ID:

dsi_23616

Coordinate:

3r:10285895-10286044 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10286045_10286161_+]; exon [3r_10286045_10286161_+]; intron [3r_10283908_10286044_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTCTTATAGAAAAGTCAATATTTGGTCAGCTCTTTTATATTTGCCATGTTGAATTACTAATGTCTCATATCTAGGAATGCGAAATGATAACAATTGCAATTTATTGCATAATCTCTGACTTACTCATGAATAAGTGACTGTGAAAAAGGTCTAAGCCCGAATATAATTGTTTTAAATATTTATTTAAAATTTTTCTTCAGTCACATGACACAATCTGCGGGTTGGCTGCCAGCTTGCGAGGATTGGAGCA ************************************************..........(((.((((.((.........)).))))..)))..(((((....)))))....((..(((((((((((......))))..))).....))))..)).............(((((((((....)))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................................................................................CACATGACACAATCTGCGGGTTGGCT.......................	26	0	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................TCTGCGGGTTGGCTGCCAGCT................	21	0	1	1.00	1	0	1	0	0	0
...........AAGTCAGTAGTTGGCCAGCTCT.........................................................................................................................................................................................................................	22	3	1	1.00	1	0	0	1	0	0
...........................................................................................................................TCATGAATAAGTGACTGCGGAAAAGGTC...................................................................................................	28	2	1	1.00	1	1	0	0	0	0
.......................................................................................................................TTACTCATGAATAAGTGACTGCGGA..........................................................................................................	25	2	1	1.00	1	1	0	0	0	0
............................................................................................................................CATGAATAAGTGACTGCGGAAAAGGTC...................................................................................................	27	2	1	1.00	1	1	0	0	0	0
................................................................................................................CTCTGAACTACTCATGAATG......................................................................................................................	20	3	5	0.40	2	0	0	0	2	0
....................TTTGGTCAGCTCTGT.......................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

AAGAATATCTTTTCAGTTATAAACCAGTCGAGAAAATATAAACGGTACAACTTAATGATTACAGAGTATAGATCCTTACGCTTTACTATTGTTAACGTTAAATAACGTATTAGAGACTGAATGAGTACTTATTCACTGACACTTTTTCCAGATTCGGGCTTATATTAACAAAATTTATAAATAAATTTTAAAAAGAAGTCAGTGTACTGTGTTAGACGCCCAACCGACGGTCGAACGCTCCTAACCTCGT ************************************************..........(((.((((.((.........)).))))..)))..(((((....)))))....((..(((((((((((......))))..))).....))))..)).............(((((((((....)))))))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.............................................................................................................TTAGAGACTGAAGTAGTTCTTA.......................................................................................................................	22	3	2	0.50	1	1	0	0	0	0
..................ATAAACCAGTCTTGAAAATATAT.................................................................................................................................................................................................................	23	3	3	0.33	1	0	0	1	0	0
.............................................TACAACTTAAGGATTAGAGGGTA......................................................................................................................................................................................	23	3	3	0.33	1	0	1	0	0	0
......................................................................................................................................................................................AAATTTTAATAAGAAGT...................................................	17	1	12	0.25	3	0	1	1	1	0
........................................................................................................................................................................................ATTTTAAAAAGAGTTCAGCGT.............................................	21	3	20	0.05	1	0	0	0	0	1
...................................................................................................................................................................................AAAAAATTTTAATAAGAAGT...................................................	20	2	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 10:40 AM