ID:

dsi_23791

 Coordinate:

3l:11461865-11462014 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.7 -11.6 -11.4 -11.4

Flybase annnotation

exon [3l_11462015_11462349_-]; five_prime_UTR [3l_11462015_11462349_-]; intron [3l_11456160_11462014_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGACAGCTGTTAACTCTAGCTGTTAGCTTTCGGCGGCGAGTGCTCGAAGGTAAAAGTTTAAGGCGAGACGCCAAAATATTCGCTATTAAACACAAACGAGTCACAGTCGCAGTTGAAACGTTGAGTGAGGAGCTTTTCGTCGCGCTGTGCAACACCCGCAATTGTGTAAAATATACTATCGAAAATGAAACTTATTATTCAATTTGTATGCTAAAAAGCTGATTTGCTAAATTGCCCGCTGGATATTTC
******************************************************..((.....((..((((....((((((((..............)))))..........)))....))))..)).....))******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................TGAAACGTTGAGTGAGGAGC.................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................GTTGAAACGTTGAGTGAGGAGCT................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................AAACGTTGAGTGAGGAGCT................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................AAGTTTAAGGCGAGACGC.................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................GGAGCTTTTCGTCGCGCTGT..................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................GAAACGTTGAGTGAGGAGCTT.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................GAAACGTTGAGTGAGGAGC.................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................GAGCTTTTCGTCGCGCTTTGCAACACC............................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................CTTTTCGTCGCGCTGTGC................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................AACGTTGAGTGAGGAGCTTT................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................GCTTTTCGTCGCGCTGTGCAA................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................GAGCTTTTCGTCGCGCTGTG.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................AGCTGTTATCTCTCGGCGGC.................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0
...............TCTAGTTGTTAGCTCGCGG........................................................................................................................................................................................................................ 19 3 6 0.17 1 0 1 0 0 0 0 0 0
.......................................AGTGCTCGAAGTTAA.................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0
.....AGCTGTTAACTCTAA...................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0 0
........................................GTGCTCGAATGTCAAAG................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1 0
.........................................................................................................................TTGAATGAAGAGCTTTT................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1
.......CTGTTAACTCTGGGTG................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

GACTGTCGACAATTGAGATCGACAATCGAAAGCCGCCGCTCACGAGCTTCCATTTTCAAATTCCGCTCTGCGGTTTTATAAGCGATAATTTGTGTTTGCTCAGTGTCAGCGTCAACTTTGCAACTCACTCCTCGAAAAGCAGCGCGACACGTTGTGGGCGTTAACACATTTTATATGATAGCTTTTACTTTGAATAATAAGTTAAACATACGATTTTTCGACTAAACGATTTAACGGGCGACCTATAAAG
********************************************************************************************************************..((.....((..((((....((((((((..............)))))..........)))....))))..)).....))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................AAGGGATAATTGGTGTTTG........................................................................................................................................................ 19 2 6 0.17 1 1 0 0 0
................................................................................AGCGATAATTTGTAGTTCCT...................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0
..............................................................GCGCTCTGCGGTTTT............................................................................................................................................................................. 15 1 10 0.10 1 0 0 1 0
................................................................................AGGGATAATTGGTGTTTG........................................................................................................................................................ 18 2 11 0.09 1 1 0 0 0
.......................................................................................................................................AAAGCTGCGCGACCCGATG................................................................................................ 19 3 12 0.08 1 0 0 0 1
...............................................................................AAGGGATAATTGGTGTTT......................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 08:30 AM