ID:

dsi_23723

 Coordinate:

2r:6250572-6250721 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.7 -16.6

Flybase annnotation

CDS [2r_6250722_6250826_-]; exon [2r_6250722_6251017_-]; intron [2r_6249019_6250721_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCCCCCCAAGTTATTCTACCAAAGTTTCCATGAACCATTTCCAATTCATTTTGTCAACAATAACAACAACATTTTGAAGGGGTTGGGGGGTTTAGTGTTGCCAAACCGACAACATATCGCACCTGGCCAACCAGAGTTGCCAATTGTTCGCACTCACGAATGGGCTATTGCCATTTCACTCGCTCGTGCATTTT
************************************************************************..............((((((..(((((((((......((((................))))..))))))))))))))).....((((...(((.......)))....))))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................AACATCGACATTTTGAACGG................................................................................................................. 20 3 13 1.69 22 0 4 4 14 0 0 0 0 0
......TGAACAAGCGAAATTTTAATG............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..CACGTGAACAAGCGAAATTTTAATGA.............................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................AGGTAGGTGCCCCCCAAGTTA..................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........AAGCGAAATTTTGATGAGAGC.......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................TACCAAAGTTTCCATGA................................................................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CAACATATCGCACCTGGC................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................GACGGGGTTGGGGGG........................................................................................................ 15 1 17 0.82 14 6 0 0 0 0 0 0 8 0
....................................................................................................................GAACATCGACATTTTGAAGG.................................................................................................................. 20 3 13 0.08 1 0 0 0 0 1 0 0 0 0
.......................................................................CTACCAAAGTTTCGAAG.................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................ACAACATTCTGAAAGGG................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
..........................................CAACTCATGTAGGTGC................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGTGCACTTGTTCGCTTTAAAATTACTCTCGTCGCTCGTTTATTGAGTCCATCCACGGGGGGTTCAATAAGATGGTTTCAAAGGTACTTGGTAAAGGTTAAGTAAAACAGTTGTTATTGTTGTTGTAAAACTTCCCCAACCCCCCAAATCACAACGGTTTGGCTGTTGTATAGCGTGGACCGGTTGGTCTCAACGGTTAACAAGCGTGAGTGCTTACCCGATAACGGTAAAGTGAGCGAGCACGTAAAA
*******************************************************************..............((((((..(((((((((......((((................))))..))))))))))))))).....((((...(((.......)))....))))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR902008
ovaries
 GSM343915
embryo
.....................................................CCACGGGGGGTTCAATAAGATG............................................................................................................................................................................... 22 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................CCAAACCACAAGGTTTTGGCT..................................................................................... 21 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..................................................................................AGGTACTTGGTAAAGGTTAA.................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................TCCACGGGGGGTTCAATAAGATG............................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTAAAGGTTAAGTAAAACAGT.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................ACTTGGTAAAGGTTAAGTAAA............................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TACCCGATAACGGTAAAGTGAGCGAGCAC...... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................TGGTCTCAACGGTTAACAAGC............................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................AAGGTACTTGGTAAAGGTTAA.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................AAGATGGTTTCAAAGGTACT................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
........................................................CGGGGGGTTCAATAAGATGGTTTCAAAG...................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................AAACGGTTTGGCTGTTGTAT.............................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................CACGGGGGGTTCAATAAGATG............................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................AAAGGTACTTGGTAAAGGTTA..................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CTCGAAAACGGTGAAGTGAGCG........... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................GGGGTTCAATAAGATGGTTTC.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TGGACTGTTGTATAGCG.......................................................................... 17 2 5 1.00 5 0 0 0 4 1 0 0 0 0 0 0
