ID:

dsi_23663

 Coordinate:

2r:8568696-8568845 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.3 -4.2

Flybase annnotation

exon [2r_8567802_8570164_+]; CDS [2r_8567802_8569561_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AGCAGACAAAGAACAACATTCAATAAAAGAAAACATTGTAAAGGGAGAAAGTAAGGATGAATCTAAAAAAGTAACAAAAACTGATCAGAAATCCGATTGTAAAAAAGGCCCGGATTCTGAATGTACAGAAATGGAAGAGGATACTGAGATGGTATCGGAAAAAGAATATGGTGGGTCCGCAGAGGAACAAGGTGATACTGAAAATATGAAAGATGACACATCTTCCGAAAGTCCCACTTTAATTGGAGAA
*************************************************************************************************************************..................((((((.....))))))......**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
..................TTCAATAAAAGAAAACATTGTAAAGGGA............................................................................................................................................................................................................ 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGTATCGGAAAAAGAATATGGTT............................................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGTACAGAAATGGAAGA................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................AAAAGGCCCGGATTCTGAATGTACA........................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................TGAGATGGTATCGGAAAA........................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................TCGGAAAAAGAATATGGTGGGTCCGCA..................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................TACTGAGATGGTATCGGAAAAAGAA.................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TCTGAATGTACAGAAATGGAAGAGGA............................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................TGATCAGAAATCCGATTGTAAAAAAGGC............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TGATCAGAAATCCGATTGTAAAAAAA............................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGAATGTACAGAAATGGAAGAGGATA........................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................AATCCGATTGTAAAAA................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GCGGAAAAAGAATATGGTGGGTCCGCA..................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................TACAGAAATGGAAGAGGATACTGAGA..................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AGAGGACCAAGGTGATACT................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................TCAATAAAAGAAAACATTGTAAAGGGA............................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CAAGGTGATACTGAAAATATGGAAGA..................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGTTATCGGAAAAAGA..................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
..............................AAACATTATAAGGGGAGA.......................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................TAGGTCCGTAGAGAAACAA............................................................ 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGTATCGGAAAAAAAAAA.................................................................................. 19 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTGCAAAATTGAAAGATGAC................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................CCGATTCTGACAGTACAGA......................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0
...............................................................................ACTGATCAGAGATCTGA.......................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1
............................................TAAAACGTAAGGATGAATC........................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGTTATCGGAAAAAGAG.................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCGTCTGTTTCTTGTTGTAAGTTATTTTCTTTTGTAACATTTCCCTCTTTCATTCCTACTTAGATTTTTTCATTGTTTTTGACTAGTCTTTAGGCTAACATTTTTTCCGGGCCTAAGACTTACATGTCTTTACCTTCTCCTATGACTCTACCATAGCCTTTTTCTTATACCACCCAGGCGTCTCCTTGTTCCACTATGACTTTTATACTTTCTACTGTGTAGAAGGCTTTCAGGGTGAAATTAACCTCTT
****************************************************************************************..................((((((.....))))))......************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................TAGGTTTTTTAACTGTTTTTGAC....................................................................................................................................................................... 23 3 3 0.67 2 2 0 0 0 0 0
.....................................................................................................................................................................................................GGCTTTTATACTTTCTACT.................................. 19 1 3 0.33 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................GTATAAGGCTTTCAGGTTGGA........... 21 3 7 0.14 1 0 0 1 0 0 0
....................................................................................................TTTTTTTCCGGCCTAAGACA.................................................................................................................................. 20 3 8 0.13 1 0 1 0 0 0 0
.....................................................................................................TTTTGCCAGGCCGAAGACT.................................................................................................................................. 19 3 18 0.11 2 0 2 0 0 0 0
.........................................................................................................................................................................................................TACATACTTTCTACTGTGAA............................. 20 3 10 0.10 1 0 0 0 1 0 0
........................................................................................................................................................................ACCACCCAGGCGGCGCC................................................................. 17 2 16 0.06 1 0 0 0 0 1 0
.......................................................................................................TCTCCGGGCCTGAGAC................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:8568646-8568895 + dsi_23663 AGCA------------------------------------GACAAAGAACAACAT---TCAATAAA---------------------------------AGAAAACATTGTAAAGGGAGAAAGT------------------AAGGATGAATCTAAAAAAGTAACAAAAACTGATCAGAAATCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATGGAAG------------AG------GATACTGAGATGGTATCGGAAAAAGAATATG---------------------GTGG---------------------------------------------------------------------------------------------------------GTCCGCAGAGGAACAAGGTGATACTGAAAATATGAAAGA---------------------T----------------GACACATCTTC---CGAAAGTCCCACTTTAATT-------GGAGAA
droSec2 scaffold_1:5414878-5415127 + AGCA------------------------------------GACAAAGAACAACAT---TCAACAAA---------------------------------AGAAAACATATTAAAGGGAGAAAGC------------------AAGGATGAATCTAAAAAAGTATCAAAAACTTATCAGAAATCAGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATGGAAG------------AG------GATACTGAGATGGTATCGGAAAAAGAATATG---------------------GCGG---------------------------------------------------------------------------------------------------------GTCCGCAGAGGAACAAGGTGATACTGAAAATATGGAAGA---------------------T----------------GAAACATCTTC---CGAAAGTCCCACTTTAATT-------AAAGAA
dm3 chr2R:7863705-7863942 + ATCA------------------------------------GACAAAAAACAACAT---TTAACAAA---------------------------------AGAAAACAATGTAAAGGGAGAAAGT------------------AAGGATGAATCA------------AAAACTGATCAGAAATCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATAGAAG------------AG------GAGACTGAGATGCTATCGGAAAAAGGATATG---------------------GCGG---------------------------------------------------------------------------------------------------------GTCCGAAAAGGAACAAGGTGATACTGAAAATATGGAAGA---------------------T----------------GAAACATCTTC---CGAAAGACCCACTTTAATT-------GGAGAA
droEre2 scaffold_4845:17932282-17932534 - TGCA------------------------------------GACAAAGAACAAAAT---TTAACAAA---------------------------------AGGAAACATTGTGAAGGGAGAAAGT------------------AAGGATGAATCTCGAAAGGTGTCAAAAAATGATCAGAAAACCGATTGTAAAGAAGATTC--------------------AG---------------------------------------------------------GA------------------------------GCTGAAATGGTATCGGGAAAAGAGGATGGCT------------------GCGGGACCGAAAAGGGACTAGAAAAAGAACA---------------------------------------------------------------------------------------------AGGTGATACTGAAAAAATGGAAGA---TGAAAATGGAGATTCTGA-------------------AACATCTTC---TGAAAATCCTACTTTAATT-------GGGGAG
droYak3 2R:9089782-9090019 - TGCA------------------------------------GACAAAGAACAACAT---TTAACAAA---------------------------------AGAAAACATTGTAAAGGGACAGTGT------------------AAGGATGAATCTAGAAAAGTCTCAAAAAATGATCAGAAATCCGATTGTAAAAAAGGTTC--------------------AA---------------------------------------------------------AA------------------------------GTTGAAATGGTATCGGAAACAGA---TGCCGGCTTAAAAGAAACATACGGCGGGTCCGAAAAAGTACTGGAAAAAGAACA---------------------------------------------------------------------------------------------AGGTGATACTGAAAA----------------------------------------------------GTCTTC---TGAAAATCCTACTTTAACT-------GGAGAA
droEug1 scf7180000409462:611775-612060 - AGCA------------------------------------GACAAGGAAACAGAT---TCAACAAA---------------------------------GGAAAATATTGAAAAGGAAGAAAGT------------------ACAAATAAAGCCGA------------AAGAGAGGAGAATGACGATAGCAAAGAAGTTTC--------------------GGAAAATACAGTAACCGAATC---------------------------------TACAGGAACGGAAG------------TAGTGTCTG------------------------------------------------------ATTCCGAAAATATAACAGAAAAAGAACAGTTTGATACTACAGAAAAGGAATTAGAGTCCGAAGAAGTTTCG-GAAAAAGAAAAGGCTAATCAAA-----------------AAGAGGTAGAAGAAATAGTTGAAAACGAAGAAAA---------------------T----------------------------------------AACATTGTC-------GAAGAA
droBia1 scf7180000302292:660614-660891 + ATCA------------------------------------GAGAAGATAAAAGAA---TTAACAAA---------------------------------GGATAAGCTTCTAAAGGAAGACAGT------------------AAGAAGGAAACCAG---------------------------------CAAAGAAGTTTC--------------------TAAAGATAAAAAGGCTGATGG---------------------------------TTCAGAAATCGAAG------------AA------GATTCGGAAATATCGTCAGAAAAAGAACAGTGTAATTCAA---------ACAG------------CGTATCAGAAA---------TTGGAGAATCAGAAGGGGAAGGTGAATTGAAAAGCGTTAA-------------------TCAAA-----------------AAGA---------------------------AAA---AAAATCAGCTGAAAAAGA-------------------CACAAGTTCAAACAAAAAACCTTCTTTAATT------AAGAGGG
droTak1 scf7180000415820:257847-258171 + AAAC------------------------------------GTAGCTGAAAAGATAGAATCC------------------------------------------AAAATTGTAAAGGAAGGAATT------------------GAGGAGGAATCCTGTCAAGTCTCAAAAAAAGGTAAGGATGTCAATAGCAAAGAAGTTTC--------------------GGAAAAAAAACAAACTGAAAA---------------------------------TACAGAAATGGAAG------------TA------GATTCTGAAATAGCTTCGGAAGAAAAACAGGCTGATCCCAAAGAAATTGACGTCGACTCCGAAAAAAAATCAGAAAAAGAGCTGAGTGGTGCTGCAGAAATGGAAGTAGAGTCCGATATTGTTTCA-GAAAAAGAAAAGGCTGATAAACAAGAAAAGAAAG---------------------------------------------------------------------------------------------ACGATCTTGACCCAGTT-------TCAGAA
droEle1 scf7180000491214:3378491-3378759 + GGCA----------AA-----------AATTGCC------GACAAAGCAAAGGAA---TTAACAAA---------------------------------GGAAAACATTGTAAAGGAAGTAAAG------------------CAGAACGAGTCAAAAAGGGTATCAAAAAAAGATGGGGAATCGGA--------------------------------------AAAGAAAAAGGTTGAAGA---------------------TTACAA------AATAGAAATGGAAG------------TG------GATTCCGAAAA------------------TGTAGAT------------------------------------------------------GAAACCGAAATGGAAGTCGAATCCGCAATAGTTTCA-AACAAAGAATTGGTTAATCAGAATGAAAAGAAAA----------------------------------------------------------------------------------ATGAAC---CAAA--AACCATTTCAAATAAAGATAAAATTA
