ID:

dsi_2380

 Coordinate:

2l:20753534-20753683 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.2 -7.9 -7.9

Flybase annnotation

five_prime_UTR [2l_20753239_20754368_-]; exon [2l_20752748_20754368_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CGCGCGCGATTGTGTGTGTGCGAATATAGTTATTATTGTGCTGTGTGACGCATATAACGGCAAAATCGGGGCGTGTTTGCCATTAGAGAATCTTCAATCGGACAGGTGTCGATGACGGAAAGCTGAAGGTGTCGGGCATTGTAAACAAATCAAAATCTTAAAACCGTGATATGTCTCTATCAAATAATCGCTTATGTTAGTAATTTAGATAATAGAATGACAAGGACACACAGGACAAGATCTATAGAGA
************************************************************************************.((..(((((((((((.((....))))))..........))))))).)).........************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................................................................................GACAAGGACACACAGGACAAGATCT....... 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0
....................................................................................AGAGAATCTTCAATCGGACAG................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................GAATCTTCAATCGGACAGGT............................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTAGTAATGTTGATAGTAGAATGA.............................. 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................CAATCGGGCAGGTGTCGAT......................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTGAAGGTGTCGGGCATTGT............................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAATAGAATGACAAGGACACAC................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................ATGACAAGGACACACAGGACAAGATCT....... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATAATAGAATGACAAGGAC....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAGATAATAGAATGACAAGGAC....................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................AGTTATTATTGTGCTGTGTGACGCATA.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................GACAGGTGTCGATGACGGAAAG................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGGACACACAGGACAAGATC........ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ATTTAGATAATAGAATGACAAGGACA...................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................TATTGTGCTGTGTGACGC....................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................GTTATTATTGTGCTGTGTGACGC....................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................TCTTAAAACCGTGAGATGTCT.......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................AATTTAGATAATAGAATGACAAGGAC....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TAGAGAATCTTCAATCGGACAGGTGT............................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAGCTGAAGGTGTCGGGC................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................GGACAGGTGTCGATGACGGAAAGC............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATGACGGAAAGCTGAAGGTGT...................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AGGACACACAGGACAAGATC........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................ATCTTCAATCGGACAGGTGTC............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGATAATAGAATGACAAGGACACACA.................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................ATGAAAAGGACACACAGGACA............. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACACACAGGACAAGATCTATAGAGA 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AGAGAATCTTCAATCGGA.................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGATACACCGGACAAGA.......... 17 2 7 0.86 6 0 0 5 1 0 0 0 0 0 0 0
..............................................................................................................GAAGACGGAAAGAAGAAGGTGT...................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGGATACACCGGACAAGA.......... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................GTGTTTGCCATTTGAGA................................................................................................................................................................. 17 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................AAAGCTGAGGGTGTAGAGCA................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................ATGACTGTAAGCTGAAG.......................................................................................................................... 17 2 18 0.11 2 0 0 0 0 0 0 0 0 0 0 2
........................................................................................................................................................................................................................................GGACAAGATCAGTAGAG. 17 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................TAGGACAGGTGCCGAT......................................................................................................................................... 16 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AATTTAGATAATGGAA................................. 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCGCGCGCTAACACACACACGCTTATATCAATAATAACACGACACACTGCGTATATTGCCGTTTTAGCCCCGCACAAACGGTAATCTCTTAGAAGTTAGCCTGTCCACAGCTACTGCCTTTCGACTTCCACAGCCCGTAACATTTGTTTAGTTTTAGAATTTTGGCACTATACAGAGATAGTTTATTAGCGAATACAATCATTAAATCTATTATCTTACTGTTCCTGTGTGTCCTGTTCTAGATATCTCT
************************************************************************************************************.((..(((((((((((.((....))))))..........))))))).)).........************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................CCTGTGTGTCCTGTTCTAGAT...... 21 0 1 1.00 1 1 0 0 0 0 0
...CGCGCTAACACACACACGCTT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................ACAGCTACTACCTTTCGACTT........................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................AGCGAATACGATCAATAA............................................. 18 2 5 0.20 1 0 0 0 1 0 0
.................................................................................................................................................................GTGGCACTATAGAGAG......................................................................... 16 2 12 0.08 1 0 0 0 1 0 0
.....................................................................................................................................................AGTTTTATGATTTTGGCA................................................................................... 18 2 15 0.07 1 0 0 0 0 1 0
.....................................................................................................................................CCAGTCACATTGGTTTAGTT................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20753484-20753733 - dsi_2380 CG---------------CGCGCG--AT--------TGTGTG----TGTGCGAA----TATA---GTTATTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AATCGGGGCGTGTTT--GC---CATTAGAG-AATCTT------------------------------CAATCG------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGATA--TGTCTCTA-------T--CAAATAATCGCTTATGTTAGTAATTTAGATAA------------------------------------------------------TAGAATGACAA----GGACACACAGGACAAGATCTATAGAGA-----
