dsi_23831

TCGGGCAATGCCTACGTAACTGCGACCTCGTACCCCGCACAGACCACCGGGTAAGTACGGAGCCAGAAGTGGGGCCGCAAACTATTCTAATGTCCTCGTTTTCCCCGCAGCAACGTGACTGTGCAGATGCCCATGCCGATGAGCCACCAGAACCAGCAGC ************************************************..................((((((....((((...............)))).))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902008 ovaries	SRR902009 testis	M025 embryo	M053 female body	M023 head	GSM343915 embryo	O001 Testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
...............................................................................................................AACGTGACTGTGCAGATGCCC............................	21	0	1	3.00	3	2	0	0	0	0	1	0	0	0	0
...............................................................................................................AACGTGACTGTGCAGATGCCCATGCC.......................	26	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................TGCCGATGAGCCACCAGAACCAGCAGC	27	0	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................AACGTGACTGTGCAGATGCC.............................	20	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................AACGTGACTGTGCAGATGCCCATGCCGA.....................	28	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............GTAACTGCGACCTCGTACCCCG...........................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........TGCCTACGTAACTGCGACCTCGTACC..............................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................GTGACTGTGCAGATGCCCATGCCG......................	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........CCTACGTAACTGCGACC.....................................................................................................................................	17	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................CGGCAACGTGACTGTGCAGATGCCCAT..........................	27	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......ATGCCTACGTAACTGCGACCTCG..................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
........TGCCTACGTAACTGCGACC.....................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......ATGCCTACGTAACTGCGAC......................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................GCAGATGCCCATGCCGATGAGC................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................TGCCGATGAGCCACCAGAACCA.....	22	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................ACGTGACTGTGCAGATGCCCATGCC.......................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................................ACGTGACTGTGCAGATGCCCATGCCGA.....................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................ACGTGACTGTGCAGATGCCCATGCCGATG...................	29	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................AACTGCGACCTCGTACCCCG...........................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................CAGATGCCCATGCCGATGAG.................	20	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................CCGAACCACCGTGACTGTG.....................................	19	3	6	0.17	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................CACCGGCAACGTGACTGTGC....................................	20	3	10	0.10	1	1	0	0	0	0	0	0	0	0	0
.......................................CAGACCACCGGTTAAGG........................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