droRho1 scf7180000779932:281108-281403 + AAAAGATCAAGGCAAA-----------AATATCT------GACAAGGAAATGGAA---TTAACAAA---------------------------------GG------------------AAAAC------------------AAAGACGAATCCAAAAAGGTCGCGGACACAGATCAGGAATCCGAAACCAAA---GTATC--------------------GGAAAAGAAAAAAGATGATTC---------------------------------AACAAAAATTGAAG---------------------------------TTTTCGAAAAAGAAAAGTCTCATCCGAAAGAAATGGACCTCGATTCCGAAAAGGTATTAGAAAAAGATCA------------------GAAAAACGAAGCAGATACTATTTTA-GAAAAAGAAAAGGC--------------------------------------------------------------------AACTAAAAATGA------------T---C----C---CAC---TGATAAAACACTTACAATT-------GCAGAA
droFic1 scf7180000453948:992639-992954 + AGCT------------------------------------GACAATGAAATTACA---TTAACAAA---------------------------------GGATAAAA---AAAATGAAGAAAAT------------------AAGAACGCATCTCAAAATGTTTTAAAAAAGGATGAGCAAGTAAACTCCAAAGAAAGTCC--------------------TT---------------CTAC---------------------------------TTCGGAAATGACAG------------AA------GTATCTGAAAAGGTTTCGGAAAAAGAACTTTCACCTCCGAAAGAAAA------------------AGTATCAAAAT---------CTGATACTGCAGAAATGGAAGTAGACTTACAAACCATTTTG-GATAAGAAAAAGACAGATCAGAAGGAACAGAAAG-----------------ATGTGAC------------AGA---AGAAACGACTGAGAAAGA------------T---C----T------------TAATCCAACTATAATT-------GCCGAT
droKik1 scf7180000302385:1140279-1140549 + GACA------------------------------------GAAAAAGAAAAGGCT---GAAGATAA---------------------------------GGACAA---------GGAAGAAGTT---------------AAACAAAAGGTAGCAGA------------AAAAGAAAAGT---------CTAAA-----------------------------------------------GA---------------------------------GCAGGATAAGGAA---------------------------GAAGTGGTTTCAGAAAAACAAAAGCCAGTTGAGAAAGAAATGAAGCTCCAGTCTAACAATACTTCAGAGACAGAA------------ACAGAAAAGGTCCTAGATCCAGT-ATCATCTGAGGAAAAGGAA-CCAAGGCA----------------GTCCAAAAAAGAACAAAACAAAAAGGAT----------------------------------------------------------AA---TGAAACAGCAACCTTGTCC-------GAAAAA
droAna3 scaffold_13266:8701781-8702017 + TGCG------------------------------------GATAAAGAAAAGGAACATCAAGAAATTAAA------------G---------AAACAGAAAATGAAC---AAATTAAAGACAGT------------------GATG------------------------------------CCGATTCTAATGACCTTTC--------------------AAAACCAGAAAA------------------------------------------TAAAGAAAGTAAAG------------AA------AAGAG---TGTGACTCCGAAAAAGAA----GGATAAAT--------------GCGA---------------------------------------------------CGATGTGGAAGAAACTCCA-GAAATCGATAAGAC--------------------------TGTGGT------------------------AGA---GAAGCCAGCCGAACCCAT------------G-------GAATCTTC---TGAAAATGT-----GAA---------ATGTGA
droBip1 scf7180000396759:126247-126332 - GACG------------------------------------AA----AAGGACCTT---TCGGAGAA---------------------------------GGAAACGAATGTGGATGCGGAAAAT------------------AAGGATAAATGTGACGATGCGG--AAGAAAGTCCAGGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004558:2601940-2602248 - AGTTTTAGAATCC---TATTTGGAGGAAATTTCAACCACAGAAAAAGAACAACCA---TTAAACAGCACAGAAACTGATGTCATCAAAGAGAGT----------ACAGAACTAAAGGAGAAAGA------------------A--------ACTT---------------------------------CCAAG--------GAGAAC-------------------ATAAAAG-----------------------------AAAACGC---AATTAAGGAATCAGACGAAAGTCCTAGCAAA---------GTAAAAGAAATTTCGAGCAAGGAAGATGGACAAAC--------------GCAA---------------------------------------------------------------------------------------------------------GTAAGCAAGGAAACAACGGAAAACC-TCGAAGTGGAAGTAAAAAAACCACACGA------AAACAAACCTAAAGAAA----GTCCTAT---TAAGGA-ACTCAAAGAGAG-------CCTTAA
droVir3 scaffold_12823:577702-577912 - AACG------------------------------------GAAGGCCTAGAA------------------------------GTGACAGAAAGCGCAGGAATTATGA---AAAATAAAAAGTCC------------------------------------------------------------------AAC--------GAAGCAACAATGGAAGTAACAGAAATAATTGAGGCTGATGACGAAAAAATTGAATTGAATGAAACTGAAACAGATACAACA------------------------------------------------------GCTG---------------------GTGT---------------------------------------------------------------------------------------------------------AACAACTGAGGAAGCGGATGAAGCTGAAGACGAAGAAAG---------------------T----------------A-------T----------GCCGCAATTAAAAT-----ATAGAGAA
droMoj3 scaffold_6496:3405099-3405362 + AACAATAAAAAATCAAAATGTGAAAGCAGCTGAAGCTATGGA---------AGAA---G---------------------------------ACACAGAAACTGCGC---TACATGAAGAATGCAGTGAAAATAATGAAGAACAGAAGGAAGCCAA------------GCAAGAAGGGATTGAA---CAGAAAGAGGGAGC--------------------GG---------------------------------------AACCTGT---AACTACAATAACCGATG------------AA------G---------------------------------------------------------------------------------------------CACCAAAGGATGTTGAGCAAGCAGCTCCTGCA-GAT--------------------------------------------------------GATGATGTGAAAAA---TGAGACAGCTGATACGGC------------A---C----CTTCTCA---TAAAGA----GCTTGACAT-------GGAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCA------------------------------------GACAAAGAACAACAT---TCAATAAA---------------------------------AGAAAACATTGTAAAGGGAGAAAGT------------------AAGGATGAATCTAAAAAAGTAACAAAAACTGATCAGAAATCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATGGAAG------------AG------GATACTGAGATGGTATCGGAAAAAGAATATG---------------------GTGG---------------------------------------------------------------------------------------------------------GTCCGCAGAGGAACAAGGTGATACTGAAAATATGAAAGA---------------------T----------------GACACATCTTC---CGAAAGTCCCACTTTAATT-------GGAGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................T---TCAATAAA---------------------------------AGAAAACATTGTAAAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000002000000000
...............................................................................................................................................................................................................................................................................................................................TGGTATCGGAAAAAGAATATG---------------------GTT.....................................................................................................................................................................................................................................2411.00100000000000001000
.................................................................................................................................................................................................................................................................................TGTACAGAAATGGAAG------------A...................................................................................................................................................................................................................................................................................................1711.00100000010000000000
................................................................................................................................................................................................AAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACA..........................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................TGAGATGGTATCGGAAAA.....................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................TCGGAAAAAGAATATG---------------------GTGG---------------------------------------------------------------------------------------------------------GTCCGCA....................................................................................................................2711.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................TACTGAGATGGTATCGGAAAAAGAA.................................................................................................................................................................................................................................................................2511.00100000001000000000
........................................................................................................................................................................................................................................................................TCTGA---ATGTACAGAAATGGAAG------------AG------GA..........................................................................................................................................................................................................................................................................................2611.00100000000010000000
...........................................................................................................................................................................TGATCAGAAATCCGATTGTAAAAAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...........................................................................................................................................................................TGATCAGAAATCCGATTGTAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................TGA---ATGTACAGAAATGGAAG------------AG------GATA........................................................................................................................................................................................................................................................................................2611.00100000000010000000
...................................................................................................................................................................................AATCCGATTGTAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
...................................................................................................................................................................................................................................................................................TACAGAAATGGAAG------------AG------GATACTGAGA..................................................................................................................................................................................................................................................................................2611.00100000000000001000
..........................................................TCAATAAA---------------------------------AGAAAACATTGTAAAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
AGCA------------------------------------GACAAAGAACAACAT---TCAACAAA---------------------------------AGAAAACATATTAAAGGGAGAAAGC------------------AAGGATGAATCTAAAAAAGTATCAAAAACTTATCAGAAATCAGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATGGAAG------------AG------GATACTGAGATGGTATCGGAAAAAGAATATG---------------------GCGG---------------------------------------------------------------------------------------------------------GTCCGCAGAGGAACAAGGTGATACTGAAAATATGGAAGA---------------------T----------------GAAACATCTTC---CGAAAGTCCCACTTTAATT-------AAAGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAACAAGGTGATACTGA................................................................................................2111.0010100
dm3
ATCA------------------------------------GACAAAAAACAACAT---TTAACAAA---------------------------------AGAAAACAATGTAAAGGGAGAAAGT------------------AAGGATGAATCA------------AAAACTGATCAGAAATCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATAGAAG------------AG------GAGACTGAGATGCTATCGGAAAAAGGATATG---------------------GCGG---------------------------------------------------------------------------------------------------------GTCCGAAAAGGAACAAGGTGATACTGAAAATATGGAAGA---------------------T----------------GAAACATCTTC---CGAAAGACCCACTTTAATT-------GGAGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGAAGA---------------------T----------------GAAACAT.......................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------T----------------GAAACATCTTC---CGAAAGACC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................AG------------AG------GAGACTGAGATGCTATCGGAA.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATACTGAAAATATGGAAGA---------------------T----------------GA............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