droSec2 scaffold_18:1238143-1238392 - CG---------------CGCGCG--AT--------TGTGTG----TGTGCGAA----TATT---GTTATTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AATCGGGGCGTGTTT--GC---CATTAGAG-AATCTT------------------------------CAATCG------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGCTA--TGTCTCTT-------T--CAAATAATCGCTTATGTTACTAATTTAGATAA------------------------------------------------------TAGAATGACAA----GGACACACAGGACAAGATCTATAGAGA-----
dm3 chr2L:21309048-21309317 - CGCCG--------CGATTGTGTG--TG------TGTGTGTG----TGTGCGAA----AATT---GTTGTTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CATTAGAG-AAGCTT-----CGCTC------CGG--AAAAAGCAACAATTG------------G-ACAGGTGTC------GA-TGACG---------------------AAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGCTA--TGTCTCTA-------T--CAAATAATCGCTTATTTTAGTAATTTAGTTAA------------------------------------------------------TAGAATGACAA----GGACAAAC---ACTAGAT---GAGAGA-----
droEre2 scaffold_4845:3189313-3189572 + CG---------------C-CGCGCACG--------TGTGTG----TGTGAGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGTGTGTTT--GC---CATTAGAG-AAGTTT-----CGCTC------CGG--AAAAAGC--------------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT-ACATATTTA--AAACCGTGCTA--GGTCTCTG-------T--CAAAAAATCGCGTCAGTTAGTGAGTTATTTAA------------------------------------------------------TAGAATGACAA----GAACA--C---ACTAAATGTGTAGAGA-----
droYak3 2R:1470284-1470552 + CGCCG------------CGCGCT--CT------TGTGTGTG----TGCGCGAT----TATT---GTTATTATTGT--------------GCTTTCTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--TC---CATTAGCGGAAGCTT-----TGCTC------CGT--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGACG--------------------GGAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------ATTA--AAACCGTGCTA--GGTACCTA-------T--CAAAAATTCGCGTCAGTTAGTGATTTAATTAA------------------------------------------------------TAGAATTACAA----GGACA--C---ATTAGATCTATAGAGA-----
droEug1 scf7180000409063:100092-100357 + CCCCC--------TG--AGTGCT--AT--------CGTGTG----TATGCCAT----AATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CTTTCAAG-AAGCTC-----CTCTC------CGA--AAAAAGCGCGAATCG------------G-ACAGGTGTC------GA-TAATG---------------------GAAAGCTCAA-G------GTGTTG------------------------------------CG---CGT---AGTAAACAAATCAAGGATT-------A--ATGCCGTCTTAAAGCTATCAA-------T--CAAAGCCGTGCGTTAATTAGCAATTTAATTAA------------------------------------------------------GAGAATGCCA------CATG--T---ACCGAATCGTTAGAGT-----
droBia1 scf7180000302422:3622927-3623221 + CTCTAAGTGCGCCCGTGTGTGTG--TG------CGTGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTTTTGCCTTCGTTGGAG-AAGCTC-----AGCGTCTCGTGGGT--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GTTTGGCG---------------------GAAAGCTCGA-GCTGCCGCTGTCG------------------------------------GG---CGT---AGTAAACAAATCAGAGATT-------AGGGCGCCGTGCTG--GGCG-CAAACAACACTCCAAGAAAGACGGCTCAATTAGCAAATTAATCTA------------------------------------------------------GAGACT--------------------GCCGGATCCCTGGGGT-----
droTak1 scf7180000415871:151146-151391 + CAG--------------TGGACGCCTG--------TGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--GC---CATTAGAG-A-GCTT-----CCCTC------GGG--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GC-GAATG---------------------AAAAGCTCAA-G------CTGTCG------------------------------------GT---CGTAGTAGTAAACAAATCGGAGATT----CATA--A--------------TCTCTG-------T--CCAAGAAGCGCGTCAATTAGCAATTTAATCAA------------------------------------------------------GATA------------------T---CCCGAATCCGTGGAGT-----
droEle1 scf7180000491046:2797938-2798161 + CCTCC--------CACTTTTGCG--CG------CGTGTGTG----TACGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTGT--GC---CATTAGAG-AAGCTTCAAACCGCTC------CGTAAAAAAAGCGCCAATCG------------G-GCAGGTGTC------GT-TGA----------------------------------------------------------------------------------------------AGTAAACAAATCAAAGATT--------------------------TCCCA-------T--AAATGAAGCTCTTTAGTTAGCAATTTAATTAA------------------------------------------------------GAT-----------------------ACCAGATCTCGGGAGT-----
droRho1 scf7180000767948:18529-18745 + CT---------------TTTGCG--CG------CGTGTGTG----TACGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CATTAGAG-AAGCTCCAATCCGCTC------CGGA-AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGA----------------------------------------------------------------------------------------------AGTAAACAAATCAAAGATT--------------------------TTCTG-------T--ACAAGTAGAGCTTTAGTTAGCAATTTAATTAA------------------------------------------------------GAT-----------------------ACCAGATCTCTGAAGT----T
droFic1 scf7180000453932:465436-465697 - TG---------------TACGCG--CG--------CGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCATTAAAATAACGGCAA-AAGCGGGGCGTGTTT--GC---CAGTAGAG-AAGCT----------C------CGG--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGGCG---------------------AAAAGCTCGA-G------GTGTCG------------------------------------AG---CGT---AGTAAACAAATCAAATACT-------G--ACACCGCGCTA--AGCCTCAATCAA---T--TCAAGAAGCGCTGCAATTAGCGATTTGATTAG------------------------------------------------------GAGAACTT-AA-----GAAA--C---ACCAGATCTCTAAAGT-----
droKik1 scf7180000302273:286397-286630 + CG---------------CGCGCG----------------------------ATTAA-TATT---GTTATTATTGTGTGCT---------TCGTTGTGACGCAG----TTAACGGTAA-AAGCGGGGCGTGTTG--TT---GG----------------------C------CGG--AAAAGCCGCCAAGTGGACGCACGGGCGA-CCAGGTGTAGGGATCGC-GAAC----------------AGCTAGGAAAACGCAA-G------GTGTCG------------------------------------AG-------------ATCAAATCAACGATT-------G--A----------------TTCG-------T--TAAAGAACCGAGCCAATTAGCAATTTAATTAG------------------------------------------------------TGGC------------------C---AGCAGCTCGCTTCAGTGTATT
droAna3 scaffold_12916:10919722-10919983 + CG---------------TGTGTG--AA--------TGTGTG----TGCACTAT--ATTTTTGTTATTATTATTGA--------------GCTG-ATGACGCGT----TCGTTGGCAT-AAGCGTTTCG--------------CCAGAG-AACGT----------G------CGG--ATAAA-------CT-------------AGCTGGTAGCT------GG-TAGCT-----GCTATCTGGTAGCTACATTAATTAAAAG------CAAACCAAAACCCAATCAAGGTGCAAATCAAACAACCATACTGGCCCCGCCATAGTAAACAAATCAATTACA-------A--------------------------------------GTTCGATTCGATT--CGATTTAATTTA------------------------------------------------------AGAA----------------------GCCCGATT-TCAGTGT-----
droBip1 scf7180000396572:579428-579669 + CT---------------TCCGCG--TG--------TGAGTGTG--TGCGCTAT--A-TTTT---GTTATTATTGA--------------GCTG-ATGACGCGT----TCGTTGGCAC-AAGCGTTTC--------GC---CAT---AG-AACCT----------A------CGG--ATAAAGC--CAGCTA------------G-CCAGCT-------------AGCT----AGCCA---GGCAGCTACATTAATTAAA-G------GAAACCAA-ACCCAATCAAGGTGCAAATCAAACAGCCATACTGG---CAC---AGTAAACAAATCAATTACA-------A------------------------------------------------GTTATT--------CGA---------------------------------------------TTTAATTTAAGAA----------------------GCGCGATT-TTAGTGT-----
