ID:

dsi_23567

 Coordinate:

x:11162590-11162800 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.9 -14.2 -14.1

Flybase annnotation

five_prime_UTR [x_11162745_11162885_+]; exon [x_11162745_11162904_+]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##########################################################################################################
TTACAATTGCAAGTTCGAAGTCACAGTACCCAAATAGGATAGTTATTCTGGTAAAATACATAAATAAATACCAACCATAACTTTTGCAAAAGCTTTGTTTTAATGAATTCATAAAAAACTGTATTTTAAATTCCAAAAGAATTTATATTAACATATGAGACTATCGAATGACATCAGCGTAGGCTATGCGATATTTGTTTCATCAGCTGCTTTGCTTGTCCATCTCTAAACACCACGTCAATTTGTTTTCTACACAAACAGATCAAAATATTCAGGTTTGGCCCAGATTTGGAAATATTTCAAGGAAACGA
************************************************************************************************************************************************...........((............(((...((((..(((((((.(((....))).))).))))....)))).)))..........))..***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body
.............TTCGAAGTCACAGTACCCAAATAGGA................................................................................................................................................................................................................................................................................ 26 0 1 15.00 15 12 3 0 0 0 0 0 0 0 0 0
TTACAATTGCAAGTTCGAAGTCACAG............................................................................................................................................................................................................................................................................................. 26 0 1 4.00 4 2 0 0 0 1 1 0 0 0 0 0
..........................TACCCAAATAGGATAGTTATTCTGG.................................................................................................................................................................................................................................................................... 25 0 1 3.00 3 0 1 0 0 1 0 1 0 0 0 0
.......TGCAAGTTCGAAGTCACAGTACCCAAA..................................................................................................................................................................................................................................................................................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
.TACAATTGCAAGTTCGAAGTCACAGTA........................................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
TTACAATTGCAAGTTCGAAGTCACAGTA........................................................................................................................................................................................................................................................................................... 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGTCCATCTCTAAACACC............................................................................. 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...........AGTTCGAAGTCACAGTACCCAAATAGGA................................................................................................................................................................................................................................................................................ 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.TACAATTGCAAGTTCGAAGTCACAGT............................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............TTCGAAGTCACAGTACCCAAATAGGATAGT............................................................................................................................................................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................CCCAAATAGGATAGTTATTCTGGTAAAA............................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCATCTCTAAACACCACG.......................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................ATAGTTATTCTGGTAAAATACA........................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..ACAATTGCAAGTTCGAAGT.................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
....................TCACAGTACCGAAATAGGATAGTTATT........................................................................................................................................................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............TCGAAGTCACAGTACCCAAATAGGA................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............TTTGAAGTCACAGTACCCAAATAGGA................................................................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................TAGGATAGTTATTCTGGTAAAATACATA......................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ATATTCAGGTTTGGCCCAGAT....................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................TAAATACCAACCATAACTTTTGCAAAAAA.......................................................................................................................................................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............TTCTAAGTCACAGTACCCAAATAGGA................................................................................................................................................................................................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............TTCGAAGTCACAGTACCCAAATAGG................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................TAGGATAGTTATTCTGGTAAAATACA........................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..ACAATTGCAAGTTCGAAGTCACAGTA........................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATATTAACATATGAGACT..................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................GTCACAGTACCCAAATAGGATAGTT........................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................TCTACACAAACAGATCAA............................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................CCAAATAGGATAGTTATTCTGGTAAAATA............................................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................TACCCAAATAGGATAGTTATTCT...................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......TTGCAAGTTCGAAGTCACAGTACCCAAA..................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................TAGGATAGTTATTCTGGTAAAATACAT.......................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....AATTGCAAGTTCGAAGTCACAGTA........................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............CGAAGTCACAGTACCCAAATAGGATAGT............................................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................TTCTGGTAAAATACATAAATAAA................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................AAAATCTTCACGTTTGGACC........................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................TAATGAGTTCGTAAAAAA................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AATGTTAACGTTCAAGCTTCAGTGTCATGGGTTTATCCTATCAATAAGACCATTTTATGTATTTATTTATGGTTGGTATTGAAAACGTTTTCGAAACAAAATTACTTAAGTATTTTTTGACATAAAATTTAAGGTTTTCTTAAATATAATTGTATACTCTGATAGCTTACTGTAGTCGCATCCGATACGCTATAAACAAAGTAGTCGACGAAACGAACAGGTAGAGATTTGTGGTGCAGTTAAACAAAAGATGTGTTTGTCTAGTTTTATAAGTCCAAACCGGGTCTAAACCTTTATAAAGTTCCTTTGCT