AGCCCGTTACGGATGCATTGACGCTGGAGCATGGGGCGTGTCTGGTGGCCCATTCATGCCTCGGTCTTCACCCCGGCGTTTGATAAGATTACAGGAGCAAAAGGGGCGTCGTTGCACTGACACGTCTACGGGTACGGCTACTCGGTGGTCTTGGTCGTCG ************************************************..................((((((....((((...............)))).))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR902008 ovaries
.........................GGAGCATGGGCTGTTTCTGGT..................................................................................................................	21	3	1	5.00	5	5	0	0	0	0
..................................................................TTCACCCAGTCGTTTGAAAAGAT.......................................................................	23	3	1	2.00	2	0	2	0	0	0
.......TACGGATGCATTGACGCTGGA....................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
.........................GGAGCATGGGCTGTTTCTGG...................................................................................................................	20	3	3	0.67	2	2	0	0	0	0
...........................AGCATGGGCTGTTTCTGGT..................................................................................................................	19	3	12	0.17	2	2	0	0	0	0
........................................................................................TTACAGGAGAAACACGGGCGT...................................................	21	3	7	0.14	1	0	0	0	0	1
...........................AGCCTGGGGCGTTTCTG....................................................................................................................	17	2	8	0.13	1	0	1	0	0	0
............................................................................................................................................CTCGGGGGTCTTGCTCG...	17	2	13	0.08	1	0	0	0	1	0
...........................................................................................................................................ACTTGCTGGTCCTGGTCGTCG	21	3	15	0.07	1	1	0	0	0	0
.................................................CCATTGATGGCTGGGTCT.............................................................................................	18	3	20	0.05	1	0	0	0	1	0
.................................................GCATTAATGCTTCGGTCTT............................................................................................	19	3	20	0.05	1	0	0	0	1	0
...................................................................................TAAGCTTACAGGTGCAA............................................................	17	2	20	0.05	1	0	1	0	0	0
.......................CGGGAGCATGCGGCGT.........................................................................................................................	16	2	20	0.05	1	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:9426160-9426319 -	dsi_23831	TCGGGC------AATGCCTACGTAACTGCGACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----AGCCA--------GAAGTG--------GGGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTC-CT-----CG--TTT--TCCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGAGCCACCAGAA---------CCAGC---A--------GC
droSec2	scaffold_1:6264876-6265035 -		TCGGGC------AATGCCTACGTAACTGCGACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----AGCCT--------GAAGTG--------GGGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTT-CT-----CG--TTT--TCCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCAGATGAGCCACCAGAA---------CCAGC---A--------GC
dm3	chr2R:8737494-8737653 -		TCGAGC------AATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGGTAAGTACGG-----AGCCT--------AAAGTG--------CTGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTC-CC-----CA--TTT--TCCCAGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGAGCCACCAGAA---------CCAGC---A--------GC
droEre2	scaffold_4845:17076780-17076937 +		GCGGGC------AATGCCTACGTAACTTCACCCTCGTACCCAACACAGAGCAGCGGGTAAGTACGG-----ACCTA---------CAGTG--------CACC---CG-----------------G------------------------------------------------AAACTATGCCAA--TCTC-CT-----CG---TT--TCCCCGCAGCAACGTGACTGTAC---AGATGCCCATGCCGATGCCCCACCAGAA---------CCAGC---A--------GC
