ID:

dsi_23824

Coordinate:

2r:5619056-5619117 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5618888_5619055_-]; CDS [2r_5618888_5619055_-]; CDS [2r_5619118_5619198_-]; exon [2r_5619118_5619300_-]; intron [2r_5619056_5619117_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------################################################## GCTTGCTGATACTGAACAGGAACAATGCAGCAAATACAAACTGGCTGAATGTGAGTGGGGGAAACGGACCACTAACCGCAGGACACCAATCACTTGTTGCTTTCAATTTCAGGATCTGTGCGCCGTGCTATTGGAATTCGCTACCTTGGCCCACAGCTTATT ************************************************((((.(((......(((........))).......))).))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
...TGCTGATACTGAACAGGAACAATGC......................................................................................................................................	25	0	1	3.00	3	2	1	0
................................AATACAGACTGGCTGAGTATGA............................................................................................................	22	3	1	1.00	1	0	0	1

Anti-sense strand reads

CGAACGACTATGACTTGTCCTTGTTACGTCGTTTATGTTTGACCGACTTACACTCACCCCCTTTGCCTGGTGATTGGCGTCCTGTGGTTAGTGAACAACGAAAGTTAAAGTCCTAGACACGCGGCACGATAACCTTAAGCGATGGAACCGGGTGTCGAATAA ************************************************((((.(((......(((........))).......))).))))...................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
........................................................CCCCCTTTGCCTGGTGATTGGC....................................................................................	22	0	1	1.00	1	0	1	0	0	0
.................................................................................................CCGAAGGCTAAAGTCCTAGACA...........................................	22	3	1	1.00	1	0	0	1	0	0
..................................................................................................CGAAGGCTAAAGTCCTAGA.............................................	19	2	3	0.67	2	2	0	0	0	0
.......................................................................................................GCTAAAGTCCTAGACA...........................................	16	1	3	0.33	1	1	0	0	0	0
.......................................................................................................GCTAAAGTCCTAGAC............................................	15	1	17	0.12	2	2	0	0	0	0
.....................................................................................................AGGCTAAAGTCCTAGACA...........................................	18	2	11	0.09	1	0	0	0	0	1
................................TTATGTTTGACCGAGT..................................................................................................................	16	1	12	0.08	1	0	0	0	1	0
....................................................................................................AAGGCTAAAGTCCTAGAC............................................	18	2	12	0.08	1	1	0	0	0	0
...........................................................................GGCGTCATGCGGTTAGT......................................................................	17	2	17	0.06	1	0	0	0	1	0
........................................................................................................TTAAAGTCCTAGGCGC..........................................	16	2	20	0.05	1	0	0	0	0	1
...ACCACTATGACCTGTCC..............................................................................................................................................	17	2	20	0.05	1	1	0	0	0	0
..................................................................................................CGAAGGCTAAAGTCCTA...............................................	17	2	20	0.05	1	1	0	0	0	0

Generated: 04/23/2015 at 07:44 PM