dp5 4_group4:3446258-3446348 - TG---------------AGTGTG--TT--------TGTGTG----TGTATGAT----TATTGCTATTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--AC---CATTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_10:2474533-2474623 - TG---------------AGTGTG--TT--------TGTGTG----TGTATGAT----TATTGCTATTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--AC---CATTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004884:791027-791261 - CC---------------TGTATG--AA--------TGTGTGAGCGTACACGAT----TGTT---GTTATTATTG------------------TTGTGACGCAT----ATAA----------CGGGGCGTGTTT--GC---CGTTACAA-AT--TG-----AACGC------AGA--AAAAAGT-----TTG------------A-ACAATTCTC------AA-TTCCCAAAA-C--------------CA-AAAATTTA-G------TTG-------------------------------------------------------------------------------------------------------------------------------------TTTAATTGAAAAACCAAAGCGCTAATTGCAGAAAATATCGCTAATTAGACTATATTGAA-AA-TAGAAAAACAACTTTGGGCA--T---ATACAAGCCAAAGAAT-----
droVir3 scaffold_12723:5567828-5567914 + CG---------------TGTGCG--TTAGCTTGCAAGTGTA----TGTGCAGG----CGTT---TCTG----TGT--------------GAATTGTGACGCGT-----------TAA-AAGCGGGGCGTGTTC--GC---CATTAGAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:11150718-11150818 + TG---------------TGTGCG--TATGTTTGTGTGTG------AGTACGTA----G---GCACTTCTTTGTGT--GCGTGTATGAGTGAATTGTGACGC-----------GCTAA-AAGCGGGGCGTGTTT--GC---CATTAGAA-GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CG---------------CGCGCG--AT--------TGTGTG----TGTGCGAA----TATA---GTTATTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AATCGGGGCGTGTTT--GC---CATTAGAG-AATCTT------------------------------CAATCG------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGATA--TGTCTCTA-------T--CAAATAATCGCTTATGTTAGTAATTTAGATAA------------------------------------------------------TAGAATGACAA----GGACACACAGGACAAGATCTATAGAGA-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA----GGACACACAGGACAAGATCT............2513.00302100000000000000
................................................................................................................................................AGAG-AATCTT------------------------------CAATCG------------G-ACAG................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
...................................................................................................................................................G-AATCTT------------------------------CAATCG------------G-ACAGGT..............................................................................................................................................................................................................................................................................................................2012.00200200000000000000
..............................................................................................................................................................................................................................................................CTGAA-G------GTGTCG------------------------------------GG---CAT---TGT..............................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAA------------------------------------------------------TAGAATGACAA----GGACACAC........................2311.00100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACAA----GGACACACAGGACAAGATCT............2711.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATAA------------------------------------------------------TAGAATGACAA----GGAC............................1911.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAGATAA------------------------------------------------------TAGAATGACAA----GGAC............................2211.00101000000000000000
............................................................A---GTTATTATTGT--------------GCTGTGTGACGCAT----A.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................G-ACAGGTGTC------GA-TGACG---------------------GAAAG...................................................................................................................................................................................................................................................................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----GGACACACAGGACAAGATC.............2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGATAA------------------------------------------------------TAGAATGACAA----GGACA...........................2611.00101000000000000000
.....................................................................TATTGT--------------GCTGTGTGACGC............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
................................................................GTTATTATTGT--------------GCTGTGTGACGC............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAGATAA------------------------------------------------------TAGAATGACAA----GGAC............................2611.00100100000000000000
...............................................................................................................................................TAGAG-AATCTT------------------------------CAATCG------------G-ACAGGTGT............................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................................................................................................AAGCTGAA-G------GTGTCG------------------------------------GG---C......................................................................................................................................................................................................1811.00101000000000000000
..............................................................................................................................................................................................G------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGC..................................................................................................................................................................................................................................................................2411.00100100000000000000
.............................................................................................................................................................................................................................A-TGACG---------------------GAAAGCTGAA-G------GTGT..................................................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GGACACACAGGACAAGATC.............2011.00100100000000000000
......................................................................................................................................................ATCTT------------------------------CAATCG------------G-ACAGGTGTC------.....................................................................................................................................................................................................................................................................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGATAA------------------------------------------------------TAGAATGACAA----GGACACACA.......................2611.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGGACAAGATCTATAGAGA-----2511.00100100000000000000