droYak3	2R:8224361-8224519 +		GCGGGC------AATGCCTACGTAACTTCAACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----ATGTA---------GAGTG--------GTCC---CG-----------------G------------------------------------------------AAACTATTCTAA--TGTC-TC-----CG--TTT--TTCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGCCCCAACAGAA---------CCAGC---A--------GC
droEug1	scf7180000409672:3896545-3896714 +		GCGGGC------AATGCCTACGCATCTCCCGCACCGTATCCCGCTCAAACTACCAGGTAAGTACGC-----AGG-----ATTGCCAAATG--------CCCC---CA-----------------G---AAGA---AAAC----------------------------------TAACTCTCGCTT--TGTC-TT------T--TTT--GCCCTGCAGCAATGTGACCATGC---AGATGCCCATGCCAATGCCCCAGCAGAA---------CCAAC---A--------GC
droBia1	scf7180000302291:1282615-1282773 +		GCGAGC------AATGCCTACGTGGCTCCCGTGGCATATCCCGCCCAGCCCACCGGGTAAGTACGG-----ATTTA---------AAATG--------GGCC---CG-----------------G------------------------------------------------AAACTCGTCTAA--CGTT-CG-----TC--TTC--TCCCCACAGCAATGTGACCGTAC---AGATGCCCATGCCGATGCCCCAGCATAT---------CCCTC---A--------GC
droTak1	scf7180000415762:407934-408082 +		GCGGGC------AATGCCTACGTAGCTCCCGCCTCGTATCCCGCCCAGACCACCGGGTAAGTACGG-----ATTTA---------AAATG--------GGCC---CG-----------------G------------------------------------------------AAACTATTCCAA--CCTCTTT-----CG--TTC--TCCCCGCAGCAATGTGACCGTGC---AGATGCCCATGCCGATGACCCACCA-------------------------------
droEle1	scf7180000491215:312097-312260 +		GCGGGC------AATGCCTACGGGG------CTCCATATCCAGCCCAGACCACCGGGTAAGTTCGG-----CTT----------GAAATT--------GGCA---CG-----------------G------------------------------------------------AAACTATTGCTA--CATC-TC-----CT--TTT--CACCCGCAGCAATGTGACCGTAC---AGATGCCCATGCCAATGCCCCACCAACA---GCAGCACCAGC---AGCACCA--GC
droRho1	scf7180000779957:159721-159878 +		GCGGGC------AATGTCTACGTAGCTCCCGCTTCGTATCCCGCTCAGACCACCGGGTAAGTTGGG-----ATT----------AAAATT--------GGCA---TG-----------------G------------------------------------------------AAACTATTGCTT--CATC-TC-----CT--TTT--TCCACGCAGCAATGTGACCGTAC---AGATGCCCATGCCGATGCCCCAACAGCA---------ACAGT---A--------CC
droFic1	scf7180000454066:537140-537308 +		GTGGGC------AATGCCTACGCAGCACCCGCTCCATATCTCGGCCAGACCAACGGGTAAGTACTG-----ATTGG---------GATTGGGATTGTGT---AAGCA-----------------G------------------------------------------------AAGCTTTACTAA--CGCT-CC-----CGTTTTT--TCCCCACAGCAGCGTAACCGTGC---AGATGCCCATGCCGATGCCCCCGCAGAA---------CCAGC---A--------GC
droKik1	scf7180000302476:2236143-2236323 +		GCGGGC------AATGCCTACGC---TCCCGCTCCATATCCCGCTCAGACCACCGGGTAAGTGTAG-----GATTAGA-GCT-AAAAG------------------T--------------GTAG---------------------CTGTTTCTATGTATCTCTTTTCTCTCT--TTTCTCTCTTTGTG----------TG--TTT--GTCCTGCAGCAATGTGACCGTCC---AGATGCCCATGCCGATGCCCCAGCAGCA---------CCAGC---A--------G-
droAna3	scaffold_13266:6214546-6214705 -		GCGCCC------AATTCCTACACAACGGTGGCCGCCTATCCGGCACAGACCGCTGGGTGAGTTTCT-----AACCA--------GAAATT--------ATAG---CA-----------------G------------------------------------------------CAAGTCCTACAA--CGTA-AA-----TT--TCT--CCTTTTCAGCAATGTCTCCGTTC---AAATGCCCATGCCTCATCAGCCTCATGA---------CCACC---A--------AC
droBip1	scf7180000395839:367958-368132 -		GCGGGT------AATTCTTACTCAACTATGACAGCTTATCCAGCACAGACGACTAGGTAAGTAGTT-----AACCA--------GAAATA--------ATCG---CA-----------------G------------------------------------------------CAAAGCCTACAA--TTTT-GA-----TG--TTT--TCTTTTCAGCAACGTAACCGTTC---AAATGCCAATGCCTCATCTGCCACAGGACCAGCA---TCAGCCACAGCCCCA--AC
dp5	3:14770567-14770729 -		GCTGGA------AATGCCTACGCCG------CTCCATATCCGGCACAGACCACTGGGTAAGTGCAA-----AGA-----ATT----------------GCC-------------------------AAAATCAAAATGCATATTCCA------TAT------------------CAGCATATCAA--TGTC-T-----------TT--CTTCTACAGCAATGTGACTGTTC---AGATGCCCATGCCGATGCAACAGCAGTA---------TCAGC---A--------G-
droPer2	scaffold_4:2843442-2843604 +		GCTGGA------AATGCCTACGCCG------CTCCATATCCGGCACAGACCACTGGGTAAGTGCAA-----ATA-------------ATT--------GGC-------------------------AAAATCAAAATGCATTTTCCA------TAT------------------AAGCATATCAA--TGTC-T-----------TT--CTTCTACAGCAATGTGACTGTTC---AGATGCCCATGCCGATGCAACAGCAGCA---------TCAGC---A--------G-
