ID:

dsi_23747

 Coordinate:

3r:4413273-4413458 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.9 -32.6 -32.2 -32.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCGGCACCAGATTATAAGTTCCTCTTGCAGTAGGAGTTAGTCATCGGGATGTGAGTATATATATGCACATAGAGCGCCAGTGGCATCTTGTTCCCGATCCGGCTTCGTCGGCCCCTCCCTTCTTCGGTGTTTTGTGACTTGTTATCTGGGCCACGAATCGGAAGCGGAGCCCCTGCAACTGAAAACCTGCCCCGACTACTCACACTCGTCATGGTGTTTATCTATCTACCCAGCAGATAAGGACAAGCGAGTAACCAGCGACCAGAAACCGGTAAACAGAATGTGG
*******************************************************************..............((......(((.(((.(((((.(((((.(((((.........(((........)))..........)))))))))))))))..))))))))****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
.............................................................................................................................................................................................................................CTATCTACCCAGCAGATAAGGACAAGC...................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................CGAATCGGAAGCGGAGCCC.................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................CATAGAGCGCCAGTGGCATC....................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TATAAGGACAAGCGAGTAACCAGC........................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CTACCCAGCAGATAAGGAC.......................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................AGTAACCAGCGACCAGAAACC................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GAATCGGAAGCGGGGCTC.................................................................................................................. 18 2 15 0.67 10 0 0 6 4 0 0 0 0
.........................................................................................GTTCCCGGTCCGGCGTCGTCGT............................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
....................................TTAGTCGTCGGCATGTGA........................................................................................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0 0 0
......................................................................................................................................................CCATGAATCGGAAGCGG....................................................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................TCCCGGTCCGGCGTCGTCG................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................TATTCCCGATCCGGCATC.................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0 0 0 0
............................................................................................CCCGGTCCGGCGTCGTCG................................................................................................................................................................................ 18 2 5 0.20 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................TGAATCGGAAGCGGGG..................................................................................................................... 16 2 20 0.15 3 0 0 3 0 0 0 0 0
.........................................................................................................................................................TGAATCGGAAGCGGGGC.................................................................................................................... 17 2 20 0.15 3 0 0 2 1 0 0 0 0
............................................................................................CCCGGTCCGGCGTCGTC................................................................................................................................................................................. 17 2 9 0.11 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................GAATCGGAAGCGGGG..................................................................................................................... 15 1 20 0.10 2 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................................ATACGGACAATCAAGTAAC............................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0
........................................TTATCGGGATGGCAGTATA................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 0 1
...........................CAGTAGGTGTTAGTTA................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0
..........................................ATTGGGATGAGAGTAT.................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

CGCCGTGGTCTAATATTCAAGGAGAACGTCATCCTCAATCAGTAGCCCTACACTCATATATATACGTGTATCTCGCGGTCACCGTAGAACAAGGGCTAGGCCGAAGCAGCCGGGGAGGGAAGAAGCCACAAAACACTGAACAATAGACCCGGTGCTTAGCCTTCGCCTCGGGGACGTTGACTTTTGGACGGGGCTGATGAGTGTGAGCAGTACCACAAATAGATAGATGGGTCGTCTATTCCTGTTCGCTCATTGGTCGCTGGTCTTTGGCCATTTGTCTTACACC
******************************************************************************************************************..............((......(((.(((.(((((.(((((.(((((.........(((........)))..........)))))))))))))))..))))))))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................................TTGAAGTTTCGACGGGGCTG.......................................................................................... 20 3 7 0.29 2 2 0 0 0 0
............................................................................................................................................................................................................................................................TTGGTCGCTGGTATTT.................. 16 1 4 0.25 1 0 1 0 0 0
................................................................................................TAGGCCGAGGGAGCCGGGGC.......................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0
..........................................................................................................................................................................................GACGGGGCTGATACGTGGG................................................................................. 19 3 14 0.07 1 0 0 1 0 0
......................................................................................................................................................................................................................................................CGCTCTCTGGTCGCTGG....................... 17 2 17 0.06 1 0 0 0 0 1
......................................................................................................................................................................................TCTGGACGTCGCTGATGAG..................................................................................... 19 3 18 0.06 1 0 0 1 0 0
........................................................................................................................................................................................................................................................CTCCTTGCTCGCTGGT...................... 16 2 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................................................................................................................TGGCCATTTGACTTGC... 16 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 06:30 AM