................................................................................................................................................AGAG-AATCTT------------------------------CAATCG------------G-A...................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
CG---------------CGCGCG--AT--------TGTGTG----TGTGCGAA----TATT---GTTATTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AATCGGGGCGTGTTT--GC---CATTAGAG-AATCTT------------------------------CAATCG------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGCTA--TGTCTCTT-------T--CAAATAATCGCTTATGTTACTAATTTAGATAA------------------------------------------------------TAGAATGACAA----GGACACACAGGACAAGATCTATAGAGA-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------G...........................................................................................................................................................................................................2511.0010010
..............................................................................................................ACGGCAA-AATCGGGGCGTGTTT--GC---.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
................................................................................................................................................AGAG-AATCTT------------------------------CAATCG------------G-ACA.................................................................................................................................................................................................................................................................................................................2011.0010010
............................................................................................................................................................................................................................GA-TGACG---------------------GAAAGCTGAA-G------G.....................................................................................................................................................................................................................................................1911.0010100
......................................................................................................................................................ATCTT------------------------------CAATCG------------G-ACAGGTGT............................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................................A-TGACG---------------------GAAAGCTGAA-G------GT....................................................................................................................................................................................................................................................1911.0010001
......................................................................................................................................................ATCTT------------------------------CAATCG------------G-ACAGGTGTC------.....................................................................................................................................................................................................................................................................................................2111.0010010
..........................................................ATT---GTTATTATTGT--------------GCTGTGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...............................................................................................................CGGCAA-AATCGGGGCGTGTTT--..........................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................................................................................................................................................................CTTA--AAACCGTGCTA--TGT....................................................................................................................................................1811.0010010
.................................................................................................................................GTTT--GC---CATTAGAG-AATCTT------------------------------........................................................................................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGGACAAGATCT............1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGACAA----GGACACACA.......................1811.0010010
..................GCGCG--AT--------TGTGTG----TGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
dm3
CGCCG--------CGATTGTGTG--TG------TGTGTGTG----TGTGCGAA----AATT---GTTGTTATTGT--------------GCTGTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CATTAGAG-AAGCTT-----CGCTC------CGG--AAAAAGCAACAATTG------------G-ACAGGTGTC------GA-TGACG---------------------AAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------CTTA--AAACCGTGCTA--TGTCTCTA-------T--CAAATAATCGCTTATTTTAGTAATTTAGTTAA------------------------------------------------------TAGAATGACAA----GGACAAAC---ACTAGAT---GAGAGA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................................................................G--AAAAAGCAACAATTG------------G-ACAGT...............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................................................................CAACAATTG------------G-ACAGGTGTC------GA-TG................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.GCCG--------CGATTGTGTG--TG------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................GTGTTT--GC---CATTAGAG-AAGCTT-----.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................................AGCTT-----CGCTC------CGG--AAAAAGCA.........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AACAATTG------------G-ACAGGTGTC------GA-TGA...............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................CAGGTGTC------GA-TGACG---------------------AAAAGCTGA...............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGTGCGAA----AATT---GTTGTTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................AA-G------GTGTCG------------------------------------GG---CAT---TGTAAAC..........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................AA-AAGCGGGGCGTGTTT--GC---.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTGTC------GA-TGACG---------------------AAAAGCT.................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTGTC------GA-TGACG---------------------AAAAGCTGAA-G------GTG...................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGTGTGTG----TGTGCGAA----AATT---GTTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................TTATTGT--------------GCTGTGTGACGCAT----......