ID:

dsi_23690

 Coordinate:

3r:10286974-10287050 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.3 -8.2 -7.8

Flybase annnotation

exon [3r_10286725_10286973_+]; CDS [3r_10286725_10286973_+]; CDS [3r_10287051_10287310_+]; exon [3r_10287051_10287310_+]; intron [3r_10286974_10287050_+]

No Repeatable elements found

mature
  1. 2l:20090642-20090656 -
  2. 2l:21988327-21988341 -
  3. 2l:22078439-22078453 +
  4. 2r:359932-359946 -
  5. 2r:1107298-1107312 -
  6. 2r:2716219-2716233 +
  7. dsi_23690  3r:10287022-10287036 +
  8. 4:10593-10607 -
  9. node_47791:13-27 -
  10. node_30480:1326-1340 -
  11. node_53218:149-163 +
star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------##################################################
TCAAGCGCAACAAGCTGACCCTCCTGGATCCGCAGGAATCGCTGGCCAGGGTGAGGATAACTTAATATACTTTTGCTCAAGTCGAAATTGCATTTATTTTTGAATTTCCGCTTATTTTCTTAACTAGATTGCTGCGCGTCCGGGAGCGCACAAATTGAGGTGCCTATTCCGCATCAC
**************************************************..........((.................(((.((((((.((........)))))))).))).............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
.......................................................................................................................................GCGTCCGGGAGCGCACAG........................ 18 1 1 1.00 1 1 0 0 0
...........................................................................................................................CAGGATTGCTGCGCGTCCGGGAGC.............................. 24 2 1 1.00 1 0 0 1 0
............................................................................................................................AGGATTGCTGCGCGTCCGGGA................................ 21 2 1 1.00 1 0 1 0 0
........................................................................................................................TGACTAGATTTCTGCTCGTC..................................... 20 3 7 0.14 1 0 0 0 1
..................................................................................................TTTGAATTTCCGCTT................................................................ 15 0 11 0.09 1 1 0 0 0
...............................................................................................................................ATTGGTGCGCCTCCGGGAT............................... 19 3 14 0.07 1 1 0 0 0

Anti-sense strand reads

AGTTCGCGTTGTTCGACTGGGAGGACCTAGGCGTCCTTAGCGACCGGTCCCACTCCTATTGAATTATATGAAAACGAGTTCAGCTTTAACGTAAATAAAAACTTAAAGGCGAATAAAAGAATTGATCTAACGACGCGCAGGCCCTCGCGTGTTTAACTCCACGGATAAGGCGTAGTG
**************************************************..........((.................(((.((((((.((........)))))))).))).............))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
.................................TCCTTTGCGATCGGTCC............................................................................................................................... 17 2 19 0.05 1 1

Generated: 04/24/2015 at 10:45 AM