...............................................................................................................................................................TTGGCTGTTGTATAGCGTGGA...................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................GGGGGGTTCAATAAGATGGTT............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................GGGGGGTTCAATAAGATG............................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................ACTGTTGTATAGCGT......................................................................... 15 1 14 0.64 9 0 0 0 7 0 2 0 0 0 0 0
............................................................................................................................................................................AGCTTGGATCTGTTGGTCTC.......................................................... 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGAGAACGGTAAAGCGAGC............ 20 2 6 0.33 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGATAACGGCGAAGTGAG............. 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................GGACTGTTGTATAGCGT......................................................................... 17 2 16 0.31 5 0 0 0 4 1 0 0 0 0 0 0
...............................................................................................................................................................TGGACTGTTGTATAGCGTA........................................................................ 19 3 20 0.25 5 0 0 2 0 0 1 1 1 0 0 0
.................................................................................................................................................................GACTGTTGTATAGCG.......................................................................... 15 1 9 0.22 2 0 0 0 1 0 1 0 0 0 0 0
.................................................................................................................................................................GACTGTTGTATAGCGT......................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCGAGAAGGGTAAAGCGAGCG........... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................CTGGACTGTTGTATAGCG.......................................................................... 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................AAAAAAATTGTTATGGTTGTTG............................................................................................................................ 22 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................CTGTTGTATAGCGTA........................................................................ 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TGGAGCGGTTTGTCGCAAC....................................................... 19 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................TGGCCTGTTGTATAGC........................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TGGTCAAGGCTAAGTAA................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6250522-6250771 - dsi_23723 AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCCC--CCCAAGTTATTCTACCAA----------------------AGTTT-----------------------------CCATGAAC------------------------------CATT---TCCAATTC-------ATTTTGTCAACAATAACAACAACAT-------TTTGAAGGGGTT-----------------------------G---------------------------GG-GG--------GTT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTT
droSec2 scaffold_1:3080134-3080384 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCCC--CCCAAGTTATTCTACCAA----------------------AGTTT-----------------------------CCATGAAC------------------------------CTTT---TCCAATTC-------ATTTTGTCAACAATAACAACAAAAT-------TTTGAAGGGGGG--------------------------------------------------TG-----GG-GG--------GTT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTT
dm3 chr2R:5465494-5465739 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAATCAGGTAGGTGCCC--------------------AA-------GTTATTCTACCAAAGTTT-----------------------------CCATGAAC------------------------------CATT---TCCAATTC-------ATTTTGTCAACAATAACAACAACAT-------TTTGTAGGGGGC-----------------------------G---------------------------GGG---------G-TT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTT
droEre2 scaffold_4929:8890814-8891073 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGGGTGCCCC-------------------AA-------GTTATTCTACTAACGTTT-----------------------------CCATGAAC------------------------------CATT---TTCAATTT-------ATTTTGTCAACAATAACAACAACA-------------AGGTGGT-----------------------------G---------------------------GGG---------G--G----TAGTGTTGC---------------------CAAATCGAA---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTAGAGCATTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTT
droYak3 2L:18096967-18097215 - AGCACGTGAGCAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGGGTGCCC--------------------AA-------TTTATTCTACTA-TGTTT-----------------------------CCACGAAC------------------------------CATT---TCCAATCC-------ATTTTGTCAACAATAACAACAACT-------------AGGTGGT-----------------------------G---------------------------GGG---------G--T----TAGAGTTGC---------------------CAAACCGAA---AAC--ATATCGCACCTGG-----------CCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTA-----TTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTT
droEug1 scf7180000409209:699622-699874 + AGCACGTGAATAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTTCC---------------------A-------AATA----------TTTT-----------------------------CCATGAA----------------------------------------CATTT-----TCATTTTTGTCAACAATAACAACAACA-------------ATGGGAC-----------------------------T---------------------------GGGAGCCAAAATG--A----TAGTGTTGC---------------------CAAATTATA---AAC--ATATCGGACCTGGG---TTCATAACCAGAGTTGCCAA-TTG-TTC--GCAATTCACTCACGACTTCG----------GAGA-AGAGCACACTATTGCCATTTCACTCGCTCGTGCATTTT
droBia1 scf7180000301506:1254933-1255195 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTGCTTC-------------------GAA------ATAACTTT-----TCTTT----------T--TC--CCACTGAA----------------------------------AAAATGTTCAT-GAG--CAGTCC------ATTTTTGTCAACAATAACAACAATA-------------AGGGGGC-----------------------------A---------------------------GGG---------G--C----TAGTGTTGC---------------------CAAATCGCC---GAC--ATATCGCACCTGGT---TGCCCGGCCGGGGTTGCCAA-TTGTTTTGCGC-----ACTCACGACTG------------GCCG-AGGG--AACTATTGCCATTTCACTCGCTCGTGCATTTT
droTak1 scf7180000415401:528645-528893 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTATT--G-----------C---TAAATCGAACTT-------------------------TTCCC--CCACTAGAT---------------------------------------TTCAT-GAA--CAATCC------GTTTTTGTCAACAATAACAACAACA-------------AGGTGAC-----------------------------A---------------------------GGG------------C----TAGTGTTGC---------------------CAATCCGAA---AAC--ATATCGCACCTGGT---------GCCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGACTG------------GCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTT
droEle1 scf7180000491107:1646536-1646773 + AGCACGTGAACAAGCGAAATTTTAATGAAAGCAGCGAGCAAATAAAACAGGTGAGTTGGAGT---------------------------T-T-------------------------TTGCC--CCAGTAAA----------------------------------------TTGAT-GAA--CAATTC------GTTTTTGTCAACCATAACAACAACA-------------AGGTGAC-----------------------------A---------------------------GGG------------G----TAGTGTTGC---------------------CAAACTGAA---AAC--ATATCGCACCTGGC-------AAGCCAGAGTTGCCAA-TTG-TAC--GC-----ACTCACGACTG------------GCCC-CGAG--CACTAGTGCCATTTCACTCACTCGTGCATTTT
droRho1 scf7180000777217:352955-353192 - AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGAGTTGGAGT---------------------------T-T-------------------------TTGCC--CCAGTAAA----------------------------------------TTCAT-GAA--CATTTC------GTTTTTGTCAACAATAACAACTACA-------------AGGTGAC-----------------------------A---------------------------GGG------------G----TAGTGTTGG---------------------AAAACCGTA---AAC--ATATCGCACCTGGC-------CAGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------GCCC-CGAA--CACTATTGCCATTTCACTCGCTCGTGCATTTT
droFic1 scf7180000453858:1245404-1245639 + AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTTAC-------------------A-------GTTTT---------------------------C--CCAGCAA-T---------------------------------------TTCAT-GAT--CAATCC------ATTTTTGTCAACAATAACAACAACA-------------AGGTGAT-----------------------------G---------------------------AG-------------G----TAGTGCTGC---------------------CAATTCGTA---ATA--ATATCGCACCTGGT-------CGGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------CCCG-AGT---AACTATTGCCATTTCACTCGCTCGTGCATTTT
droKik1 scf7180000302476:854566-854838 - AGCACGTGAATAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAAGCAGGTGAGTTTGGCT-------------------A-------ATTGT---------------------------CCGCCAGCGAAT---------------------------------------TGGAC-AAG--CAAATTGTTTTTGACTCTGTCAACAATAACAACAATAG-------TGTCAGAGGGTG-----------------------------A--------------CGAC--TG-----CG-GG--------GTTCGAATGGTGTTGC---------------------CAAACCGTG---TGCATATATCGCACCTGGC---TGCCCTGCCAGTGTTGCCAA-TTG-TCC--AC-----ACTCACGACCG------------TCTGCGGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTT
droAna3 scaffold_13266:158192-158490 + AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTCC--------------------TA-------TATA--CA-----TAT-A-CATATATGTG--TCCCCCA--AA-GTTCTC--GAAT------------------------------AATT---TTT----T------GTTTTTCTTAACGAAAACAACAACA-------------AAGTGTCCTAGACGAAGAGGGGGGGATGGGGAGGGCATGAGGAAGT-----------TGTGGCTGTG---------A-TA----AAGGGTTGC---------------------CAAACTGGCACACAT--ATATCGCACCTGGC-------C-GCCAGGGTTGCCAA-TTG-GCT--GC-----GCTCACGACCCGT---------------------CACTATTGCCATTTCACTCGCTCGTGCATTTT
