ID:

dsi_23869

 Coordinate:

3r:4413670-4413736 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGGGATCGAAGACGATCGACGGTAGCGGTCGCACAGCAGGCACCATCGAGTGAGTCATCCGAAATTCTCGAAACTCTGGGTATCGGGTTCATTGTTCCCTTTCTTTCTGCTTTTAGCATGGACAAGCTGCGCGAGGAGACGGAGCAGGCCGATCTGGACAAGAAGA
**************************************************((((...((((((.((((..........)))).))))))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
..................................CAGTAGGCACCATCAA..................................................................................................................... 16 2 20 140.20 2804 1850 531 423 0 0 0 0 0 0 0
AGGGGATCGAAGATGATC..................................................................................................................................................... 18 2 7 23.57 165 0 0 0 107 2 47 0 9 0 0
..............................CTCACAGGAGGCACCA......................................................................................................................... 16 2 20 12.75 255 0 4 0 0 251 0 0 0 0 0
.GGGGCTCGAAGACGATC..................................................................................................................................................... 17 1 2 5.00 10 7 3 0 0 0 0 0 0 0 0
.GGGGCTCGAAGACGAT...................................................................................................................................................... 16 1 5 4.00 20 13 1 4 0 1 0 0 0 1 0
GGGGGCTCGAAGACGATC..................................................................................................................................................... 18 2 2 3.50 7 3 1 2 1 0 0 0 0 0 0
.GGGGCTCGAAGACGATCA.................................................................................................................................................... 18 2 6 3.17 19 8 3 7 0 0 1 0 0 0 0
.GGGGATCGAAGACGA....................................................................................................................................................... 15 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.GGGGATCGAAGATGATCA.................................................................................................................................................... 18 2 3 3.00 9 1 0 1 4 0 2 1 0 0 0
.GGGGCTCGAAGACGA....................................................................................................................................................... 15 1 8 2.88 23 11 2 8 0 0 0 0 0 1 1
GGGGGCTCGAAGACGATCA.................................................................................................................................................... 19 3 11 1.82 20 5 3 9 2 0 0 0 0 1 0
..............................CGCACTGTAGGCACCATCAA..................................................................................................................... 20 3 8 1.38 11 4 4 2 0 0 0 0 0 1 0
GGGGGCTCGAAGACGAT...................................................................................................................................................... 17 2 12 1.25 15 12 1 2 0 0 0 0 0 0 0
.............................................................................................................................AGCTGCGCGAGGAGACGGAGCAG................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
TGGGGATCGAAGATGATC..................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................CATGGACAAGCTGCGCGAGGAGA........................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................TCGCACAGGAGGCACCA......................................................................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.GGGGATCGAAGACGATCA.................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGGCCGATCTGGACAAGAAGA 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................TCGCACTGTAGGCACCATCAA..................................................................................................................... 21 3 3 1.00 3 2 0 1 0 0 0 0 0 0 0
..............................CGCACAGGAGGCACCA......................................................................................................................... 16 1 4 0.50 2 0 0 0 0 2 0 0 0 0 0
AGGGGATCGAAGACGATCA.................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.GGGGATCGAAGACGATCAGA.................................................................................................................................................. 20 3 9 0.44 4 4 0 0 0 0 0 0 0 0 0
.GGGGATCGAAGATGAT...................................................................................................................................................... 16 1 5 0.40 2 0 0 1 0 1 0 0 0 0 0
.GGGGATCGAAGACTATCA.................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCCGATCTGGACAGGAA.. 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
GGGGGATCGAAGATGATC..................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
AGGGGATCGAAGACGA....................................................................................................................................................... 16 1 7 0.29 2 1 0 1 0 0 0 0 0 0 0
..GGGCTCGAAGACGATC..................................................................................................................................................... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.GGGGCTCGAAGACGATCC.................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..................................CAGCAGGCACCATCAA..................................................................................................................... 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.GGGGATCGAAAACGATCA.................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
AGGGGATCGAAGACG........................................................................................................................................................ 15 1 14 0.14 2 1 0 1 0 0 0 0 0 0 0
...........GACGATCGACGTCAGCTGT......................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0
...................................................................CTCGAAAGTATGGGTAGCG................................................................................. 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0
...GGCTCGAAGACGATC..................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0
..............................CGGACAGTAGGCACCATCAA..................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................AAGCTGCACGAGGAGA........................... 16 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
..GGGATCGAAGATGATCA.................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................AGGCCGTTATGGACAGGA... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACCCCTAGCTTCTGCTAGCTGCCATCGCCAGCGTGTCGTCCGTGGTAGCTCACTCAGTAGGCTTTAAGAGCTTTGAGACCCATAGCCCAAGTAACAAGGGAAAGAAAGACGAAAATCGTACCTGTTCGACGCGCTCCTCTGCCTCGTCCGGCTAGACCTGTTCTTCT
**************************************************((((...((((((.((((..........)))).))))))))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
.............................................................................................................................................ACCCGTCCGGCTAGACCTG....... 19 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................GGAAAGAAAGACGAA...................................................... 15 0 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................GGAAAGAGAGACGAAAA.................................................... 17 1 18 0.22 4 0 4 0 0 0 0 0
.................................................TCAGTCAATAGGCTTTAA.................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0
................................................................................................................................ACTCGCTCCCCTGCCTCG..................... 18 2 7 0.14 1 0 0 0 0 1 0 0
............................................................GCTTTAAGGGCTTTGAG.......................................................................................... 17 1 8 0.13 1 0 1 0 0 0 0 0
..................................................................AGAGCTTAGAGACCCA..................................................................................... 16 1 16 0.06 1 0 0 0 0 0 1 0
...CCAAGCTACTGCTAGCAGC................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 06:34 AM