------------------------..............................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................TATAACTGATTGA--------T-------------------------------------C------------------------------------G---AA---------------------------------------------------------AA-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTATAACTTTGGTGTTT------------------------------------------------------------------T..........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1

droBip1

ATCCTATAGGTT----------------------------------------------------------CAACACAACTGAACT-----AACTTTTAAGTTTTTGAAAATTTTAAGCTTCGGACTTTTTCTCCAAAT------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTATGGAATTATAAA----CTGCCACTTAACTGCAAC-----------------------------------------------------------------------------------------------------------------------------------------------------TGTATATAAACT------------------TTGGCTACG-ACCAAAG----------------------------CTCGCTTTCTTTTCTTGTCA---------------ATG-----GTATTTTTAAATTGCTCT-------------------------------------------------------------------------------------------------------------------------------------TTCCT---------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

CTTCATCT-GTT------------CAATGTGT-----------------------------------------------G-----------------------------------------------------------A---TAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-------------TTCCCCACTTTTCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAGTTCCAGCAAGCAGGAGGTTTATCTCCAAGCAACGGGTTTCTACAAAATGT

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

CTGGTCTGGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATGCTCTTGATTGCTAAACAAAATATATTAAATAA-AAAATATATATATATTTTTTCGT--------CTAGCTAACAT----------------------------------------------------------------------------------------------------------------------------------------------------TTA------------------TCATTT-AA-TTAAGCA----------------------------ACACTTTT-------CTATC---------------TCA-----TTATATTCATTCAT--------------------------------------------------------------------------------------------------------------------------------TTCATTTCCCTTCA---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TAATCGAC----------------------------------TCAATCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTTTCT------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCAGTTCTACCAAACAGGATGTTTATCTACAGGCCACAGGTTTCTATAAAATGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AATTTTCTTCAGAAA----------------------------------------------------------------CTACT----------------------------------------------------------G--------------------------T-CGAATGCTTAAA----------------------------------------------------------TAATGTTTATCTAAGATAATAATCTATTTTGTTTATGAATAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTGTAGGTGTTAACTATAATACGC-------------TTACCAACTATAGTGGTACAATTTTTAA-----------------------------------ATGCGATAGTACGTCCATTCCGTTTAT---------------------------------------------------------------------------------------------------------------------------ATTTATCCTACTTA---------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA-----------------------------------ATGCGATAGTACGTCCA............................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAGAAA----------------------------------------------------------------CTACT----------------------------------------------------------G--------------------------T-CGAATGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAATTTTTAA-----------------------------------ATGCGATC.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAA-----------------------------------ATGCGATAGTACG................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CTACT----------------------------------------------------------G--------------------------T-CGAATGCTTAAA----------------------------------------------------------TA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGGTACAATTTTTAA-----------------------------------A............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTAT---------------------------------------------------------------------------------------------------------------------------ATTTATCCTACTTA---------------------------------------------------------	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGTAGGTGTTAACTA.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CTTCAGAAA----------------------------------------------------------------CTACT----------------------------------------------------------G--------------------------T-CGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTGTAGGTGTTAACT..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTTTTTTTTAAAAT----------------------------------------------------------------G-----------------------------------------------------------ACTG---TATAT----------------------------------------------------------------------------------A-CAGCGCGGATGTCGAGTTT----------------------------------------------------------------------------------GCTTTTAAAATTCGATAAATCATCTCGTTATGTTTTTATCGAGTAAAAACATTCAAGTTCAAATCAGATGCCACTATAGCTAATTGTGAATGATT---TTTCTTTTT------------------------------------TTTTTTAATTTC------------------TCAAATATT-CAATATA----------------------------ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCAAATCAGATGCCACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.45	9	9	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCAAATCAGATGCCACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.25	5	4	0	0	0	0	1
...................................................................................................................................................ATAT----------------------------------------------------------------------------------A-CAGCGCGGATGTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	1	0	0	0	0	3
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCAAATCAGATGCCACTA..............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.20	4	4	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTTCAAATCAGATGCCACTA..............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCAAATCAGATGCCACT...............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCAAATCAGATGCCACTATA............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACTATAGCTAATTGTGAATG..............................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TCAAATCAGATGCCACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATCGAGTAAAAACATTCAAGTTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TCAAGTTCAAATCAGATGCC..................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................AT----------------------------------------------------------------------------------A-CAGCGCGGATGTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAATCAGATGCCACTATAG...........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCAAATCAGATGCCACT...............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................ATAT----------------------------------------------------------------------------------A-CAGCGCGGATGTCGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CAAGTTCAAATCAGATGCCACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................CGGATGTCGAGTTT----------------------------------------------------------------------------------GCTTTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................GATAAATCATCTCGTTATGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCAAATCAGATGCCACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAAAATTCGATAAATCATCTCGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TTTTTATCGAGTAAAAACATTCAAGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AATCAGATGCCACTATAGCTAATT.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTTCAAATCAGATGCCAC................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATCAGATGCCACTATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................TTATCGAGTAAAAACATTCAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTTCAAATCAGATGCCACTAT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0

droGri2

CAAATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCTT--------TTATCTTTCTT----------------------------------------------------------------------------------------------------------------------------------------------------TCT------------------TAAGTT-AT-TAAAATT----------------------------ACAATATTCTT----TATT-------------TCA-TA-----ATTAATTTCTCTTTATTT-------------------------------------CT-----------------------------------------------------------------------------------T-------------CTTAAACAGCTCAAACAAGCAAGAAGTCTATTTGCAAGCCACTGGCTACTACAAGATGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-11.1	-11.1	-10.9	-10.9

dsi_23912

3l:21456414-21456563 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads