dsi_23845

exon [2l_13205124_13205320_+]; exon [2l_13205389_13205914_+]; CDS [2l_13205124_13205320_+]; CDS [2l_13205389_13205914_+]

Sense Strand Reads

Anti-sense strand reads

##################################################--------------------------------------------------------------------################################################## TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGGCTATACAAATCATCTGGAACATACGTTCTAATGCATGTATTGTATGTTGTATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA ************************************************(((((((((((.((((((..(((.((((((....))))))....)))..)))))))))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M025 embryo	SRR553486 Makindu_3 day-old ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M053 female body	O001 Testis	M024 male body	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR902009 testis
.................................................................................................TATTGTATGTTGTATTTGCAG..................................................	21	0	1	68.00	68	37	3	1	13	2	5	3	1	2	1	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCAGT.................................................	22	0	1	61.00	61	18	20	3	2	4	11	0	1	0	0	0	1	0	1
.................................................................................................TATTGTATGTTGTATTTGCAGA.................................................	22	1	1	56.00	56	4	5	18	0	11	1	10	7	0	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGC....................................................	19	0	1	38.00	38	36	0	0	0	0	0	0	0	0	1	1	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCA...................................................	20	0	1	38.00	38	28	0	4	3	0	1	0	1	0	1	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCAGC.................................................	22	1	1	5.00	5	4	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCAGG.................................................	22	1	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TTTTATGATAGCAAAGGTCCCATTGA........................	26	0	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCAGAA................................................	23	2	1	2.00	2	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..................................................................................................ATTGTATGTTGTATTTGCAGA.................................................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTATGGCTATACAAATCATCTGGA..........................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCT...................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ATTGTATGTTGTATTTGCAGT.................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTGCAGAAA...............................................	24	3	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................GTGAGTATGGCTATACAAATCATCTG............................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................TGAGTATGGCTATACAAATCATCTGGA..........................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................TATTGTATGTTGTATTTG.....................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim2	2l:13205271-13205438 +	dsi_23845	TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGAACATACGTTC-------TAAT-----GCATG----------------------T-----------------A-------------TTGTAT--GTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droSec2	scaffold_16:1746015-1746182 +	dse_353	TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGAACATACGTTC-------TAAT-----GCATG----------------------T-----------------A-------------TTGTAT--GTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
dm3	chr2L:13609938-13610105 +	dme-mir-2489	TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGAACGTAAGTTC-------TAAT-----GTATG----------------------T-----------------A-------------TTGTAT--GTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droEre2	scaffold_4929:11847801-11847962 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATCTA----AA-T--------------C-----------------AGCCG-AACGTGTATTC-------TAAT-----GT---------------------------------------------------------TTGCAC--TTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droYak3	2L:10029671-10029836 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGATGTGAGTATGG------C--TATTTA----AA-T--------------C-----------------AACCG-AACGT------------------------ATGTATGT----------TATATAGT-------------------------------TTGCAT--TTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droEug1	scf7180000409452:191269-191429 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATAG------T--ACT-TA----AA-T----TATA-------ATTTTAAAT------------------CACATTA-------TAA------------------------------------------------------------------TGTAC--TTTGTACTTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droBia1	scf7180000302408:2742657-2742821 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGAGGTGAGTACTC------C--TA---A-----AATATACT---AAAA---ATAAGAAA--------------------ACATTC-------TAA---------------------------------C-----------------A-------------ACCAATA-TTTG-CCCTTGCAGATTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droTak1	scf7180000415285:144366-144531 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATAT------A--AATATA----TA-T--------------T-----------------AATTAAAATTTAAATCT-------TAAA-----TC--G----------------------T-----------------A-------------ACATTT--GTTG-TACTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droEle1	scf7180000491338:1217874-1218038 +		TCCATCTTAGACTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTG------T--CATTAA---G-A-T----A---------------------------GAACA--ACAT------------------------AAACATGT----------TAAACA-T-----------------A----T--------TTGTAT--TTT--TTTTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droRho1	scf7180000780107:475209-475370 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTT------T--T---TA----AA-T--------------AATTTAAA---------------AAACTTACAACT-------TAAT-----GT--G----------------------T---------------------------------ACAC--CTTG-TATTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droFic1	scf7180000453925:389393-389555 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTG------C--TCTCAA---G-A-T----TAAA-------ATCAAAAAC-------------------CCTTAC-------TAAG-----AC-----------------------A-T-----------------A-----------------CT--TTTT-TATTTTTAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA
droKik1	scf7180000302656:77420-77583 +		TCCATCTTAGATTAAAGCGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTAC-----A--TACG-C----AA-T--------------T-----------------ATATTAAT---------TTTAAGT-------------------AATGCTCG---------T-----------------A-------------TT-TCC--TTTA-CTTTTCCAGTTTTATGATAGCAAGGGCCCCATTGATGTCTCCACGGATCATATCTATGA
droAna3	scaffold_12943:1669964-1670138 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTGT-----C--TCTGTC----AA-G--------------T-----------------GTATGGTACTAATA---TTTAACT-------------------AATTCTTGTAT------T-----------------A-------------ACTTGT--TTTT-AATTTCCAGTTTTATGATAGCAATGGCCCCATTGATGTCTCCACGGATCATATCTATGA
droBip1	scf7180000396728:1558126-1558292 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTA------A--TATAAT---C-C-T----TAAA-------ATATAAAAT-------------------CAATAA-------TTAA-----TC--------A----------------A-----------------A-------------ACCTCT--TTCT-GATCCATAGTTTTATGATAGCAATGGCCCCATTGATGTCTCCACGGATCATATCTATGA
dp5	4_group1:1874114-1874281 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTT------T--CC---A-----TACCTTTT---TAAAACA-------ATCATTTTGA---TA-TACAT------------------------ATA----------------------T-----------------A-------------TTTTTT--GTTG-TG--TTTAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCATATCTATGC
droPer2	scaffold_5:3326139-3326312 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATAT------C--TTTGCC----ATCTCTTTT---TAAAATA------------------------TTTTATATTT-------TTATATATTACATA----------------------T-----------------A-------------TTTTTT--G-----GTGTTTAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCATATCTATGC
droWil2	scf2_1100000004585:852516-852683 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGATGTGAGTATAT------T--AT----------------------------------------------------------------------------------------------------ATCTTTTGTCCCATTTTGGAATATGTTTTTGAATACCTTTTC--TTTG-GGATTTCAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCACATCTATGA
droVir3	scaffold_12723:5236320-5236483 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTA------T--CA---ACATA-T-A----T---------------------------GAATT--ATT-------TTAAAAT-------------------AATAATCG---------A-----------------A--------------TTTAA--TTTG-TTATCCCAGTTTTATGATAGCAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA
droMoj3	scaffold_6500:16444073-16444232 +		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTACAGAGGCCCTATCAA----AA-T--------------A-----------------------------------------TCAT-----TCGTG----------------------T-----------------A-------------TCTAATATAAT--ATTTTTCAGTTTTATGATAACAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA
droGri2	scaffold_15126:8263458-8263622 -		TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTT------A--TT--AA------CTTCATT---CAAC------------------------GTAATATACATAC-------TAAA-----AT---------------------------------------------------------ATGAATACATC--ATTTTGCAGTCTTATGATAGCAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGAACATACGTTC-------TAAT-----GCATG----------------------T-----------------A-------------TTGTAT--GTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCAG..................................................	21	1	68.00	68	37	0	3	2	1	13	1	1	3	2	0	5	0	0
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCAGT.................................................	22	1	61.00	61	18	0	20	0	0	2	1	3	0	4	1	11	0	1
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGC....................................................	19	1	38.00	38	36	1	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCA...................................................	20	1	38.00	38	28	0	0	0	1	3	1	4	0	0	0	1	0	0
.....................................................................................................................................................................................................................................TTTTATGATAGCAAAGGTCCCATTGA........................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..................................................GTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGA.............................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................A-------------TTGTAT--GTTG-TATTTGCAGT.................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................GTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTG...............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................TGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGA.............................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTG.....................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGAACATACGTTC-------TAAT-----GCATG----------------------T-----------------A-------------TTGTAT--GTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCAGT.................................................	22	1	136.00	136	5	13	100	18
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCAG..................................................	21	1	106.00	106	6	9	19	72
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGCA...................................................	20	1	54.00	54	2	4	1	47
...............................................................................................................................................................................T-----------------A-------------TTGTAT--GTTG-TATTTGC....................................................	19	1	10.00	10	0	0	0	10
...............................................................................................................................................................................................................TTGTAT--GTTG-TATTTGCA...................................................	18	1	1.00	1	0	0	0	1
..................................................GTGAGTATGG------C--TATACA----AA-T--------------C-----------------ATCTGGA.............................................................................................................................................................	28	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................A-------------TTGTAT--GTTG-TATTTGC....................................................	18	1	1.00	1	0	0	0	1
..........................................................................A----AA-T--------------C-----------------ATCTGGAACATACGTT....................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................A-------------TTGTAT--GTTG-TATTTGCAG..................................................	20	1	1.00	1	0	0	1	0

droEre2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATGG------C--TATCTA----AA-T--------------C-----------------AGCCG-AACGTGTATTC-------TAAT-----GT---------------------------------------------------------TTGCAC--TTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head
.....CTTAGATTAAAACGTGATTTAAAT..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droYak3