droBip1 scf7180000396730:1180301-1180572 + AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTCA---------------------A-------TATATACA-----TATTT---------------CACCA--AA-GTTCTC--GA------------------------------------AAA--AATTTT------GTTTTTGTCAACGAAAACAACAACA-------------AAGTGTCC---ATGAAGAGG-------------GGCATGAGGAAGT-----------TGTGGCAGTG---------C-TA----AAGGGTTGC---------------------CAAACTGGCACACAT--ATATCGCACCTGGC-------C-GCCAGAGTTGCCAA-TTG-GCT--GG-----GCTCACGACCCGT---------------------CACTGTTGCCATTTCACTCACTCGTGCATTTT
dp5 3:15906591-15906771 - AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCAG---------------------A-------TTTATTCA-----TATTTT--------T--------------------CTCGCCTCAATACCAATTTTGGG-TAGAAAGA---------AAA-------C-------AATTTGTCAACAAAAACAACAAGAAAAACCGATTT---------------------------------------------------------------------------------C----AAGTGTTGCGAAGGTTAGCACCAGTGCTGCCAGA-------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:855203-855384 + AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCAG---------------------A-------TTTATTCA-----TGTTTT--------T--------------------CTCGCCTCAATACCAATTTTGGGATAGAAAGA---------AAA-------C-------AATTTGTCAACAAAAACAACAAGAAAAACCGATTT---------------------------------------------------------------------------------C----AAGTGTTGCGAAGGTTAGCACCAGTGATGCCAGA-------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004513:3331705-3331818 - AATACGTGAACAAGCGAAATTTTAATGAAACCAACGAAAGTATAAAGCAGGTATGTCATC--TCTCCGTGACCCAAAAAC----------------------AAAAA-----------------------------AAAAGACC------------------------------CAGC---TCCAACGT-------GTTTTATTAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:264875-265130 - dvi_704 AACACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTATGTTTCAC--------------------A-------TTTAACCT-----TGTTT-----------------------------TTAAAATA------------------------------CAT-A--ACCAAATA-------ATAATAACAACAACA---ACAACA-------------GAATATC-----------------------------A----GCAATTCCAATAGCAATGAAA-------CTACA----AT----GAGTGTTGA---------------------CAAATTTTG---CAC--ATATCGGCATAAGC-C-AACACACACAGTGCTGCCAACTTA-ATA--GC-----ACA------GCGG---------------------CTATATTGCCATTTCGCTCGCACATGCATTTT
droMoj3 scaffold_6496:2079152-2079405 - AACACGTGAATAAACGAAATTTTAATGAGAGCAACGAACAAATAAAGCAGGTACGTTTCAC--------------------A-------TTTAACCT-----TGTTT-----------------------------TTAAAATA------------------------------CAT-A--ACCAAATA-------ATTGAA---ACAATAACAACAACAACA----------AG----------------------------------------CAATTGCAATAGCAATAAAA-------ATACA----AT----AAGTGTTGT---------------------CAAATTTTG---CAC--ATATCGGCTGTGAGTCAAACACAGGCAGAGCTGCCAACTTA-ATC--GC-----ACA------ACGG---------------------CTATATTGCCATTTCGCTCGCACATGCATTTT
droGri2 scaffold_15245:15359384-15359635 + AACACGTGAACAAACGAAATTTTAATGAGAACAGCGAGCAAATAAAGCAGGTACGTTTTAAC-------------------A-------TTTAACCT-----TGTTT---------------------TAA----------A------------------------------TACAT-AAC--CAAATA-------GTAATAACACCAACAACAACAAAA---------------ATAGC-----------------------------A----GCAATTGCAATAGCATTGAAACAGTA---------A-AC----GAGTGTTGG---------------------CAAAGTGTG---CAC--ATATCGTGAGTGGT---------GTCAGTGCTGCCAACTTA-ATC--GC-----ACACA----GCGG---------------------CTATATTGCCATTTCGCTCACACATGCATTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCCC--CCCAAGTTATTCTACCAA----------------------AGTTT-----------------------------CCATGAAC------------------------------CATT---TCCAATTC-------ATTTTGTCAACAATAACAACAACAT-------TTTGAAGGGGTT-----------------------------G---------------------------GG-GG--------GTT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......TGAACAAGCGAAATTTTAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..CACGTGAACAAGCGAAATTTTAATGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................AGGTAGGTGCCC--CCCAAGTTA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..........................................................................TACCAA----------------------AGTTT-----------------------------CCATGA......................................................................................................................................................................................................................................................................................................................................................1711.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................C---AAC--ATATCGCACCTGGC-------...................................................................................................1811.00100100000000000000
droSec2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAACTCAGGTAGGTGCCC--CCCAAGTTATTCTACCAA----------------------AGTTT-----------------------------CCATGAAC------------------------------CTTT---TCCAATTC-------ATTTTGTCAACAATAACAACAAAAT-------TTTGAAGGGGGG--------------------------------------------------TG-----GG-GG--------GTT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................ATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................AATTTTAATGAGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................TTAATGAGAGCAGCGAGCAAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