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.............................................................................................................................................................................................................................................................................................................................GATGCTATCGGAAAAAGGATATG---------------------GA......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................CCC--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATAG...................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................TGAGATGCTATCGGAAAAAGGATA...............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................TATCGGAAAAAGGATATG---------------------GCGG---------------------------------------------------------------------------------------------------------G..........................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAAGGTGATACTGAG...............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TGA---ATGTACAGAAATAGAAG------------AG------GAGACT......................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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........................................................................................................ACAATGTAAAGGGAGAAAGT------------------AAGGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................TTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTGATACTGAAAATATGGAA......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GAGACTGAGATGCTATCGGAAAA.....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................C--------------------GG---------------------------------------ATTCTGA---ATGTACAGAAATAGAAG------------....................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------GAAACATCTTC---CGAAAGA.........................1911.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................TATCGGAAAAAGGATATG---------------------........................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGTGATACTGAAAATATGGA.......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................................................................AGAAAGT------------------AAGGATGAATCA------------AAAACTGATC.................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGTACAG.........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CAT---TTAACAAA---------------------------------AGAAAACAATGTAAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CTGAGATGCTATCGGAAAAAGGATA...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AAACTGATCAGAAATCCGATTGT...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CGAAAGACCCACTTTAATT-------GGAGA.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---ATGT.............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GAGATGCTATCGGAAAAAGG..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AAAACTGATCAGAAATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................AATCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------AT.........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TGTACAGAAATAGAAG------------AG------GAGACTGAGA..................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AGAAG------------AG------GAGACTGAGATGC...............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GAAG------------AG------GAGACTGAGATGCTATCGGA........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................TTGTAAAAAAGGCCC--------------------GG---------------------------------------AT.........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CAATGTAAAGGGAGAAAGT------------------AAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TGAATCA------------AAAACTGATCAGAAATCCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................TCCGATTGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTGA---A................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................A------------AAAACTGATCAGAAATCCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TGTAAAAAAGGCCC--------------------GG---------------------------------------ATTCTG.....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GAGACTGAGATGCTATCGGA........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGTAAAGGGAGAAAGT------------------AGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
TGCA------------------------------------GACAAAGAACAAAAT---TTAACAAA---------------------------------AGGAAACATTGTGAAGGGAGAAAGT------------------AAGGATGAATCTCGAAAGGTGTCAAAAAATGATCAGAAAACCGATTGTAAAGAAGATTC--------------------AG---------------------------------------------------------GA------------------------------GCTGAAATGGTATCGGGAAAAGAGGATGGCT------------------GCGGGACCGAAAAGGGACTAGAAAAAGAACA---------------------------------------------------------------------------------------------AGGTGATACTGAAAAAATGGAAGA---TGAAAATGGAGATTCTGA-------------------AACATCTTC---TGAAAATCCTACTTTAATT-------GGGGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................AACATTGTGAAGGGAGAAAGT------------------AAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................TAACAAA---------------------------------AGGAAACATTGTGAAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
....................................................................................................................................................................CAAAAAATGATCAGAAAACC.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGGAGATTCTGA-------------------AAC.........................................2011.0010000010
