ID:

dsi_23806

Coordinate:

3r:10287311-10287374 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10287051_10287310_+]; CDS [3r_10287051_10287310_+]; CDS [3r_10287375_10287519_+]; exon [3r_10287375_10287519_+]; intron [3r_10287311_10287374_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------################################################## GCCCTGGCCAACAACTTTGCGCCCGCCAAGCTCACCGTCAAACTAGTCGAGTAGGTTGAGCCGAATCCTTGAGACACAGCCTTTTTATAAATACAACATTCTCACTTCTTTCAGACGCGAGTTCGGACTGGAGCGCTTTGTGCCAGTGAGTTTGTTCGAGGGCA ************************************************..((((((...(((....))).....))))))................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...............................................................................................................................................CAGTGAGTTTGTTCGAGGGCA	21	0	1	2.00	2	2	0	0	0	0	0
...................................................................................................................CGCGAGTTCGGACTGGAG...............................	18	0	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................CCAGTGAGTTTGTTCGAGGGC.	21	0	1	1.00	1	1	0	0	0	0	0
..................................................................................................................ACTCGAGTTCGGACTGGAGCG.............................	21	1	1	1.00	1	0	1	0	0	0	0
.........................................ACGAGTCGAGTAGTTTG..........................................................................................................	17	2	17	0.35	6	0	0	2	3	1	0
.................................................................TGCTTGAGACTCAGCCT..................................................................................	17	2	6	0.33	2	0	0	2	0	0	0
...................................CGTGTAAGTAGTCGAGTA...............................................................................................................	18	3	20	0.10	2	0	0	0	1	0	1
.........................................................................................................TTCTGTCAGACGCGAA...........................................	16	2	20	0.10	2	0	0	2	0	0	0
.........................................................................................................................TTCGGACTGGTGCGC............................	15	1	11	0.09	1	0	0	1	0	0	0
..................................................................................................................ACGCGAGGTCGTACT...................................	15	2	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

CGGGACCGGTTGTTGAAACGCGGGCGGTTCGAGTGGCAGTTTGATCAGCTCATCCAACTCGGCTTAGGAACTCTGTGTCGGAAAAATATTTATGTTGTAAGAGTGAAGAAAGTCTGCGCTCAAGCCTGACCTCGCGAAACACGGTCACTCAAACAAGCTCCCGT ************************************************..((((((...(((....))).....))))))................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	M023 head
.............................................................................................GCTGTAAGAGTGAAGA.......................................................	16	1	3	0.33	1	0	0	1	0	0	0
.....................................................................................................................GCTCAAGCCTTACCTAGC.............................	18	2	3	0.33	1	0	1	0	0	0	0
..GGACCGCTTGTTGAACCTCGG.............................................................................................................................................	21	3	4	0.25	1	1	0	0	0	0	0
..........................................................TCGGCTTGGGAACTCT..........................................................................................	16	1	4	0.25	1	1	0	0	0	0	0
..........................................................................................................................AGCTTGACCTTGCGAAACACC.....................	21	3	6	0.17	1	0	1	0	0	0	0
............................................................TGCTTAGGCACGCTGTGTC.....................................................................................	19	3	9	0.11	1	0	0	0	1	0	0
.............................................CAGCTCATTCACCTCAGCTT...................................................................................................	20	3	11	0.09	1	0	0	0	0	0	1
...........................TTTGAGTGGCAGTTT..........................................................................................................................	15	1	12	0.08	1	1	0	0	0	0	0
.......................................................AAGTCGGCTCAGGAACT............................................................................................	17	2	19	0.05	1	0	0	1	0	0	0
.........................................................CTCGTCTTAGGAACTATA.........................................................................................	18	3	20	0.05	1	0	0	0	0	1	0
..GGGCCGGTTGTTGAA...................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0

Generated: 04/24/2015 at 10:40 AM