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGATGTGAGTATGG------C--TATTTA----AA-T--------------C-----------------AACCG-AACGT------------------------ATGTATGT----------TATATAGT-------------------------------TTGCAT--TTTG-TATTTGCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body
.....................................................................................................................................................................................................................................TTTTATGATAGCAAAGGTCCCATTGAT.......................	27	1	1.00	1	0	0	0	1	0	0	0

droEug1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATAG------T--ACT-TA----AA-T----TATA-------ATTTTAAAT------------------CACATTA-------TAA------------------------------------------------------------------TGTAC--TTTGTACTTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGAGGTGAGTACTC------C--TA---A-----AATATACT---AAAA---ATAAGAAA--------------------ACATTC-------TAA---------------------------------C-----------------A-------------ACCAATA-TTTG-CCCTTGCAGATTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATAT------A--AATATA----TA-T--------------T-----------------AATTAAAATTTAAATCT-------TAAA-----TC--G----------------------T-----------------A-------------ACATTT--GTTG-TACTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCCATCTTAGACTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTG------T--CATTAA---G-A-T----A---------------------------GAACA--ACAT------------------------AAACATGT----------TAAACA-T-----------------A----T--------TTGTAT--TTT--TTTTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTT------T--T---TA----AA-T--------------AATTTAAA---------------AAACTTACAACT-------TAAT-----GT--G----------------------T---------------------------------ACAC--CTTG-TATTTTCAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTG------C--TCTCAA---G-A-T----TAAA-------ATCAAAAAC-------------------CCTTAC-------TAAG-----AC-----------------------A-T-----------------A-----------------CT--TTTT-TATTTTTAGTTTTATGATAGCAAAGGTCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCCATCTTAGATTAAAGCGTGATTTAAATACATTTAGCAATAAGTTAGACGTGAGTATTAC-----A--TACG-C----AA-T--------------T-----------------ATATTAAT---------TTTAAGT-------------------AATGCTCG---------T-----------------A-------------TT-TCC--TTTA-CTTTTCCAGTTTTATGATAGCAAGGGCCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTGT-----C--TCTGTC----AA-G--------------T-----------------GTATGGTACTAATA---TTTAACT-------------------AATTCTTGTAT------T-----------------A-------------ACTTGT--TTTT-AATTTCCAGTTTTATGATAGCAATGGCCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTA------A--TATAAT---C-C-T----TAAA-------ATATAAAAT-------------------CAATAA-------TTAA-----TC--------A----------------A-----------------A-------------ACCTCT--TTCT-GATCCATAGTTTTATGATAGCAATGGCCCCATTGATGTCTCCACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATTT------T--CC---A-----TACCTTTT---TAAAACA-------ATCATTTTGA---TA-TACAT------------------------ATA----------------------T-----------------A-------------TTTTTT--GTTG-TG--TTTAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCATATCTATGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................CGTGATTTAAATACATTTAGC.................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TTTATGATAGCAACGGCCCCA............................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0

droPer2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGACGTGAGTATAT------C--TTTGCC----ATCTCTTTT---TAAAATA------------------------TTTTATATTT-------TTATATATTACATA----------------------T-----------------A-------------TTTTTT--G-----GTGTTTAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCATATCTATGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGCGATAAGTTAGATGTGAGTATAT------T--AT----------------------------------------------------------------------------------------------------ATCTTTTGTCCCATTTTGGAATATGTTTTTGAATACCTTTTC--TTTG-GGATTTCAGTTTTATGATAGCAACGGCCCCATTGATGTCTCCACGGATCACATCTATGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTA------T--CA---ACATA-T-A----T---------------------------GAATT--ATT-------TTAAAAT-------------------AATAATCG---------A-----------------A--------------TTTAA--TTTG-TTATCCCAGTTTTATGATAGCAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body
.CCATCTTAGATTAAAACGTGATTTAA............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TAGCAACGGCCCCATTGATGTCT...................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTACAGAGGCCCTATCAA----AA-T--------------A-----------------------------------------TCAT-----TCGTG----------------------T-----------------A-------------TCTAATATAAT--ATTTTTCAGTTTTATGATAACAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TCCATCTTAGATTAAAACGTGATTTAAATACATTTAGTGATAAGTTAGACGTGAGTATTT------A--TT--AA------CTTCATT---CAAC------------------------GTAATATACATAC-------TAAA-----AT---------------------------------------------------------ATGAATACATC--ATTTTGCAGTCTTATGATAGCAACGGCCCCATTGATGTCTCAACGGATCATATCTATGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................ATGATAGCAACGGCCCCATTGATG......................	24	1	1.00	1	1	0

dsi_23845

2l:13205321-13205388 +

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads