ID:

dsi_23652

Coordinate:

3l:7999674-7999964 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.1 -17.2 -17.2

Flybase annnotation

CDS [3l_7999530_7999673_-]; exon [3l_7999323_7999673_-]; CDS [3l_7999965_8000266_-]; exon [3l_7999965_8000266_-]; intron [3l_7999674_7999964_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGTGCTGAACATCAACTCCATCGTCTATGGCTTGCAGTTTCTATTCCTGGTTTGTATTTCGAGATTTGTGTTCTTTTAGAGGCTATACGCTTTGTTCCATAAGTCTTGATCAACAGCCACAGTTTTCAAGTTACAATTGAGTTTGTATGTCTTGTTATGTGAACAATTGATTTCTAATTCTGCTTAATTGAATGCCCACTGAAATAATTACAGTATAAATGTTTAGATTATTAACGAAAACAAACAAAAAATCATGATATAGTTATTTAAACCACTTAACGATCATTATTTATGTTTTTGTTATTACACAGTATTACTAATCCAAATCAACTGCTTCCAGGAACCCAATCCCGAGGATCCGCTCAACAAGGAGGCGGCCGACGTCCTGCA
****************************************************************.....(((((.....(((((((((.((((.(((...(((..(((((..(((.......))).)))))))).))).)))).)))).))))).......)))))..........***********************************************************************************************************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total M024
male body
SRR553488
RT_0-2 hours eggs
M025
embryo
SRR553485
Chicharo_3 day-old ovaries
SRR553486
Makindu_3 day-old ovaries
SRR618934
dsim w501 ovaries
SRR553487
NRT_0-2 hours eggs
M023
head
SRR902009
testis
M053
female body
..................................................................................................................................................................................................................................................................................................................................................................AGGATCCGCTCAACAAGGAG................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........ACATCAACTCCATCGTCTATGGCTT..................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TCCAAATCAACTGCTTCCAGGA................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
CAGTGCTGAACATCAACTCCATCGTC............................................................................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GGAACCCAATCCCGAGGAT................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........ATCAACTCCATCGTCTATGGCT...................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................CCCGAGGATCCGCTCAACAAGGAGGC............... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................TGGCTTGCAGTTTCTATTCCT...................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
............TCAACTCCATCGTCTATGGCT...................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................ATTTGTGTTCTTTTAGAGG.................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................TTATGTGAACAATTGATTTCT....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........AACATCAACTCCATCGTCTATGGCT...................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....GCTGAACATCAACTCCAT................................................................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................ACAAAAAATCATGATATAGTT.............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........ACATCAACTCCATCGTCTATGGCG...................................................................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......GAACATCAACTCCATCGTCTATGGCTT..................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................AATCCCGAGGATCCGCTCAAC....................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........AACATCAACTCCATCGTCTATGGC....................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............AACTCCATCGTCTATGGCTT..................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............AACTCCATCGTCTATGGCT...................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........AACATCAACTCCATCGTCTATGGCTT..................................................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............AACTCCATCGTCTATGGCC...................................................................................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........ACATCAACTCCATCGTCTATGGCTTTC................................................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........CATCAACTCCATCGTCTATGGCT...................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........CATCAACTCCATCGTCTATGGCTTTC................................................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ATTTAAATCCCTTAACGA............................................................................................................ 18 2 8 0.63 5 0 2 0 0 0 0 3 0 0 0
.........................................................................................................................................................................................................................................................................ATTTAAACCTCTTAACG............................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.......................................................TATTTCGAGTTTTGAGTTCTTCT......................................................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................TTAAACCTCTTAACGA............................................................................................................ 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...............................................................GATTTGTGTTCTTTT......................................................................................................................................................................................................................................................................................................................... 15 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................CAACTTACAATTGTGGTTGTA................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................CAACTTACAATTGTGTTAGTA................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1
...............ACTCCATCGTATGTGGCT...................................................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.............................GGGTTGCAGGTTCAATTCCT...................................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................TAACGAAAACGAACAAAAA............................................................................................................................................ 19 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................TTAAACCTCTTAACG............................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 0 1 0 0 0
.........................................CTATTCCTGGTTTGA............................................................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................AATGATCCAAATCAACTG......................................................... 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAACTTACAATTGTGTTAGT.................................................................................................................................................................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCACGACTTGTAGTTGAGGTAGCAGATACCGAACGTCAAAGATAAGGACCAAACATAAAGCTCTAAACACAAGAAAATCTCCGATATGCGAAACAAGGTATTCAGAACTAGTTGTCGGTGTCAAAAGTTCAATGTTAACTCAAACATACAGAACAATACACTTGTTAACTAAAGATTAAGACGAATTAACTTACGGGTGACTTTATTAATGTCATATTTACAAATCTAATAATTGCTTTTGTTTGTTTTTTAGTACTATATCAATAAATTTGGTGAATTGCTAGTAATAAATACAAAAACAATAATGTGTCATAATGATTAGGTTTAGTTGACGAAGGTCCTTGGGTTAGGGCTCCTAGGCGAGTTGTTCCTCCGCCGGCTGCAGGACGT
