ID:

dsi_2371

Coordinate:

3r:4685406-4685555 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAAGAATAGAGATCGCGACGAATTAATTGAGGAATTTTCAAAACATGCACGTAAGTGATCCAAAAACCAACAGCAACAGCAACCACAAACAAAGCAAAAGACCCCAAAAACAACCAGCCCAGCACCAAAAAAAAAACCAACCCCACAATTGGCTAACAGAATTGGCCAACCCCAATTAATTGTACTTAATCCCATAAATGTTTTTAGGGGCGATACTTGCAGAATTGAAAAACGCATGGAAGCCTACAAA ************************************************.((((((...............((....))....................................................................((((((((.....)))))))).............))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo
.....ATAGAGATCGCGACGAATTAATTGAG...........................................................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0
..........GATCGCGACGAATTAATTGAGGA.........................................................................................................................................................................................................................	23	0	1	2.00	2	2	0	0	0	0	0	0
..........GATCGCGACGAATTAATTGAGGAATTTT....................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0
.....ATAGAGATCGCGACGAATTAATTGAGG..........................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
.....ATAGAGATCGCGACGAATT..................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................TCCCCGAAATGTTTTTAGG..........................................	19	2	2	0.50	1	0	0	0	1	0	0	0
...........................................CATGCACGTATGTGA................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................GGGCGATACTTGCAA............................	15	1	10	0.10	1	0	0	0	0	0	1	0
..........................................................................................................................................................AACAGAATTGTCCCACC...............................................................................	17	2	15	0.07	1	0	0	0	1	0	0	0
...............................................................................................................................................................AATTGGCCAACCCGA............................................................................	15	1	17	0.06	1	0	0	0	0	1	0	0
..................................................................................CCACACATAAAGCAAAAGAAC...................................................................................................................................................	21	3	19	0.05	1	0	0	0	0	0	0	1
.................................................................................................................................................................................................................................TGTAAAACGCATGGA..........	15	1	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

ATTCTTATCTCTAGCGCTGCTTAATTAACTCCTTAAAAGTTTTGTACGTGCATTCACTAGGTTTTTGGTTGTCGTTGTCGTTGGTGTTTGTTTCGTTTTCTGGGGTTTTTGTTGGTCGGGTCGTGGTTTTTTTTTTGGTTGGGGTGTTAACCGATTGTCTTAACCGGTTGGGGTTAATTAACATGAATTAGGGTATTTACAAAAATCCCCGCTATGAACGTCTTAACTTTTTGCGTACCTTCGGATGTTT ************************************************.((((((...............((....))....................................................................((((((((.....)))))))).............))))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
.....................................................TCGCAAGGTTTTTGGTCGTCGT...............................................................................................................................................................................	22	3	2	1.00	2	2	0	0	0	0	0
.................................................................................................................................................................................TTACCATGAGTTAGGGTAT......................................................	19	2	1	1.00	1	0	1	0	0	0	0
............................................................................................................TTGTGGGTCGGGTTGTGGTT..........................................................................................................................	20	2	2	0.50	1	0	0	1	0	0	0
...........................................................................................................TTTGTTTGTCAGGTCGTGGTTAT........................................................................................................................	23	3	2	0.50	1	1	0	0	0	0	0
...........................................................................................................................TGGTTTTTTTTTTTGTGCGGGTGT.......................................................................................................	24	3	6	0.17	1	0	0	0	1	0	0
.......................................................................................TTCTTTCGTTTTTAGGGGTTTTT............................................................................................................................................	23	3	7	0.14	1	0	0	0	0	1	0
...........................................................................................................................................................................................TTAGGGAATTTACAAAAAACCG.........................................	22	3	10	0.10	1	0	0	0	0	0	1
...............................................................................................................TTGGTCCGGGCGTGGTT..........................................................................................................................	17	2	13	0.08	1	0	1	0	0	0	0
..............................................................................................................................TTTTTTTCTTGGTTG.............................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0
................................................................................................................................................................................ATTAAGATGAACCAGGGTA.......................................................	19	3	20	0.05	1	0	0	0	1	0	0

Generated: 04/24/2015 at 10:22 AM