ID:

dsi_23812

Coordinate:

3l:15846044-15846193 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.8	-25.4	-25.4

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

mature

star

Sense Strand Reads

AACAAACGGTGCACGAGAATTAATTACCTCATCTGGCAGTTTGCCAAAATAAATCTTGCAGAATGCAATGCGATTAACGCATGAGCGGGGAGAGGTGTTCATATTTAAGGCTTTCGATTTCATTTGAAAAAAGGCGTGGGCATTTAGATATCATAAACACAAACGTTGAAAAGTGAAATTTTTTAATTATTTATTTTTAGGATTGGCCGAGAACGAGCTTACTATGCGTTGATGATGAGCCAGTTAAATG ************************************************...((((......(((.(((((.....)))))..)))..)))).(((((.(((((((((((((.((.((((....)))).....)).)))).)))))))))....)))))....((((((((((...)))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis
...............................................................................................................................................................................................................CGAGAACGAGGTTACT...........................	16	1	2	1.00	2	2	0	0	0	0
..........................................................................................................................................................................................................TTAGACGAGAACGAGGTTACT...........................	21	3	3	0.67	2	0	2	0	0	0
.............................................................................................................................................................................................................GACGAGAACGAGGTTACT...........................	18	2	3	0.33	1	1	0	0	0	0
.....................................................................................................................................................................................................TAGGATTGGCCGAGC......................................	15	1	5	0.20	1	0	0	1	0	0
.........................................................................................................................................................................AAAGTGAAATTTTTT..................................................................	15	0	6	0.17	1	0	0	1	0	0
...........................................................................................................................................................................................................TAGACGAGAACGAGGTTACT...........................	20	3	6	0.17	1	0	0	0	1	0
..............................................................................................................................................................................................................ACGAGAACGAGGTTACT...........................	17	2	9	0.11	1	1	0	0	0	0
..............................................................................................................................................................ACTAACGTTGAAAAGTTA..........................................................................	18	2	9	0.11	1	0	1	0	0	0
..CAAGCGGTCCACGAGAA.......................................................................................................................................................................................................................................	17	2	11	0.09	1	0	0	1	0	0
..............................................................ATGCAATGCGATGAA.............................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0
................................................................................TTCAGCGGGGAGAGGTG.........................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1
.........................................................................................................TAAGGCTTTAGATTTCG................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0
.......................TTAGCTCATCTGGTAG...................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................ACTTACGTTGAAAAGTGAG.........................................................................	19	3	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................TTTTTAGGATTGGCT..........................................	15	1	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................AAAAGTGAAATTTTT...................................................................	15	0	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

TTGTTTGCCACGTGCTCTTAATTAATGGAGTAGACCGTCAAACGGTTTTATTTAGAACGTCTTACGTTACGCTAATTGCGTACTCGCCCCTCTCCACAAGTATAAATTCCGAAAGCTAAAGTAAACTTTTTTCCGCACCCGTAAATCTATAGTATTTGTGTTTGCAACTTTTCACTTTAAAAAATTAATAAATAAAAATCCTAACCGGCTCTTGCTCGAATGATACGCAACTACTACTCGGTCAATTTAC ************************************************...((((......(((.(((((.....)))))..)))..)))).(((((.(((((((((((((.((.((((....)))).....)).)))).)))))))))....)))))....((((((((((...)))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries
.................................................................................ACTCCCCCGTCTCCACACGTAT...................................................................................................................................................	22	3	2	0.50	1	1	0	0	0
...........................................................................................................TCCGAAGGCTAAAGT................................................................................................................................	15	1	12	0.33	4	1	2	0	1
...........ATGCTCTTAATTAGCGGAG............................................................................................................................................................................................................................	19	3	4	0.25	1	0	0	1	0
........................................................ACGTCTTACGTTAGGCT.................................................................................................................................................................................	17	1	4	0.25	1	0	1	0	0

Generated: 04/23/2015 at 09:58 PM