.................................................................................................................................................................................................................................................................................................................................GTATCGGGAAAAGAGGATGGC...........................................................................................................................................................................................................................................................2111.0010000100
droYak3
TGCA------------------------------------GACAAAGAACAACAT---TTAACAAA---------------------------------AGAAAACATTGTAAAGGGACAGTGT------------------AAGGATGAATCTAGAAAAGTCTCAAAAAATGATCAGAAATCCGATTGTAAAAAAGGTTC--------------------AA---------------------------------------------------------AA------------------------------GTTGAAATGGTATCGGAAACAGA---TGCCGGCTTAAAAGAAACATACGGCGGGTCCGAAAAAGTACTGGAAAAAGAACA---------------------------------------------------------------------------------------------AGGTGATACTGAAAA----------------------------------------------------GTCTTC---TGAAAATCCTACTTTAACT-------GGAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................GT------------------AAGGATGAATCTAGAAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................GTTGAAATGGTATCGGAAAC.....................................................................................................................................................................................................................................................................2011.00110000000000
............................................................................................................................................................................GATCAGAAATCCGATTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEug1
AGCA------------------------------------GACAAGGAAACAGAT---TCAACAAA---------------------------------GGAAAATATTGAAAAGGAAGAAAGT------------------ACAAATAAAGCCGA------------AAGAGAGGAGAATGACGATAGCAAAGAAGTTTC--------------------GGAAAATACAGTAACCGAATC---------------------------------TACAGGAACGGAAG------------TAGTGTCTG------------------------------------------------------ATTCCGAAAATATAACAGAAAAAGAACAGTTTGATACTACAGAAAAGGAATTAGAGTCCGAAGAAGTTTCG-GAAAAAGAAAAGGCTAATCAAA-----------------AAGAGGTAGAAGAAATAGTTGAAAACGAAGAAAA---------------------T----------------------------------------AACATTGTC-------GAAGAASizeHit CountTotal NormTotal
No Reads
droBia1
ATCA------------------------------------GAGAAGATAAAAGAA---TTAACAAA---------------------------------GGATAAGCTTCTAAAGGAAGACAGT------------------AAGAAGGAAACCAG---------------------------------CAAAGAAGTTTC--------------------TAAAGATAAAAAGGCTGATGG---------------------------------TTCAGAAATCGAAG------------AA------GATTCGGAAATATCGTCAGAAAAAGAACAGTGTAATTCAA---------ACAG------------CGTATCAGAAA---------TTGGAGAATCAGAAGGGGAAGGTGAATTGAAAAGCGTTAA-------------------TCAAA-----------------AAGA---------------------------AAA---AAAATCAGCTGAAAAAGA-------------------CACAAGTTCAAACAAAAAACCTTCTTTAATT------AAGAGGGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAC------------------------------------GTAGCTGAAAAGATAGAATCC------------------------------------------AAAATTGTAAAGGAAGGAATT------------------GAGGAGGAATCCTGTCAAGTCTCAAAAAAAGGTAAGGATGTCAATAGCAAAGAAGTTTC--------------------GGAAAAAAAACAAACTGAAAA---------------------------------TACAGAAATGGAAG------------TA------GATTCTGAAATAGCTTCGGAAGAAAAACAGGCTGATCCCAAAGAAATTGACGTCGACTCCGAAAAAAAATCAGAAAAAGAGCTGAGTGGTGCTGCAGAAATGGAAGTAGAGTCCGATATTGTTTCA-GAAAAAGAAAAGGCTGATAAACAAGAAAAGAAAG---------------------------------------------------------------------------------------------ACGATCTTGACCCAGTT-------TCAGAASizeHit CountTotal NormTotal
No Reads
droEle1
GGCA----------AA-----------AATTGCC------GACAAAGCAAAGGAA---TTAACAAA---------------------------------GGAAAACATTGTAAAGGAAGTAAAG------------------CAGAACGAGTCAAAAAGGGTATCAAAAAAAGATGGGGAATCGGA--------------------------------------AAAGAAAAAGGTTGAAGA---------------------TTACAA------AATAGAAATGGAAG------------TG------GATTCCGAAAA------------------TGTAGAT------------------------------------------------------GAAACCGAAATGGAAGTCGAATCCGCAATAGTTTCA-AACAAAGAATTGGTTAATCAGAATGAAAAGAAAA----------------------------------------------------------------------------------ATGAAC---CAAA--AACCATTTCAAATAAAGATAAAATTASizeHit CountTotal NormTotal
No Reads
droRho1
AAAAGATCAAGGCAAA-----------AATATCT------GACAAGGAAATGGAA---TTAACAAA---------------------------------GG------------------AAAAC------------------AAAGACGAATCCAAAAAGGTCGCGGACACAGATCAGGAATCCGAAACCAAA---GTATC--------------------GGAAAAGAAAAAAGATGATTC---------------------------------AACAAAAATTGAAG---------------------------------TTTTCGAAAAAGAAAAGTCTCATCCGAAAGAAATGGACCTCGATTCCGAAAAGGTATTAGAAAAAGATCA------------------GAAAAACGAAGCAGATACTATTTTA-GAAAAAGAAAAGGC--------------------------------------------------------------------AACTAAAAATGA------------T---C----C---CAC---TGATAAAACACTTACAATT-------GCAGAASizeHit CountTotal NormTotal
No Reads
droFic1
AGCT------------------------------------GACAATGAAATTACA---TTAACAAA---------------------------------GGATAAAA---AAAATGAAGAAAAT------------------AAGAACGCATCTCAAAATGTTTTAAAAAAGGATGAGCAAGTAAACTCCAAAGAAAGTCC--------------------TT---------------CTAC---------------------------------TTCGGAAATGACAG------------AA------GTATCTGAAAAGGTTTCGGAAAAAGAACTTTCACCTCCGAAAGAAAA------------------AGTATCAAAAT---------CTGATACTGCAGAAATGGAAGTAGACTTACAAACCATTTTG-GATAAGAAAAAGACAGATCAGAAGGAACAGAAAG-----------------ATGTGAC------------AGA---AGAAACGACTGAGAAAGA------------T---C----T------------TAATCCAACTATAATT-------GCCGATSizeHit CountTotal NormTotal
No Reads
droKik1
GACA------------------------------------GAAAAAGAAAAGGCT---GAAGATAA---------------------------------GGACAA---------GGAAGAAGTT---------------AAACAAAAGGTAGCAGA------------AAAAGAAAAGT---------CTAAA-----------------------------------------------GA---------------------------------GCAGGATAAGGAA---------------------------GAAGTGGTTTCAGAAAAACAAAAGCCAGTTGAGAAAGAAATGAAGCTCCAGTCTAACAATACTTCAGAGACAGAA------------ACAGAAAAGGTCCTAGATCCAGT-ATCATCTGAGGAAAAGGAA-CCAAGGCA----------------GTCCAAAAAAGAACAAAACAAAAAGGAT----------------------------------------------------------AA---TGAAACAGCAACCTTGTCC-------GAAAAASizeHit CountTotal NormTotal
No Reads
droAna3
TGCG------------------------------------GATAAAGAAAAGGAACATCAAGAAATTAAA------------G---------AAACAGAAAATGAAC---AAATTAAAGACAGT------------------GATG------------------------------------CCGATTCTAATGACCTTTC--------------------AAAACCAGAAAA------------------------------------------TAAAGAAAGTAAAG------------AA------AAGAG---TGTGACTCCGAAAAAGAA----GGATAAAT--------------GCGA---------------------------------------------------CGATGTGGAAGAAACTCCA-GAAATCGATAAGAC--------------------------TGTGGT------------------------AGA---GAAGCCAGCCGAACCCAT------------G-------GAATCTTC---TGAAAATGT-----GAA---------ATGTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................GATAAAT--------------GCGA---------------------------------------------------CGATGTGG.........................................................................................................................................................................1913.003000003
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCA-GAAATCGATAAGAC--------------------------T....................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................GATAAAT--------------GCGA---------------------------------------------------CGATGTG..........................................................................................................................................................................1811.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAAACTCCA-GAAATCGATAAGA................................................................................................................................................2611.001010000
................................................................................................................ATTAAAGACAGT------------------GATG------------------------------------CCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................AAGTAAAG------------AA------AAGAG---TGTGA...............................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................AAAT--------------GCGA---------------------------------------------------CGATGTGGAAGAAACTCC...............................................................................................................................................................2611.001010000
droBip1
GACG------------------------------------AA----AAGGACCTT---TCGGAGAA---------------------------------GGAAACGAATGTGGATGCGGAAAAT------------------AAGGATAAATGTGACGATGCGG--AAGAAAGTCCAGGAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
AGTTTTAGAATCC---TATTTGGAGGAAATTTCAACCACAGAAAAAGAACAACCA---TTAAACAGCACAGAAACTGATGTCATCAAAGAGAGT----------ACAGAACTAAAGGAGAAAGA------------------A--------ACTT---------------------------------CCAAG--------GAGAAC-------------------ATAAAAG-----------------------------AAAACGC---AATTAAGGAATCAGACGAAAGTCCTAGCAAA---------GTAAAAGAAATTTCGAGCAAGGAAGATGGACAAAC--------------GCAA---------------------------------------------------------------------------------------------------------GTAAGCAAGGAAACAACGGAAAACC-TCGAAGTGGAAGTAAAAAAACCACACGA------AAACAAACCTAAAGAAA----GTCCTAT---TAAGGA-ACTCAAAGAGAG-------CCTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGCAAGGAAACAACGGAA......................................................................................................2111.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAAACAACGGAAAA....................................................................................................1811.00101000
.........................................................................ACTGATGTCATCAAAGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
............................................................................................................................................................................................................................................................................................................................AAGAAATTTCGAGCAAGGAAG................................................................................................................................................................................................................................................................2111.00100100
...........CC---TATTTGGAGGAAATTTCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.................................................................................................................................................................................................................................................................................ATTAAGGAATCAGACGAAAGTCCTAGCA....................................................................................................................................................................................................................................................................................................2811.00100100
..........................................................................................................AGAACTAAAGGAGAAAGA------------------A--------ACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................................................................................................CGC---AATTAAGGAATCAGACGA...............................................................................................................................................................................................................................................................................................................2111.00101000