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GCTGAA-G------GTGTCG------------------------------------GG---CAT---.................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTGTG----TGTGCGAA----AATT---GT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CG---------------C-CGCGCACG--------TGTGTG----TGTGAGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGTGTGTTT--GC---CATTAGAG-AAGTTT-----CGCTC------CGG--AAAAAGC--------------------G-ACAGGTGTC------GA-TGACG---------------------GAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT-ACATATTTA--AAACCGTGCTA--GGTCTCTG-------T--CAAAAAATCGCGTCAGTTAGTGAGTTATTTAA------------------------------------------------------TAGAATGACAA----GAACA--C---ACTAAATGTGTAGAGA-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................TT-----CGCTC------CGG--AAAAAGC--------------------G-ACAGGTGTC------G....................................................................................................................................................................................................................................................................................................2811.0011000000
.............................................................................................................................................ATTAGAG-AAGTTT-----CGCTC------CGG--C................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.................................................................................................................................................................................AAAAGC--------------------G-ACAGGTGTC------GA-TGACG---------------------GAAAG...................................................................................................................................................................................................................................................................2811.0010000100
....................................................................................................................................................................................AGC--------------------G-ACAGGTGTC------GA-TGACG---------------------GA......................................................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................................................................................................................................................................GCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAAC..........................................................................................................................................................................................2511.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGTTATTTAA------------------------------------------------------TAGAAT.........................................2011.0010000100
........................................G----TGTGAGAT----TATT---GTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
..............................................................................................................................................................................................................................................................CTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAAT......................................................................................................................................................................................2811.0010000100
droYak3
CGCCG------------CGCGCT--CT------TGTGTGTG----TGCGCGAT----TATT---GTTATTATTGT--------------GCTTTCTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--TC---CATTAGCGGAAGCTT-----TGCTC------CGT--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGACG--------------------GGAAAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGTAAACAAATCAAAAT------ATTA--AAACCGTGCTA--GGTACCTA-------T--CAAAAATTCGCGTCAGTTAGTGATTTAATTAA------------------------------------------------------TAGAATTACAA----GGACA--C---ATTAGATCTATAGAGA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................GAAAGCTGAA-G------GTGTCG------------------------------------GG---C......................................................................................................................................................................................................2012.00200200000000
...................................................................................................................................................................................................................................G--------------------GGAAAGCTGAA-G------GTGTCG------------------------------------GG---C......................................................................................................................................................................................................2212.00200200000000
.................................................................................................................................................................................................................GTGTC------GA-TGACG--------------------GGAAAGC..................................................................................................................................................................................................................................................................1911.00100100000000
.............................................................................................................................................................................................................................................................GCTGAA-G------GTGTCG------------------------------------GG---CAT---TGT..............................................................................................................................................................................................2111.00101000000000
..............................................................................................................................................................................................G------------G-ACAGGTGTC------GA-TGACG--------------------GGAAAG...................................................................................................................................................................................................................................................................2411.00100100000000
............................................................................................................................................................................GT--AAAAAGCGCCAATCG------------G-ACA.................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................CCTA-------T--CAAAAATTCGCGTCAGTTAGT................................................................................................................2611.00100000010000