droWil2	scf2_1100000004510:1188619-1188798 +		CCAAATCCTCCAAATGTCTATTCC---CCTGCACCATACCCAGCTCAGACAACGGGGTAAGTGTTT-----GAC-----ATTCCG-A----TTTGACTT---GAGTCAATTT------TGTG--ACAAAATC-----------------------------------------GAACTATT-------TTT-TT-----TA--CTC--TTTTTCCAGTAATGTGACTGTTC---AAATGCCCATGCCACAGCCAGGGTAAGC---------TTATC---A--------GT
droVir3	scaffold_12875:15822607-15822773 -	dvi_7163	CCT---------CATGCCTATGGAA------CAGCGTATCCCGCCCAGACAACGGGGTAAGTACTGTGCAAGT--AG-CATCCGA-A---ATTTAATGT---CAGCTTATGC-----------------------------------------------------------------TTTATGTA--CGTA-TTTCTTCTG--CTCCCGTCTCCTAGCAATGTGAGCGTAC---AGATGCCGATGCCCATGCACATG--------------CCCGG---A--------GC
droMoj3	scaffold_6496:7962463-7962638 +		CCG---------AACGCCTACGGGA------CACCCTATCCCGCCCAGACCGCAGGGTAAGTGCAC-----ATAGA--------GCAATCGTCTAATGT---CAGTTAATGC-----------------------------------------------------------------TTTAGCCA--CGTT-TC-----TTCCCCA--TCATTATAGCAATGTGACCGTGC---AGATGCCCATGGGTATGCCCATGCCGGGG--GGACAGCCACC---AATGCCAGCGT
droGri2	scaffold_15245:12629051-12629213 -		CCTA---------ACACCTATGGAA------CCCCATATCCTGCACAGACCACCGGGTAAATACTA-----GAT-----ACC----ACACATATAATGT---AAATACAAGCCACTAATGTG------------------TAT---T------TAT------------------ATACATATATA--T---------------ATC--TCCCCTTAGTAACGTGAGCGTGCAGCAGATGCCCATGCCCATGCCT--------------------GG---A--------GT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCGGGC------AATGCCTACGTAACTGCGACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----AGCCA--------GAAGTG--------GGGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTC-CT-----CG--TTT--TCCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGAGCCACCAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................AACGTGACTGTGC---AGATGCCC................................................	21	1	3.00	3	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AACGTGACTGTGC---AGATGCCCATGCC...........................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCCGATGAGCCACCAGAA---------CCAGC---A--------GC	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................................................................................................................................AACGTGACTGTGC---AGATGCC.................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AACGTGACTGTGC---AGATGCCCATGCCGA.........................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................GTAACTGCGACCTCGTACCCCG.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGCCTACGTAACTGCGACCTCGTACC..........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................GTGACTGTGC---AGATGCCCATGCCG..........................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCTACGTAACTGCGACC.................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............ATGCCTACGTAACTGCGACCTCG..............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............TGCCTACGTAACTGCGACC.................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATGCCTACGTAACTGCGAC..................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GC---AGATGCCCATGCCGATGAGC....................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCCGATGAGCCACCAGAA---------CCA................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................ACGTGACTGTGC---AGATGCCCATGCC...........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ACGTGACTGTGC---AGATGCCCATGCCGA.........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................ACGTGACTGTGC---AGATGCCCATGCCGATG.......................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................AACTGCGACCTCGTACCCCG.......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................C---AGATGCCCATGCCGATGAG.....................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

