ID:

dsi_2383

 Coordinate:

3l:16096376-16096525 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.0 -23.5 -23.5 -23.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCCTGCTGAAGGACCCAAAAGACAAGAAATAAACCCCGACCCAGCCCTACTACTCGTAGCCATAAACCAAACCAAACCCAACCCAAATCCAATCCAGTGTGAGGCGCAGGCGCATAGACACAGCGACGCCTCGTTCCTTTTGTCCCGTCTCAAGTGCCTAAATGATTTCCCGGAATTTACACCCTGCGTCTGCTTACAGGTGATTGATATCGATCCCTTCTGGCTGCCGACAACCGAGGAGGAGCTGAT
**************************************************((....((((................((.((.......(((...........(((((((((((....((((.((.((((...)))).))..)))).)))))...))))))............)))..........)).))))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 O001
Testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................................................................................GATATCGATCCCTTCTGGCTGCC..................... 23 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................CAAGTGCCTAAATGATTT................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................TGGCTGCCGACAACCGAGGAGGAGCTG.. 27 0 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................TATCGATCCCTTCTGGCTGCC..................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................................................................................TCGATCCCGTCTGGCTCCA..................... 19 3 9 0.11 1 0 0 0 0 1 0
...................................................................................................................................................................................................................CGATCCCGTCTGGCT........................ 15 1 12 0.08 1 0 0 0 0 0 1

Anti-sense strand reads

CGGGACGACTTCCTGGGTTTTCTGTTCTTTATTTGGGGCTGGGTCGGGATGATGAGCATCGGTATTTGGTTTGGTTTGGGTTGGGTTTAGGTTAGGTCACACTCCGCGTCCGCGTATCTGTGTCGCTGCGGAGCAAGGAAAACAGGGCAGAGTTCACGGATTTACTAAAGGGCCTTAAATGTGGGACGCAGACGAATGTCCACTAACTATAGCTAGGGAAGACCGACGGCTGTTGGCTCCTCCTCGACTA
**************************************************((....((((................((.((.......(((...........(((((((((((....((((.((.((((...)))).))..)))).)))))...))))))............)))..........)).))))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 M023
head
..............................CTTTGGGGCTGGGTC............................................................................................................................................................................................................. 15 1 9 1.67 15 11 4 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CAGAGGAATGTCCACTA............................................. 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGAAGACCGACGGCTGTTGGCTCCT......... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................TGCTTTGGGGCTGGGTC............................................................................................................................................................................................................. 17 2 16 0.94 15 10 3 0 0 0 2 0 0 0 0
...............................TTTGGGGCTGGGTCT............................................................................................................................................................................................................ 15 1 13 0.54 7 3 4 0 0 0 0 0 0 0 0
.......................................................................GGGTGTGGGTTTGGTTTAGGTTAGG.......................................................................................................................................................... 25 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
................................TTGGCGCTGGGTCGG........................................................................................................................................................................................................... 15 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AAAGCGGGCAGAGTTCAC............................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................CAAGGAATACAGGGC...................................................................................................... 15 1 14 0.14 2 0 0 0 0 0 0 2 0 0 0
........................TTCATGCTTTGGGGCTGGGT.............................................................................................................................................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.............................................GGGAGGATGAGCAAAGGTAT......................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................GCAGAGTTCACGTAT......................................................................................... 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TAAAGGGTCTTAAATGTAGC................................................................. 20 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
..........................CATGCTTTGGGGCTGGGTC............................................................................................................................................................................................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TAATGGGTCTTAAATGTGGC................................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1
............................ATCTTTGGGGCTGGGT.............................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCACGGATTTACTGACG................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................TTTACTTGGGGCTGGA............................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 01:54 AM