................................................................................................GACGCAT----ATAACGGCAA-AAGCGGGGCGC................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...............................................................................................................................GTGTTT--TC---CATTAGCGGAAGCT.......................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGCGTCAGTTAGTG...............................................................................................................2011.00100000010000
.........................CT------TGTGTGTG----TGCGCGAT----TAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................GAAAGCTGAA-G------GTGTCG------------------------------------GG---.......................................................................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................GA-TGACG--------------------GGAAAGCTGAA-G------GTGTCG------------------------------------GG---C......................................................................................................................................................................................................2811.00100000010000
............................................................................................................................................................................................................................................................................................................................................AAAAT------ATTA--AAACCGTGCTA--GG.....................................................................................................................................................2211.00100000010000
...................................................................................................GCAT----ATAACGGCAA-AAGCGGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
....................GCT--CT------TGTGTGTG----TGCGCGAT----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
...................................................................ATTATTGT--------------GCTTTCTGACGC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
....................GCT--CT------TGTGTGTG----TGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..................................GTGTGTG----TGCGCGAT----TATT---GTTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000
...........................................................................................................ATAACGGCAA-AAGCGGGGCGT................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000
...............................................................................................................................................................................................................................................................................................................................................................................................AAATTCGCGTCAGTTAGTG...............................................................................................................1911.00100000010000
.................................................................................................................................................................................................................GTGTC------GA-TGACG--------------------GGAAAGCTGAA-G------GT....................................................................................................................................................................................................................................................2611.00100100000000
................................................................................................................................................................................AAAAAGCGCCAATCG------------G-ACAG................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................................................................................................................................................................................GCCAATCG------------G-ACAGGTGTC------GA-TGACG--------------------G........................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAA----GGACA--C---ATTAGATCT............2211.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAA----GGACA--C---ATTAGATCTATAGAG......2811.00100000010000
.............................................................................................................................................................................................................................................................................GTCG------------------------------------GG---CAT---TGTAAACAAATCAA...................................................................................................................................................................................2311.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAAATTCGCGTCAGTTAGT................................................................................................................1911.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAA----GGACA--C---ATTAGAT..............2011.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAA----GGACA--C---ATTAGATCTATAGAGA-----2911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................AACCGTGCTA--GGTACCTA-------T--CA...................................................................................................................................2111.00100000010000
...........................................................................................................................................................................................................................................................AAGCTGAA-G------GTGTCG------------------------------------GG---CAT---TGT..............................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................CGCGTCAGTTAGTGATTTAATTAA------------------------------------------------------TAGA...........................................2811.00100000010000
.....................................................................................................AT----ATAACGGCAA-AAGCGGGGCGT................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----GGACA--C---ATTAGATCTATAGAGA-----2511.00100000100000
................................................................................................................................................................................................................................................................GAA-G------GTGTCG------------------------------------GG---CAT---TGTAAAC..........................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................................................................................................................................................................................................................AT------ATTA--AAACCGTGCTA--GGTACCTA-------T--CAAA.................................................................................................................................3011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................A--AAACCGTGCTA--GGTACCTA-------C--.....................................................................................................................................2111.00100100000000