TCGGGC------AATGCCTACGTAACTGCGACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----AGCCT--------GAAGTG--------GGGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTT-CT-----CG--TTT--TCCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCAGATGAGCCACCAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................CATGCAGATGAGCCACCAGAA---------...................	21	1	1.00	1	0	0	0	1
.................CTACGTAACTGCGACCTCGTAC...........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................ATGCAGATGAGCCACCAGA.............................	19	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................TGC---AGATGCCCATGCAGATGAGCC...................................	24	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................TGTGC---AGATGCCCATGCAGATGAG.....................................	24	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................AGATGCCCATGCAGATGAGCCACCA...............................	25	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................GACTGTGC---AGATGCCCATGC............................................	20	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................AGATGCCCATGCAGATGAGC....................................	20	1	1.00	1	0	0	1	0

dm3

TCGAGC------AATGCCTACGTAACTGCGACCTCGTACCCCGTACAGACCACCGGGTAAGTACGG-----AGCCT--------AAAGTG--------CTGC---CG-----------------C------------------------------------------------AAACTATTCTAA--TGTC-CC-----CA--TTT--TCCCAGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGAGCCACCAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.CGAGC------AATGCCTACGTAACTGCGACC.................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTACGTAACTGCGACCTCGTA............................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................AACTGCGACCTCGTACCCC........................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AACGTGACTGTGC---AGATGCC.................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0
.CGAGC------AATGCCTACGTAACT.......................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCAACGTGACTGTGC---AGATGCCCATGCC...........................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................TGCCGATGAGCCACCAGAA---------CCAGC---...........	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................AGCAGCAACGTGACTGTGC---AGATG...................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTACGTAACTGCGACCTCGTACCCC........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGCCGATGAGCCACCAGAA---------CCAGC---A--------GC	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TAACTGCGACCTCGTACCCCGTACA...................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CGTACCCCGTACAGACCACCGGC.........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CCTCGTACCCCGTACAGACCACCGG..........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCGGGC------AATGCCTACGTAACTTCACCCTCGTACCCAACACAGAGCAGCGGGTAAGTACGG-----ACCTA---------CAGTG--------CACC---CG-----------------G------------------------------------------------AAACTATGCCAA--TCTC-CT-----CG---TT--TCCCCGCAGCAACGTGACTGTAC---AGATGCCCATGCCGATGCCCCACCAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................GACTGTAC---AGATGCCCATGCCGA.........................................	23	1	4.00	4	0	0	0	0	3	1	0
...................................GTACCCAACACAGAGCAGCGGC.........................................................................................................................................................................................................................................	22	1	3.00	3	2	0	0	0	1	0	0
..........................................................................................................................................................................................................................AACGTGACTGTAC---AGATGCCCATGC............................................	25	1	2.00	2	0	0	0	0	1	1	0
.....................................ACCCAACACAGAGCAGCGG..........................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
.................CTACGTAACTTCACCCTCGTACCCA........................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................TGTAC---AGATGCCCATGCCGATG.......................................	22	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................CTGTAC---AGATGCCCATGCCGATGCCCCAC.................................	29	1	1.00	1	1	0	0	0	0	0	0
.........................................AACACAGAGCAGCGGGTAA......................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....................................ACCCAACACAGAGCAGCGGC.........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................GATGCCCATGCCGATGCCC....................................	19	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCCCCACCAGAA---------CCAGC---A--------GC	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................CTGTAC---AGATGCCCATGCCGA.........................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGTAC---AGATGCCCATGCCGA.........................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................GACTGTAC---AGATGCCCATGCCGAT........................................	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................CATGCCGATGCCCCACCA...............................	18	1	1.00	1	1	0	0	0	0	0	0
................................CTCGTACCCAACACAGAGCAGCGG..........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.................................TCGTACCCAACACAGAGCAGCGGC.........................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.....................GTAACTTCACCCTCGTACCCAAC......................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................CAACGTGACTGTAC---AGAT....................................................	18	1	1.00	1	0	0	0	0	0	1	0
......................TAACTTCACCCTCGTACCCAACACA...................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................TATGCCAA--TCTC-CT-----CG---TT--T.................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GATGCCCCACCAGAA---------CCAGC---A--------..	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTGTAC---AGATGCCCATGC............................................	18	1	1.00	1	1	0	0	0	0	0	0