***********************************************************************************************************************************************************************************************************************.....(((((.....(((((((((.((((.(((...(((..(((((..(((.......))).)))))))).))).)))).)))).))))).......)))))..........****************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
SRR618934
dsim w501 ovaries
SRR553487
NRT_0-2 hours eggs
SRR553485
Chicharo_3 day-old ovaries
SRR902009
testis
M023
head
O001
Testis
M024
male body
O002
Head
SRR902008
ovaries
SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................................................................................................................................................................................................................GTTAGGGCTCCTAGGCGAGTT........................ 21 0 1 3.00 3 1 1 0 1 0 0 0 0 0 0 0
................................................................................................AGGTATTCAGAACTAGTTGTC.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................ACAATAATGTGTCATAAT.......................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................................TTGGGTTAGGGCTCCTAGGCG............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTACGGGTGACTTTATTAATG................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................TGTTTGTTTTTTAGTACTATA.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................ACAAGGTACTCAGAACTAGTT..................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................TGTCAAAAGTTCAATGTTAAC........................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GATTTGGTGAATTGCTAGTAA....................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GTGAATTGCTAGTAATAGATA................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................GGGTTAGGGCTCCTAGGCGA........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........TTGTAGTTGAGGTAGCAGATA.......................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................TGATTAGGTTTAGTTGACGA....................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TTAGGGCTCCTAGGCGAGTTG....................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................CGAAACAAGGTATTCAGAACT......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.TCACGACTTGTAGTTGAGGTA................................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AATGTTTCATAATGATTAGGTTTAGTT............................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CTAAAGATTAAGACGAATT........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TTAGGTTAAGTTGACGAAGGT................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................ATATGCGAAACAAGGTATT................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................AAAAGATAAGGACCAAACATAA............................................................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTTACGGGTGACTTTATTA...................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TTGGGTTAGGGCTGCTAGGCGA........................... 22 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CATGCAGAACAATAGACT.................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AAATAGTAATGTGTCATAA........................................................................... 19 2 5 0.40 2 0 0 0 0 0 0 0 0 0 0 2
..............................CGGACGTCAAAGTTAAGGATC.................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................AAATAGTAATGTGTCATA............................................................................ 18 2 12 0.25 3 0 0 0 0 0 0 0 0 0 0 3
.....................................................................................................................GGTGTCAATAGTTCA................................................................................................................................................................................................................................................................... 15 1 9 0.22 2 0 0 1 1 0 0 0 0 0 0 0
................................AACGTCAAAGAAAAGGA...................................................................................................................................................................................................................................................................................................................................................... 17 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
............AGTTGGGGTAGCAGACAC......................................................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATGCAGTAGAATACACTTGT................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AGATGACGAATGTCCT................................................ 16 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
............AGTTGGGGTACCAGACACC........................................................................................................................................................................................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GTGAATTGCTAGTGGTAAGT.................................................................................................. 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
.................AGGTAGCAGATGCGGAA..................................................................................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................GGTGTCAATAGTTCATT................................................................................................................................................................................................................................................................. 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................AGTAATTTGGTGAATTGCAA........................................................................................................... 20 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGTTGTCGGTGTCA........................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................ATAGCTAGTAATAAA................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................AAAAAAATAATGTGGCAT............................................................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................AAGGTGTTCAGAAATAGGT..................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................AAATAGTAATGTGTCAT............................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................................................................................................GGCTAGTGGTTCCTCCG............... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:36 AM