..................ATTTTAATGAGAGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................CAAATAACTCAGGTAGGTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..CACGTGAACAAGCGAAATTTTAATGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
dm3
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAATCAGGTAGGTGCCC--------------------AA-------GTTATTCTACCAAAGTTT-----------------------------CCATGAAC------------------------------CATT---TCCAATTC-------ATTTTGTCAACAATAACAACAACAT-------TTTGTAGGGGGC-----------------------------G---------------------------GGG---------G-TT----TAGTGTTGC---------------------CAAACCGAC---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................TAATGAGAGCAGCGAGCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATGAGAGCAGCGAGCAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000
...........AAGCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000010
.........................TGAGAGCAGCGAGCAAATAAATCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGAGCAGCGAGCAAATAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000010000000000000000000000000000000000
.................AATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
...............GAAATTTTAATGAGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGTTGCCAA-TTG-TTC--GC-----..................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AA-------GTTATTCTACCAAAGTTT-----------------------------C...........................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTAATGAGAGCAGCGAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................G-TTC--GC-----ACTCACGAATGGG-----------------------CT............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................TTTTAATGAGAGCAGCGAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100
................AAATTTTAATGAGAGCAGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................AATGAGAGCAGCGAGCAAATAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTTCACTCGCTCGTGC.....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAATGGG-----------------------CTATTGCCATTTCACTCGCT..........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AATTTTAATGAGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAAATTTTAATGAGAGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCAGCGAGCAAATAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGAGCAGCGAGCAAATAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................TTGTCAACAATAACAACAAC.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AACAAGCGAAATTTTAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........CAAGCGAAATTTTAATGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGAACAAGCGAAATTTTAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................AACAACAACAT-------TTTGTAGGG.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CAACAACAT-------TTTGTAGGGG......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................G---------------------------GGG---------G-TT----TAGTGTTGC---------------------CAAACCGAC---.............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................ATGAGAGCAGCGAGCAAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................A-TTG-TTC--GC-----ACTCACGAATGGG-----------------------CTA...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GCAGCGAGCAAATAAATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................AATTTTAATGAGAGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................ATGAGAGCAGCGAGCAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............AGCGAAATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CGAGCAAATAAATCAGGTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................G---------G-TT----TAGTGTTGC---------------------CAAACCGAC---.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GC-----ACTCACGAATGGG-----------------------CTATTG........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................CAAATAAATCAGGTAGGTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................TATCGCACCTGGC-------CAACCAGA...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGCAGCGAGCAAATAAATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................................GCGAGCAAATAAATCAGGTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCAA-TTG-TTC--GC-----ACTCACTT..........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GCAAATAAATCAGGTAGGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AACCAGAGTTGCCAA-TTG-TTC--G........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................AATGAGAGCAGCGAGCAAATAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GC-------CAACCAGAGTTGCCAA-TTG-T.............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CAAACCGAC---AAC--ATATCGCAC...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAAATTTTAATGAGAGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATTTCACTCGCTCGTGCATTTT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AATGAGAGCAGCGAGCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTTTAATGAGAGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AGAGCAGCGAGCAAATAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........AACAAGCGAAATTTTAATGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................AATTTTAATGAGAGCAGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...ACGTGAACAAGCGAAATTTTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGCGAAATTTTAATGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AAATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ATGAGAGCAGCGAGCAAATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TACCAAAGTTT-----------------------------CCATGAAC------------------------------C.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............GCGAAATTTTAATGAGAGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCAAATAAATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................CAGCGAGCAAATAAATCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGGGTGCCCC-------------------AA-------GTTATTCTACTAACGTTT-----------------------------CCATGAAC------------------------------CATT---TTCAATTT-------ATTTTGTCAACAATAACAACAACA-------------AGGTGGT-----------------------------G---------------------------GGG---------G--G----TAGTGTTGC---------------------CAAATCGAA---AAC--ATATCGCACCTGGC-------CAACCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTAGAGCATTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................AATTTTAATGAGAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........AAGCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............GAAATTTTAATGAGAGCAGCGAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.................AATTTTAATGAGAGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...................TTTTAATGAGAGCAGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.................AATTTTAATGAGAGCAGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................ATTTTAATGAGAGCAGCGAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......GAACAAGCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................................AACAAATAAAGCAGGTGGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........ACAAGCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
droYak3
AGCACGTGAGCAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGGGTGCCC--------------------AA-------TTTATTCTACTA-TGTTT-----------------------------CCACGAAC------------------------------CATT---TCCAATCC-------ATTTTGTCAACAATAACAACAACT-------------AGGTGGT-----------------------------G---------------------------GGG---------G--T----TAGAGTTGC---------------------CAAACCGAA---AAC--ATATCGCACCTGG-----------CCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGAGTTGGCTA-----TTGCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................GAGAGCAGCGAGCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................T-----------------------------CCACGAAC------------------------------CATT---TCCAATCC-------ATTTTGTC........................................................................................................................................................................................................................................................................................2911.00101000000000
.............GCGAAATTTTAATGAGAGCAGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................ATTTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................TTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................AATTTTAATGAGAGCAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................ATGAGAGCAGCGAGCAAATAAAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................GGT-----------------------------G---------------------------GGG---------G--T----TAGAGTTGC---------------------.........................................................................................................................................1811.00101000000000
.......................AATGAGAGCAGCGAGCAAATAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
AGCACGTGAATAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTTCC---------------------A-------AATA----------TTTT-----------------------------CCATGAA----------------------------------------CATTT-----TCATTTTTGTCAACAATAACAACAACA-------------ATGGGAC-----------------------------T---------------------------GGGAGCCAAAATG--A----TAGTGTTGC---------------------CAAATTATA---AAC--ATATCGGACCTGGG---TTCATAACCAGAGTTGCCAA-TTG-TTC--GCAATTCACTCACGACTTCG----------GAGA-AGAGCACACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTGCTTC-------------------GAA------ATAACTTT-----TCTTT----------T--TC--CCACTGAA----------------------------------AAAATGTTCAT-GAG--CAGTCC------ATTTTTGTCAACAATAACAACAATA-------------AGGGGGC-----------------------------A---------------------------GGG---------G--C----TAGTGTTGC---------------------CAAATCGCC---GAC--ATATCGCACCTGGT---TGCCCGGCCGGGGTTGCCAA-TTGTTTTGCGC-----ACTCACGACTG------------GCCG-AGGG--AACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTATT--G-----------C---TAAATCGAACTT-------------------------TTCCC--CCACTAGAT---------------------------------------TTCAT-GAA--CAATCC------GTTTTTGTCAACAATAACAACAACA-------------AGGTGAC-----------------------------A---------------------------GGG------------C----TAGTGTTGC---------------------CAATCCGAA---AAC--ATATCGCACCTGGT---------GCCAGAGTTGCCAA-TTG-TTC--GC-----ACTCACGACTG------------GCCG-AGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCACGTGAACAAGCGAAATTTTAATGAAAGCAGCGAGCAAATAAAACAGGTGAGTTGGAGT---------------------------T-T-------------------------TTGCC--CCAGTAAA----------------------------------------TTGAT-GAA--CAATTC------GTTTTTGTCAACCATAACAACAACA-------------AGGTGAC-----------------------------A---------------------------GGG------------G----TAGTGTTGC---------------------CAAACTGAA---AAC--ATATCGCACCTGGC-------AAGCCAGAGTTGCCAA-TTG-TAC--GC-----ACTCACGACTG------------GCCC-CGAG--CACTAGTGCCATTTCACTCACTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAACAAATAAAGCAGGTGAGTTGGAGT---------------------------T-T-------------------------TTGCC--CCAGTAAA----------------------------------------TTCAT-GAA--CATTTC------GTTTTTGTCAACAATAACAACTACA-------------AGGTGAC-----------------------------A---------------------------GGG------------G----TAGTGTTGG---------------------AAAACCGTA---AAC--ATATCGCACCTGGC-------CAGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------GCCC-CGAA--CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTGAGTTGTTAC-------------------A-------GTTTT---------------------------C--CCAGCAA-T---------------------------------------TTCAT-GAT--CAATCC------ATTTTTGTCAACAATAACAACAACA-------------AGGTGAT-----------------------------G---------------------------AG-------------G----TAGTGCTGC---------------------CAATTCGTA---ATA--ATATCGCACCTGGT-------CGGCCAGAGTTGCCAA-TTG-TTT--GC-----ACTCACGACTG------------CCCG-AGT---AACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCACGTGAATAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAAGCAGGTGAGTTTGGCT-------------------A-------ATTGT---------------------------CCGCCAGCGAAT---------------------------------------TGGAC-AAG--CAAATTGTTTTTGACTCTGTCAACAATAACAACAATAG-------TGTCAGAGGGTG-----------------------------A--------------CGAC--TG-----CG-GG--------GTTCGAATGGTGTTGC---------------------CAAACCGTG---TGCATATATCGCACCTGGC---TGCCCTGCCAGTGTTGCCAA-TTG-TCC--AC-----ACTCACGACCG------------TCTGCGGAG--CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
droAna3
AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTCC--------------------TA-------TATA--CA-----TAT-A-CATATATGTG--TCCCCCA--AA-GTTCTC--GAAT------------------------------AATT---TTT----T------GTTTTTCTTAACGAAAACAACAACA-------------AAGTGTCCTAGACGAAGAGGGGGGGATGGGGAGGGCATGAGGAAGT-----------TGTGGCTGTG---------A-TA----AAGGGTTGC---------------------CAAACTGGCACACAT--ATATCGCACCTGGC-------C-GCCAGGGTTGCCAA-TTG-GCT--GC-----GCTCACGACCCGT---------------------CACTATTGCCATTTCACTCGCTCGTGCATTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....GTGAACAAGCGAAATTTTAATGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.............GCGAAATTTTAATGAAACCTGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................................................................................................................................................................................................................................................GAGGGGGGGATGGGGAGGG........................................................................................................................................................................................................................1911.001000001
...............GAAATTTTAATGAAACCTGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droBip1
AACACGTGAACAAGCGAAATTTTAATGAAACCTGCGAGCATATAAAGCAGGTAAGTCTCA---------------------A-------TATATACA-----TATTT---------------CACCA--AA-GTTCTC--GA------------------------------------AAA--AATTTT------GTTTTTGTCAACGAAAACAACAACA-------------AAGTGTCC---ATGAAGAGG-------------GGCATGAGGAAGT-----------TGTGGCAGTG---------C-TA----AAGGGTTGC---------------------CAAACTGGCACACAT--ATATCGCACCTGGC-------C-GCCAGAGTTGCCAA-TTG-GCT--GG-----GCTCACGACCCGT---------------------CACTGTTGCCATTTCACTCACTCGTGCATTTTSizeHit CountTotal NormTotal
No Reads
dp5
AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCAG---------------------A-------TTTATTCA-----TATTTT--------T--------------------CTCGCCTCAATACCAATTTTGGG-TAGAAAGA---------AAA-------C-------AATTTGTCAACAAAAACAACAAGAAAAACCGATTT---------------------------------------------------------------------------------C----AAGTGTTGCGAAGGTTAGCACCAGTGCTGCCAGA-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................ATTTTAATGAAACCAGCGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