droYak3

GCGGGC------AATGCCTACGTAACTTCAACCTCGTACCCCGCACAGACCACCGGGTAAGTACGG-----ATGTA---------GAGTG--------GTCC---CG-----------------G------------------------------------------------AAACTATTCTAA--TGTC-TC-----CG--TTT--TTCCCGCAGCAACGTGACTGTGC---AGATGCCCATGCCGATGCCCCAACAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................CAACGTGACTGTGC---AGATGCCC................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....GC------AATGCCTACGTAACTTCAACCTC...............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................AACTTCAACCTCGTACCCCGCAC....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................CTCGTACCCCGCACAGACCACCGGC.........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CAACGTGACTGTGC---AGATGCCCATGC............................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................TTCAACCTCGTACCCCGCAC....................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GC---AGATGCCCATGCCGATG.......................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTGC---AGATGCCCATGCCGATGCCCC...................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................TAACTTCAACCTCGTACCCCGCAC....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CAACGTGACTGTGC---AGATGCCCATGCC...........................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................TTCAACCTCGTACCCCGCACA...................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CGATGCCCCAACAGAA---------CCAGC---...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GCGGGC------AATGCCTACGCATCTCCCGCACCGTATCCCGCTCAAACTACCAGGTAAGTACGC-----AGG-----ATTGCCAAATG--------CCCC---CA-----------------G---AAGA---AAAC----------------------------------TAACTCTCGCTT--TGTC-TT------T--TTT--GCCCTGCAGCAATGTGACCATGC---AGATGCCCATGCCAATGCCCCAGCAGAA---------CCAAC---A--------GC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCGAGC------AATGCCTACGTGGCTCCCGTGGCATATCCCGCCCAGCCCACCGGGTAAGTACGG-----ATTTA---------AAATG--------GGCC---CG-----------------G------------------------------------------------AAACTCGTCTAA--CGTT-CG-----TC--TTC--TCCCCACAGCAATGTGACCGTAC---AGATGCCCATGCCGATGCCCCAGCATAT---------CCCTC---A--------GC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCGGGC------AATGCCTACGTAGCTCCCGCCTCGTATCCCGCCCAGACCACCGGGTAAGTACGG-----ATTTA---------AAATG--------GGCC---CG-----------------G------------------------------------------------AAACTATTCCAA--CCTCTTT-----CG--TTC--TCCCCGCAGCAATGTGACCGTGC---AGATGCCCATGCCGATGACCCACCA-------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCGGGC------AATGCCTACGGGG------CTCCATATCCAGCCCAGACCACCGGGTAAGTTCGG-----CTT----------GAAATT--------GGCA---CG-----------------G------------------------------------------------AAACTATTGCTA--CATC-TC-----CT--TTT--CACCCGCAGCAATGTGACCGTAC---AGATGCCCATGCCAATGCCCCACCAACA---GCAGCACCAGC---AGCACCA--GC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCGGGC------AATGTCTACGTAGCTCCCGCTTCGTATCCCGCTCAGACCACCGGGTAAGTTGGG-----ATT----------AAAATT--------GGCA---TG-----------------G------------------------------------------------AAACTATTGCTT--CATC-TC-----CT--TTT--TCCACGCAGCAATGTGACCGTAC---AGATGCCCATGCCGATGCCCCAACAGCA---------ACAGT---A--------CC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTGGGC------AATGCCTACGCAGCACCCGCTCCATATCTCGGCCAGACCAACGGGTAAGTACTG-----ATTGG---------GATTGGGATTGTGT---AAGCA-----------------G------------------------------------------------AAGCTTTACTAA--CGCT-CC-----CGTTTTT--TCCCCACAGCAGCGTAACCGTGC---AGATGCCCATGCCGATGCCCCCGCAGAA---------CCAGC---A--------GC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGGGC------AATGCCTACGC---TCCCGCTCCATATCCCGCTCAGACCACCGGGTAAGTGTAG-----GATTAGA-GCT-AAAAG------------------T--------------GTAG---------------------CTGTTTCTATGTATCTCTTTTCTCTCT--TTTCTCTCTTTGTG----------TG--TTT--GTCCTGCAGCAATGTGACCGTCC---AGATGCCCATGCCGATGCCCCAGCAGCA---------CCAGC---A--------G-	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCGCCC------AATTCCTACACAACGGTGGCCGCCTATCCGGCACAGACCGCTGGGTGAGTTTCT-----AACCA--------GAAATT--------ATAG---CA-----------------G------------------------------------------------CAAGTCCTACAA--CGTA-AA-----TT--TCT--CCTTTTCAGCAATGTCTCCGTTC---AAATGCCCATGCCTCATCAGCCTCATGA---------CCACC---A--------AC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................GTCTCCGTTC---AAATGCCCATGCCT..........................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................ATGCCTCATCAGCCTCATGA---------CCACC---A--------AC	28	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................CATGCCTCATCAGCCTCATGA---------C..................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................C---AAATGCCCATGCCTCATC......................................	19	1	1.00	1	1	0	0	0	0	0
............................TGGCCGCCTATCCGGCACAGACCGCT............................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....CC------AATTCCTACACAACGGTGGCCGCCT.............................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................CCATGCCTCATCAGCCTCATG.............................	21	1	1.00	1	1	0	0	0	0	0
..........................GGTGGCCGCCTATCCGGCA.....................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...........................GTGGCCGCCTATCCGGCACAGACCGCT............................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AAATGCCCATGCCTCATCAGCCTCA...............................	29	1	1.00	1	1	0	0	0	0	0
.............ATTCCTACACAACGGTGGCCGC...............................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................ACACAACGGTGGCCGCCTATCCGGC......................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droBip1

