ID:

dsi_23886

 Coordinate:

2r:4829459-4829515 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_4829319_4829458_-]; exon [2r_4829230_4829458_-]; CDS [2r_4829516_4829722_-]; exon [2r_4829516_4829722_-]; intron [2r_4829459_4829515_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
ATGCACTTACGTCAACCGGCGGACCAAAATTGTAACAGTGGAAACAATAAGTAAGCGACTATCAATTTAAATTGTATACCCGAAACTGACCACGTTAAAATTTGTAGTTTATCCCCCCGAAATCGGTCGCATATTGAGTCAATATTATATGAGCGGG
**************************************************.....((..(((((((....)))).)))..)).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
.............................................................................................................TATCACCCTGAAATCGGT.............................. 18 2 2 1.00 2 2 0 0 0 0 0 0 0
...............................................................................TCGGAACTGACCACGGTAAAA......................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................................GTTTATCACCCTGAAATCG................................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................TTATCACCCTGAAATCGGT.............................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0
................CGGCGGACCAAAATTGTAACA........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
.......TACGTCAACCGGCGGACCAAAATTGT............................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................TTTATCACCCTGAAATCGG............................... 19 2 3 0.67 2 2 0 0 0 0 0 0 0
..........................................................................................................GTCTATCACCCTGAAATCGGT.............................. 21 3 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................................................TTATCACCCTGAAATCGG............................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................AGCTTATCACCCTGAAATCGG............................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................TATCACCCTGAAATCGG............................... 17 2 7 0.29 2 2 0 0 0 0 0 0 0
........................................................................TGTAGACCCGAAACC...................................................................... 15 2 20 0.25 5 1 0 0 0 0 4 0 0
...........................................................................................................TCTATCACCCTGAAATCGGT.............................. 20 3 4 0.25 1 0 0 0 0 0 1 0 0
.............................................................................................................TATCCACCCGAAATCGG............................... 17 1 5 0.20 1 0 0 1 0 0 0 0 0
............................................................................................................TTATCACCCCGGAATTGGT.............................. 19 3 20 0.15 3 0 0 0 0 0 0 2 1
...........................................................................................................TTTATCACCCTGAAATC................................. 17 2 20 0.10 2 2 0 0 0 0 0 0 0
............................................................................................................TTAACCCCCTGAAATCGGTT............................. 20 3 11 0.09 1 0 0 0 1 0 0 0 0
........................................................................................ACCACGTTAATATTCGT.................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0 0
.......................................................................TTGTAGACCCGAAACC...................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TACGTGAATGCAGTTGGCCGCCTGGTTTTAACATTGTCACCTTTGTTATTCATTCGCTGATAGTTAAATTTAACATATGGGCTTTGACTGGTGCAATTTTAAACATCAAATAGGGGGGCTTTAGCCAGCGTATAACTCAGTTATAATATACTCGCCC
**************************************************.....((..(((((((....)))).)))..)).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
...............GGCCGCCTGGTTTTAACATTGTCACCT................................................................................................................... 27 0 1 1.00 1 1

Generated: 04/23/2015 at 06:33 AM