...........................................................................................................GAACTAAAGGAGAAAGA------------------A--------ACTT---------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..........................................................................................................................................................................................................................................................................................................................................................C--------------GCAA---------------------------------------------------------------------------------------------------------GTAAGCAAGGAAACAACGG........................................................................................................2411.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGGAAAACC-TCGAAGT..........................................................................................2111.00100100
..........................................................................................................................................................................................................................................................................................................................AAAAGAAATTTCGAGCAAGGA..................................................................................................................................................................................................................................................................2111.00101000
...........................................................................................................GAACTAAAGGAGAAAGA------------------A--------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
droVir3
AACG------------------------------------GAAGGCCTAGAA------------------------------GTGACAGAAAGCGCAGGAATTATGA---AAAATAAAAAGTCC------------------------------------------------------------------AAC--------GAAGCAACAATGGAAGTAACAGAAATAATTGAGGCTGATGACGAAAAAATTGAATTGAATGAAACTGAAACAGATACAACA------------------------------------------------------GCTG---------------------GTGT---------------------------------------------------------------------------------------------------------AACAACTGAGGAAGCGGATGAAGCTGAAGACGAAGAAAG---------------------T----------------A-------T----------GCCGCAATTAAAAT-----ATAGAGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................AA------------------------------GTGACAGAAAGCGCAGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGAGGAAGCGGATGAAGCT..................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
..............................................CTAGAA------------------------------GTGACAGAAAGCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
.............................................CCTAGAA------------------------------GTGACAGAAAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGAGGAAGCGGATGAA.....................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................CAGAAATAATTGAGGCTGATGA...............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................AAGTCC------------------------------------------------------------------AAC--------GAAGCAACAATG............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TAACAGAAATAATTGAGGCTG...................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
AACAATAAAAAATCAAAATGTGAAAGCAGCTGAAGCTATGGA---------AGAA---G---------------------------------ACACAGAAACTGCGC---TACATGAAGAATGCAGTGAAAATAATGAAGAACAGAAGGAAGCCAA------------GCAAGAAGGGATTGAA---CAGAAAGAGGGAGC--------------------GG---------------------------------------AACCTGT---AACTACAATAACCGATG------------AA------G---------------------------------------------------------------------------------------------CACCAAAGGATGTTGAGCAAGCAGCTCCTGCA-GAT--------------------------------------------------------GATGATGTGAAAAA---TGAGACAGCTGATACGGC------------A---C----CTTCTCA---TAAAGA----GCTTGACAT-------GGAGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................TAACCGATG------------AA------G---------------------------------------------------------------------------------------------CACCAAAGGATGTTG...............................................................................................................................................................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA---TGAGACAGCTGATACGGC------------...................................................2311.001000010
.....................................................................................................................................................AAGCCAA------------GCAAGAAGGGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGATACGGC------------A---C----CTTCT.....................................2111.001100000
.......................................................................................................................................................................................................................................................................................ATAACCGATG------------AA------G---------------------------------------------------------------------------------------------CACCAA........................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................CGATG------------AA------G---------------------------------------------------------------------------------------------CACCAAAGGATGT.................................................................................................................................................................................2111.001100000

Generated: 05/19/2015 at 05:36 AM