GCGGGT------AATTCTTACTCAACTATGACAGCTTATCCAGCACAGACGACTAGGTAAGTAGTT-----AACCA--------GAAATA--------ATCG---CA-----------------G------------------------------------------------CAAAGCCTACAA--TTTT-GA-----TG--TTT--TCTTTTCAGCAACGTAACCGTTC---AAATGCCAATGCCTCATCTGCCACAGGACCAGCA---TCAGCCACAGCCCCA--AC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCTGGA------AATGCCTACGCCG------CTCCATATCCGGCACAGACCACTGGGTAAGTGCAA-----AGA-----ATT----------------GCC-------------------------AAAATCAAAATGCATATTCCA------TAT------------------CAGCATATCAA--TGTC-T-----------TT--CTTCTACAGCAATGTGACTGTTC---AGATGCCCATGCCGATGCAACAGCAGTA---------TCAGC---A--------G-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................GACTGTTC---AGATGCCCATGCCGATG.......................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GACTGTTC---AGATGCCCATGCCGATGC......................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTGACTGTTC---AGATGCCCATGCCGATG.......................................	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GACTGTTC---AGATGCCCATGC............................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTGTTC---AGATGCCCATGCCGATGC......................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGACTGTTC---AGATGCCCATGCC...........................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GACTGTTC---AGATGCCCATGCC...........................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ACTGTTC---AGATGCCCATGCCG..........................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTGACTGTTC---AGATGCCCAT..............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GCCTACGCCG------CTCCATATCCGGC......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AGATGCCCATGCCGATGC......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCAATGTGACTGTTC---AGA.....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................CTACGCCG------CTCCATATCCGGCAC....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATGCCTACGCCG------CTCCATATCCGGCAC....................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GACTGTTC---AGATGCCCATGCCGATGCA.....................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....A------AATGCCTACGCCG------CTCCATATCC.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AGATGCCCATGCCGATGCA.....................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AGATGCCCATGCCGATG.......................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATGTGACTGTTC---AGATGCCCATGCC...........................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGCCCATGCCGATGCAACAG.................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.CTGGA------AATGCCTACGCCG------CTCCATATCC.........................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................ATATCCGGCACAGACCACTGGCA........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................C---AGATGCCCATGCCGATGC......................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................CG------CTCCATATCCGGCACAGA.................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGCCCATGCCGATGCAACAGCA...............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ATGCCTACGCCG------CTCCATATCCG........................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CTGTTC---AGATGCCCATGCCGATG.......................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCTGGA------AATGCCTACGCCG------CTCCATATCCGGCACAGACCACTGGGTAAGTGCAA-----ATA-------------ATT--------GGC-------------------------AAAATCAAAATGCATTTTCCA------TAT------------------AAGCATATCAA--TGTC-T-----------TT--CTTCTACAGCAATGTGACTGTTC---AGATGCCCATGCCGATGCAACAGCAGCA---------TCAGC---A--------G-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................AATGTGACTGTTC---AGATGCCCATGCC...........................................	26	1	7.00	7	7	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGACTGTTC---AGATGCC.................................................	20	1	7.00	7	7	0	0	0	0	0
...........................................................................................................................................................................................................................ATGTGACTGTTC---AGATGCCCATGCC...........................................	25	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGACTGTTC---AGATGCCCA...............................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GTGACTGTTC---AGATGCCCATGCC...........................................	23	1	1.00	1	1	0	0	0	0	0
....................................TATCCGGCACAGACCACTGGC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................TGTGACTGTTC---AGATGCCCATG.............................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................C---AGATGCCCATGCCGATG.......................................	18	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................TC---AGATGCCCATGCCGATGC......................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AGATGCCCATGCCGATGCAACAGC................................	28	1	1.00	1	0	1	0	0	0	0
..................................CATATCCGGCACAGACCACTGGC.........................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................GTTC---AGATGCCCATGCCGATG.......................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................ATGTGACTGTTC---AGATGCCC................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................CTGTTC---AGATGCCCATGCCGATGC......................................	24	1	1.00	1	0	1	0	0	0	0
...............................CTCCATATCCGGCACAGACCACT............................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................ATCCGGCACAGACCACTGGC.........................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................AGATGCCCATGCCGATGCAAC...................................	21	1	1.00	1	0	1	0	0	0	0
.................CTACGCCG------CTCCATATCCGGCAC....................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................CTGTTC---AGATGCCCATGCCGATGCAAC...................................	27	1	1.00	1	0	1	0	0	0	0
......................................TCCGGCACAGACCACTGGCA........................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0

droWil2

CCAAATCCTCCAAATGTCTATTCC---CCTGCACCATACCCAGCTCAGACAACGGGGTAAGTGTTT-----GAC-----ATTCCG-A----TTTGACTT---GAGTCAATTT------TGTG--ACAAAATC-----------------------------------------GAACTATT-------TTT-TT-----TA--CTC--TTTTTCCAGTAATGTGACTGTTC---AAATGCCCATGCCACAGCCAGGGTAAGC---------TTATC---A--------GT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................CTGCACCATACCCAGCTCA...................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................ATGTGACTGTTC---AAATGCCC................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................AATGTGACTGTTC---AAATGCCCATGC............................................	25	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................AATGTGACTGTTC---AAATGCCCA...............................................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................GACTGTTC---AAATGCCCATGCCACAGCCA....................................	28	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................GTAATGTGACTGTTC---AAATGCCCA...............................................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................TGCCCATGCCACAGCCAGG..................................	19	1	1.00	1	0	1	0	0	0
...............GTCTATTCC---CCTGCACCAT.............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................GTAATGTGACTGTTC---AAATGCCCATGCC...........................................	28	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................AATGCCCATGCCACAGCCAGGCAT...............................	24	2	0.50	1	0	1	0	0	0