droEug1
CCCCC--------TG--AGTGCT--AT--------CGTGTG----TATGCCAT----AATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CTTTCAAG-AAGCTC-----CTCTC------CGA--AAAAAGCGCGAATCG------------G-ACAGGTGTC------GA-TAATG---------------------GAAAGCTCAA-G------GTGTTG------------------------------------CG---CGT---AGTAAACAAATCAAGGATT-------A--ATGCCGTCTTAAAGCTATCAA-------T--CAAAGCCGTGCGTTAATTAGCAATTTAATTAA------------------------------------------------------GAGAATGCCA------CATG--T---ACCGAATCGTTAGAGT-----SizeHit CountTotal NormTotal
No Reads
droBia1
CTCTAAGTGCGCCCGTGTGTGTG--TG------CGTGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTTTTGCCTTCGTTGGAG-AAGCTC-----AGCGTCTCGTGGGT--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GTTTGGCG---------------------GAAAGCTCGA-GCTGCCGCTGTCG------------------------------------GG---CGT---AGTAAACAAATCAGAGATT-------AGGGCGCCGTGCTG--GGCG-CAAACAACACTCCAAGAAAGACGGCTCAATTAGCAAATTAATCTA------------------------------------------------------GAGACT--------------------GCCGGATCCCTGGGGT-----SizeHit CountTotal NormTotal
No Reads
droTak1
CAG--------------TGGACGCCTG--------TGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--GC---CATTAGAG-A-GCTT-----CCCTC------GGG--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GC-GAATG---------------------AAAAGCTCAA-G------CTGTCG------------------------------------GT---CGTAGTAGTAAACAAATCGGAGATT----CATA--A--------------TCTCTG-------T--CCAAGAAGCGCGTCAATTAGCAATTTAATCAA------------------------------------------------------GATA------------------T---CCCGAATCCGTGGAGT-----SizeHit CountTotal NormTotal
No Reads
droEle1
CCTCC--------CACTTTTGCG--CG------CGTGTGTG----TACGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTGT--GC---CATTAGAG-AAGCTTCAAACCGCTC------CGTAAAAAAAGCGCCAATCG------------G-GCAGGTGTC------GT-TGA----------------------------------------------------------------------------------------------AGTAAACAAATCAAAGATT--------------------------TCCCA-------T--AAATGAAGCTCTTTAGTTAGCAATTTAATTAA------------------------------------------------------GAT-----------------------ACCAGATCTCGGGAGT-----SizeHit CountTotal NormTotal
No Reads
droRho1
CT---------------TTTGCG--CG------CGTGTGTG----TACGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAA-AAGCGGGGCGTGTTT--GC---CATTAGAG-AAGCTCCAATCCGCTC------CGGA-AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGA----------------------------------------------------------------------------------------------AGTAAACAAATCAAAGATT--------------------------TTCTG-------T--ACAAGTAGAGCTTTAGTTAGCAATTTAATTAA------------------------------------------------------GAT-----------------------ACCAGATCTCTGAAGT----TSizeHit CountTotal NormTotal
No Reads
droFic1
TG---------------TACGCG--CG--------CGTGTG----TGTGCGAT----TATT---GTTATTATTGT--------------GCTTTGTGACGCATTAAAATAACGGCAA-AAGCGGGGCGTGTTT--GC---CAGTAGAG-AAGCT----------C------CGG--AAAAAGCGCCAATCG------------G-ACAGGTGTC------GA-TGGCG---------------------AAAAGCTCGA-G------GTGTCG------------------------------------AG---CGT---AGTAAACAAATCAAATACT-------G--ACACCGCGCTA--AGCCTCAATCAA---T--TCAAGAAGCGCTGCAATTAGCGATTTGATTAG------------------------------------------------------GAGAACTT-AA-----GAAA--C---ACCAGATCTCTAAAGT-----SizeHit CountTotal NormTotal
No Reads
droKik1
CG---------------CGCGCG----------------------------ATTAA-TATT---GTTATTATTGTGTGCT---------TCGTTGTGACGCAG----TTAACGGTAA-AAGCGGGGCGTGTTG--TT---GG----------------------C------CGG--AAAAGCCGCCAAGTGGACGCACGGGCGA-CCAGGTGTAGGGATCGC-GAAC----------------AGCTAGGAAAACGCAA-G------GTGTCG------------------------------------AG-------------ATCAAATCAACGATT-------G--A----------------TTCG-------T--TAAAGAACCGAGCCAATTAGCAATTTAATTAG------------------------------------------------------TGGC------------------C---AGCAGCTCGCTTCAGTGTATTSizeHit CountTotal NormTotal
No Reads
droAna3
CG---------------TGTGTG--AA--------TGTGTG----TGCACTAT--ATTTTTGTTATTATTATTGA--------------GCTG-ATGACGCGT----TCGTTGGCAT-AAGCGTTTCG--------------CCAGAG-AACGT----------G------CGG--ATAAA-------CT-------------AGCTGGTAGCT------GG-TAGCT-----GCTATCTGGTAGCTACATTAATTAAAAG------CAAACCAAAACCCAATCAAGGTGCAAATCAAACAACCATACTGGCCCCGCCATAGTAAACAAATCAATTACA-------A--------------------------------------GTTCGATTCGATT--CGATTTAATTTA------------------------------------------------------AGAA----------------------GCCCGATT-TCAGTGT-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................TTCG--------------CCAGAG-AACGT----------G------CGG--.................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................GACGCGT----TCGTTGGCAT-AAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................G------CGG--ATAAA-------CT-------------AGCTGGTAGC............................................................................................................................................................................................................................................................................................................2111.001010000
....................................................................................................................................................................................................................................................................................................AATCAAACAACCATACTGGCCCCGC....................................................................................................................................................................................................2511.001010000
...........................................................................................TG-ATGACGCGT----TCGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................................................................AACGT----------G------CGG--ATAAA-------CT-------------AGCTGGT...............................................................................................................................................................................................................................................................................................................2311.001010000
..............................................................................................ATGACGCGT----TCGTTGGCAT-AAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.G---------------TGTGTG--AA--------TGTGTG----TGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.................................................................TTATTATTGA--------------GCTG-ATGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................AAA-------CT-------------AGCTGGTAGCT------GG-TAGCT-----........................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................................................TTCG--------------CCAGAG-AACGT----------G------CGG--ATAAA-------CT-------------......................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................ATCAAACAACCATACTGGCCCCGCCATAG...............................................................................................................................................................................................2911.001010000
..........................................................................................................................GTTTCG--------------CCAGAG-AACGT----------G------CGG--A................................................................................................................................................................................................................................................................................................................................................2211.001001000
droBip1
CT---------------TCCGCG--TG--------TGAGTGTG--TGCGCTAT--A-TTTT---GTTATTATTGA--------------GCTG-ATGACGCGT----TCGTTGGCAC-AAGCGTTTC--------GC---CAT---AG-AACCT----------A------CGG--ATAAAGC--CAGCTA------------G-CCAGCT-------------AGCT----AGCCA---GGCAGCTACATTAATTAAA-G------GAAACCAA-ACCCAATCAAGGTGCAAATCAAACAGCCATACTGG---CAC---AGTAAACAAATCAATTACA-------A------------------------------------------------GTTATT--------CGA---------------------------------------------TTTAATTTAAGAA----------------------GCGCGATT-TTAGTGT-----SizeHit CountTotal NormTotal
No Reads
dp5
TG---------------AGTGTG--TT--------TGTGTG----TGTATGAT----TATTGCTATTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--AC---CATTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................GGCAAAAAGCGGGGCGTGTTT--AC---.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.................................................................................................ACGCAT----ATAACGGCAAAAAGCGGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..........................................................................................CTTTGTGACGCAT----ATAACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
TG---------------AGTGTG--TT--------TGTGTG----TGTATGAT----TATTGCTATTATTATTGT--------------GCTTTGTGACGCAT----ATAACGGCAAAAAGCGGGGCGTGTTT--AC---CATTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CC---------------TGTATG--AA--------TGTGTGAGCGTACACGAT----TGTT---GTTATTATTG------------------TTGTGACGCAT----ATAA----------CGGGGCGTGTTT--GC---CGTTACAA-AT--TG-----AACGC------AGA--AAAAAGT-----TTG------------A-ACAATTCTC------AA-TTCCCAAAA-C--------------CA-AAAATTTA-G------TTG-------------------------------------------------------------------------------------------------------------------------------------TTTAATTGAAAAACCAAAGCGCTAATTGCAGAAAATATCGCTAATTAGACTATATTGAA-AA-TAGAAAAACAACTTTGGGCA--T---ATACAAGCCAAAGAAT-----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA-AA-TAGAAAAACAACTTTGGG.............................2411.00100010
...................................................................................................................................................A-AT--TG-----AACGC------AGA--AAAAAGT-----.....................................................................................................................................................................................................................................................................................................................................2011.00100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAAAATATCGCTAATTAGACT...........................................................2511.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAACCAAAGCGCTAATTGCA................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTGAAAAACCAAAGCGC........................................................................................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATATCGCTAATTAGACT...........................................................2111.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAAAAACCAAAGCGC........................................................................................1911.00100100
..........................................................GTT---GTTATTATTG------------------TTGTGACGC............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.............................................................................................TGTGACGCAT----ATAA----------CGGGGCGT................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................ATG--AA--------TGTGTGAGCGTACACGAT----T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACCAAAGCGCTAATT...................................................................................2011.00100010
................................................................................................................................................................................................................................................................TTA-G------TTG-------------------------------------------------------------------------------------------------------------------------------------TTTAATTGAAAAACCA..............................................................................................2311.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................AATTGAAAAACCAAAGCGCTAAT....................................................................................2311.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAACAACTTTGGGC............................1811.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGAAAAACCAAAGCGCT.......................................................................................2111.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAAAACCAAAGCGCTAAT....................................................................................2211.00100010
.C---------------TGTATG--AA--------TGTGTGAGCGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
CG---------------TGTGCG--TTAGCTTGCAAGTGTA----TGTGCAGG----CGTT---TCTG----TGT--------------GAATTGTGACGCGT-----------TAA-AAGCGGGGCGTGTTC--GC---CATTAGAA-AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................GACGCGT-----------TAA-AAGCGGGGC..................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................GT-----------TAA-AAGCGGGGCGTGTTC--GC---.....................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000100000000000000000000000
.G---------------TGTGCG--TTAGCTTGCAAGTGTA----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
TG---------------TGTGCG--TATGTTTGTGTGTG------AGTACGTA----G---GCACTTCTTTGTGT--GCGTGTATGAGTGAATTGTGACGC-----------GCTAA-AAGCGGGGCGTGTTT--GC---CATTAGAA-GA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................AGTACGTA----G---GCACTTCTTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................GTGAATTGTGACGC-----------GCTAA-AAGCGG.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000

Generated: 05/18/2015 at 11:40 AM