....................TTTAATGAAACCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................ATTTTAATGAAACCAGCGAGCAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................AATTTTAATGAAACCAGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......GAACAAGCGAAATTTTAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.......................AATGAAACCAGCGAGCAAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..........................................................................................................................................TCGCCTCAATACCAATTTTGG.....................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
AACACGTGAACAAGCGAAATTTTAATGAAACCAGCGAGCAAATAAACCAGGTACGTTCAG---------------------A-------TTTATTCA-----TGTTTT--------T--------------------CTCGCCTCAATACCAATTTTGGGATAGAAAGA---------AAA-------C-------AATTTGTCAACAAAAACAACAAGAAAAACCGATTT---------------------------------------------------------------------------------C----AAGTGTTGCGAAGGTTAGCACCAGTGATGCCAGA-------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................TTTAATGAAACCAGCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
droWil2
AATACGTGAACAAGCGAAATTTTAATGAAACCAACGAAAGTATAAAGCAGGTATGTCATC--TCTCCGTGACCCAAAAAC----------------------AAAAA-----------------------------AAAAGACC------------------------------CAGC---TCCAACGT-------GTTTTATTAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................TTAATGAAACCAACGAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.........ACAAGCGAAATTTTAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..................ATTTTAATGAAACCAACGAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................ATGAAACCAACGAAAGTATAAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................GAAACCAACGAAAGTATAAAGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
AACACGTGAACAAGCGAAATTTTAATGAGAGCAGCGAGCAAATAAAGCAGGTATGTTTCAC--------------------A-------TTTAACCT-----TGTTT-----------------------------TTAAAATA------------------------------CAT-A--ACCAAATA-------ATAATAACAACAACA---ACAACA-------------GAATATC-----------------------------A----GCAATTCCAATAGCAATGAAA-------CTACA----AT----GAGTGTTGA---------------------CAAATTTTG---CAC--ATATCGGCATAAGC-C-AACACACACAGTGCTGCCAACTTA-ATA--GC-----ACA------GCGG---------------------CTATATTGCCATTTCGCTCGCACATGCATTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGTGCTGCCAACTTA-ATA--GC-----..................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAACTTA-ATA--GC-----AC................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........AAGCGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
................................AGCGAGCAAATAAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000001000000000000000000000000000000000000
..................................................GTATGTTTCAC--------------------A-------TTTAACCT-----TGT...........................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................ATGAGAGCAGCGAGCAAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
....................TTTAATGAGAGCAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................TA-------ATAATAACAACAACA---ACA...........................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AACACGTGAATAAACGAAATTTTAATGAGAGCAACGAACAAATAAAGCAGGTACGTTTCAC--------------------A-------TTTAACCT-----TGTTT-----------------------------TTAAAATA------------------------------CAT-A--ACCAAATA-------ATTGAA---ACAATAACAACAACAACA----------AG----------------------------------------CAATTGCAATAGCAATAAAA-------ATACA----AT----AAGTGTTGT---------------------CAAATTTTG---CAC--ATATCGGCTGTGAGTCAAACACAGGCAGAGCTGCCAACTTA-ATC--GC-----ACA------ACGG---------------------CTATATTGCCATTTCGCTCGCACATGCATTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................ATTTTG---CAC--ATATCGGCTGT.............................................................................................................2011.001100000
.......GAATAAACGAAATTTTAATGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........AAACGAAATTTTAATGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droGri2
AACACGTGAACAAACGAAATTTTAATGAGAACAGCGAGCAAATAAAGCAGGTACGTTTTAAC-------------------A-------TTTAACCT-----TGTTT---------------------TAA----------A------------------------------TACAT-AAC--CAAATA-------GTAATAACACCAACAACAACAAAA---------------ATAGC-----------------------------A----GCAATTGCAATAGCATTGAAACAGTA---------A-AC----GAGTGTTGG---------------------CAAAGTGTG---CAC--ATATCGTGAGTGGT---------GTCAGTGCTGCCAACTTA-ATC--GC-----ACACA----GCGG---------------------CTATATTGCCATTTCGCTCACACATGCATTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................AAATTTTAATGAGAACAGCGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
..............CGAAATTTTAATGAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101

Generated: 05/18/2015 at 06:23 PM