droVir3

CCT---------CATGCCTATGGAA------CAGCGTATCCCGCCCAGACAACGGGGTAAGTACTGTGCAAGT--AG-CATCCGA-A---ATTTAATGT---CAGCTTATGC-----------------------------------------------------------------TTTATGTA--CGTA-TTTCTTCTG--CTCCCGTCTCCTAGCAATGTGAGCGTAC---AGATGCCGATGCCCATGCACATG--------------CCCGG---A--------GC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.CT---------CATGCCTATGGAA------CAGC...............................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CATGCCTATGGAA------CAGCGT.............................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................GTGAGCGTAC---AGATGCCGA...............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGAGCGTAC---AGATGCCGAT..............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GTAAGTACTGTGCAAGT--AG-CATCCGA-A---ATTTAATGT---CAGCTTATGC-----------------------------------------------------------------.................................................................................................................	46	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................CTATGGAA------CAGCGTATCCC........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGAGCGTAC---AGATGCCGAT..............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............GCCTATGGAA------CAGCGTATCC.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATGCCTATGGAA------CAGCGTATCCCGCCCC...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GCCTATGGAA------CAGCGTATCCC........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................GCGTAC---AGATGCCGATGCCC..........................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TGGAA------CAGCGTATCCCGC......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGAGCGTAC---AGATG...................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TGTGAGCGTAC---AGATGCCGAT..............................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGCCGATGCCCATGCACA...................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.CT---------CATGCCTATGGAA------CAGCGT.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATGCCTATGGAA------CAGCGTATCCCGCCC....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATGCCTATGGAA------CAGCGTATC..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TGTGAGCGTAC---AGATGCCG................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GAA------CAGCGTATCCCGCCCAGACAACGGG..........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AATGTGAGCGTAC---AGATGCC.................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TGCCTATGGAA------CAGCGTATCC.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................GTATCCCGCCCAGACAACGGGC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GGAA------CAGCGTATCCCGCCCA...................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GTGAGCGTAC---AGATGCCGATGCCC..........................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATGCCTATGGAA------CAGCGTATCCC........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCG---------AACGCCTACGGGA------CACCCTATCCCGCCCAGACCGCAGGGTAAGTGCAC-----ATAGA--------GCAATCGTCTAATGT---CAGTTAATGC-----------------------------------------------------------------TTTAGCCA--CGTT-TC-----TTCCCCA--TCATTATAGCAATGTGACCGTGC---AGATGCCCATGGGTATGCCCATGCCGGGG--GGACAGCCACC---AATGCCAGCGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................CAATGTGACCGTGC---AGATGCCCATGG............................................	26	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................GACCGTGC---AGATGCCCATGG............................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GC---AGATGCCCATGGGTATGCCC....................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................ATGTGACCGTGC---AGATGCCCATG.............................................	23	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................GGACAGCCACC---AATGCCAGCAA	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GC---AGATGCCCATGGGTATGC......................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................GTATGCCCATGCCGGGG--GGAC.....................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GTGACCGTGC---AGATGCCCATG.............................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TGCCCATGCCGGGG--GGACAGC..................	21	1	1.00	1	1	0	0	0	0	0

droGri2

CCTA---------ACACCTATGGAA------CCCCATATCCTGCACAGACCACCGGGTAAATACTA-----GAT-----ACC----ACACATATAATGT---AAATACAAGCCACTAATGTG------------------TAT---T------TAT------------------ATACATATATA--T---------------ATC--TCCCCTTAGTAACGTGAGCGTGCAGCAGATGCCCATGCCCATGCCT--------------------GG---A--------GT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................GAGCGTGCAGCAGATGCC.................................................	18	2	0.50	1	1	0

dsi_23831

2r:9426210-9426269 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads