ID:

dsi_23716

 Coordinate:

3r:17662886-17662945 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-2.4 -2.0 -2.0

Flybase annnotation

exon [3r_17662751_17662885_-]; CDS [3r_17662751_17662885_-]; CDS [3r_17662946_17663023_-]; exon [3r_17662946_17663023_-]; intron [3r_17662886_17662945_-]

No Repeatable elements found

mature
  1. 3r:13323230-13323247 +
  2. dsi_23716  3r:17662922-17662939 -
  3. node_57215:165-182 +
  4. node_35351:164-181 +
star

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
CGATGAAGCGACCGGAGCCGCATCAGGACTTTGAAAAGACCATACAGAGAGTAAATAAGAGAACTCTGAATACTAAAATGTATCATAATTAAACGGTTACTATCTTCCAGCTAAAGACACAGAAGGCGGCCCAGAAAAAGCCAGCCAGTGCTCCAATGGA
**************************************************((((............(((.(((......))))))...........))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
........................AGGACTTTGAAAAGA......................................................................................................................... 15 0 1 56.00 56 46 8 0 0 1 1 0 0 0
........................................................ATGAGAACTTTGAATACTGAA................................................................................... 21 3 5 6.80 34 0 0 20 13 0 0 1 0 0
........................AGGACTTTGAAAAGAG........................................................................................................................ 16 1 7 4.29 30 21 5 0 0 2 0 0 2 0
..........................................................GAGAACTTTGAATACTGAA................................................................................... 19 2 3 2.67 8 0 0 7 1 0 0 0 0 0
.......................AAGGACTTTGAAAAGA......................................................................................................................... 16 1 15 2.20 33 21 9 0 0 3 0 0 0 0
........................................................ATGAGAACTTTGAATACTGA.................................................................................... 20 3 13 1.15 15 0 0 11 3 0 0 0 0 1
..........................................................GAGAACTTTGAATACTGA.................................................................................... 18 2 3 1.00 3 0 0 3 0 0 0 0 0 0
........................................................AAGAGAACTTTGAAGACTGAA................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
........................................................ATGAGAACTTTGAATACT...................................................................................... 18 2 14 0.29 4 0 0 4 0 0 0 0 0 0
........................................................AAAAGAACTCTGAATA........................................................................................ 16 1 12 0.25 3 0 2 0 0 0 0 0 1 0
........................................................AAGAGAACTCTGAATACT...................................................................................... 18 0 4 0.25 1 0 0 1 0 0 0 0 0 0
.............................................AGAGAGGAAATAAGAAGACTC.............................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0
...............................................................CTCTGAATACTAAACT................................................................................. 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0
.........................................................TGAGAACTTTGAATACTGA.................................................................................... 19 3 20 0.15 3 0 0 0 3 0 0 0 0 0
.......................CAGGACTTTGAACTGACC....................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0
......................TCTGGACTTTGAAAAAA......................................................................................................................... 17 2 20 0.10 2 0 0 0 0 2 0 0 0 0
........................................................ATGAGAACTCTGAAGACT...................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0
.........................................................TGAGAACTTTGAATACTGAA................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1
......................TCAGGACTTAGAACTGACC....................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
......................TCAGGACTTTTAAAAAAC........................................................................................................................ 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................AGAGAGGAAATAAGAAGACT............................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCTACTTCGCTGGCCTCGGCGTAGTCCTGAAACTTTTCTGGTATGTCTCTCATTTATTCTCTTGAGACTTATGATTTTACATAGTATTAATTTGCCAATGATAGAAGGTCGATTTCTGTGTCTTCCGCCGGGTCTTTTTCGGTCGGTCACGAGGTTACCT
**************************************************((((............(((.(((......))))))...........))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body
...............TCGGCGGAGTCCCTAAACTT............................................................................................................................. 20 3 6 0.17 1 1 0 0 0
..............................................................GGAGACCTATGATTCTACA............................................................................... 19 3 7 0.14 1 0 1 0 0
..............CTCGGCGGAGTCCCTAAAC............................................................................................................................... 19 3 20 0.10 2 2 0 0 0
......................................................................................................................................TTTTTCGGTCGGTCAAGT........ 18 2 16 0.06 1 0 0 1 0
...................TTTAGTCCGGAAACTTTTC.......................................................................................................................... 19 3 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 01:44 AM