*****************************************************************************...........((............(((...((((..(((((((.(((....))).))).))))....)))).)))..........))..************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................................................................................TGTGGTGCAGTTAAACAAAAGATGTGT....................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................................AGATGTGTTTGTCTAGTTTTATAAGT..................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................GGGTTTATCCTATCAATAAGACCAT.................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ATGTGTTTGTCTAGTTTTATA........................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AAGTCGACGAAACGAACAGGTAGAGAT................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................TATGGTTGGTATTGAAAACG................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTCGACGAAACGAACAGGTAGAGAT................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................ATATAATTGTATACTCTGATAGCTTACT............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................GGTGCAGTTAAACAAAAGATGTGT....................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTGGTGCAGTTAAACAAAAGATGTGT....................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AAAGATGTGTTTGTCTAGTTTTATAAGT..................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATACTCTGATAGCTTACTGTAGTCGCAT.................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GAACAGGTAGAGATTTGTGGTGCAGTT...................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TGTTAACGTTCAAGCTTCAGT................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................ATTATGGTTGGTATTGAAAACG................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................GTGCAGTTAAACAAAAGATGTGT....................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AAGATGTGTTTGTCTAGTTTTATAAGT..................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTGGTGCAGTTAAACAAAAGATGT......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CTAGTTTTATAAGTCCAAACCGGGT.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ACGACGAAACGAACAGGTAGAGATT.................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................CAAAAGATGTGGTTGTCCTGT.............................................. 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................AGGTAGAGATTTGTGGTGCAGTTA..................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........TCAAGCTTCAGTGTCATGGGTTTAT................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................AGGTTTTCTTAAATATAATTGTATAC.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AAGATGTGTTTGTCTAGTT............................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................AAGATGTGTTTGTCTAGTTTTAT......................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCAGTCGACGCAACGAACAGG.......................................................................................... 21 3 3 0.67 2 0 0 0 0 0 0 0 2 0
..........................................................................................................................................................................................................AGTCGACGCAACGAACAGGGT........................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1
.................................................................................................AAAATTGCTTCAGTATTGTTT................................................................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................AGAAGTGTTTGTATAGTT............................................. 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TAGCTTTCTGTAGTC...................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGTAGTGGACTAAACGAA.............................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11162540-11162850 + dsi_23567 TTACAATTGCAA-GTTCGAA--------------------GTCACAGTACCCAAATAGG-----ATAGTTATTCTGGTAAAATACATAAATAAATACCAACCATAACTTTTGCAAAA-GCTTTGTTTTAATGA------------------------------A---------------------------------------------------------------------------------------------------------TTCATAAAAAACTG----TA------------------------------------------------------------------------------------------------------------TTTTAAATTC-----CAAAA-GAATTTA----T----------------ATTAACATAT----GAG-ACTATCG-AATGACATCAGC-GTAGGCTATGCGATATTT-----------GTT-----TCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTT-----GTTTT-----CTACACAAACAGATCAAAATATTCAGGTTTGGCC-C-----AGATTT---GGAAATATTTCAAGG-AAA-CGA
droSec2 scaffold_2776:669-974 + TTACAATTGCAA-GTTCGAA--------------------GTCACAGTACCCAAATAGG-----ATAGTTATTCTGGTAAAATACATAAATAAATACCAACCATAACTTTTGCAAAAAGCTTTTTTTTAATGA------------------------------A---------------------------------------------------------------------------------------------------------TTCATAAAAAACTA----TA-------------------------------------------------------------------------------------------------------------------TTC-----CAAAA-GAATTTA----T----------------ATTAACATAT----GAG-ACTATCG-AATGACATCAGC-GTAGGCTATGCGATATTT-----------GTT-----TCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTTC--T--TTTT-----CTACACAAACAGATCAAAATATTCAGGTTTGGCC-C-----AGATTT---GGAAATATTTGAAGG-AAA-CGA
dm3 chrX:11782182-11782499 + TTACAATTGCAA-ATTCGAA--------------------GTCACAGTACCCAAATAGGAATACATAGTTATTCTGGTGAAATACATAAATAAATACCAACCATAACTTTTGCAAAA-GCTCTGTTTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAAAA-TG----TT------------------------------------------------------------------------------------------------------------TTTTAAATTC-----AAAAATGTATTTA----T----------------TTCAACATAT----GAG-ACTATC-----GACATCAGC-GTAGGCTATGCGATATTT-----------GTT--GTATCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTTT--TTTTTTT-----ATACACAAACAAATCAAAATATTCAGCTTCGGCC-C-----AGATCT---GGAAATATTTGAAAG-AAA-CAA
droEre2 scaffold_4690:3417142-3417373 - TAATAA-------GTACAAA--------------------GTCACAGTACCCAAAAAGAAATACATAGTTATTCTGGTGAAATACATAAATAAATACCAAGCATAACTTTTGCAAAA-ACGCTGTTTTAATAT------------------------------G---------------------------------------------------------------------------------------------------------TTCGTAAACAA-TGTGTGTT------------------------------------------------------------------------------------------------------------TTTCAAATTCAATTTAAA-----ATTTATC------------------------CATAC----ATG-ACTATCGGAATGACATCG-----------TGCGATATTT-----------GTT--GTATCATC-GCTGTTTTA---ATATGTTTCTAA-GCA--------ATGT-----GTTTT-----TT-----------------------------------------------------------------------
droYak3 X:14915293-14915622 - TTACAA-------GTTCAAA--------------------GTCACAGTACCCAAATA----TACATAGTAACTCTGGTGAAATACATAAATAAATACCAACCATTACTTTTGCAAAA-GCGCTGTTTTAATAA------------------------------G---------------------------------------------------------------------------------------------------------TTCCAAAACAA-TGTGTT---------------------------------------------------------------------------------------------------------------TTTTAATTC-----AAAT----ATTTATCCATTT--ATATGGATATTAATTAACATTTTTCAGTG-ACTATCG-AATGACATCAGC-GCAGGCTTTGCGATATTT-----------GT--TGTTTCATCAGCTGCTTTGTTTGTCCATCTCTAA-ACACCACGTCAATTTT--T-GTTTT-----GTACACAATCAGATCAAAAAATTAAGCTTTGGCC-C-----AGATTT---GGAAATATTTGAAAG-AAA-CAA
droEug1 scf7180000409008:1178775-1179105 + CAAT---TCAAA-GTACAAT--------------------GTAGCC-------------------------------TTAAATATATAAATAAAACCCAAGAAT--TTTGTGCAAAC-TTGCTGTTTACAATT------------------------------A-------------------------TTGCCTTACAAAG-------------------------------------------------------------------AATTAAAATTA-GGAGCA---------------AACTTAACTCAAGTTTCT----------------------------------------GTCATTTTGG---CGGAAAAATCATGACTAATGAAAATTTTAAATTG-----AAAAG-TGATTTC----T----------------ATT------------TGAATTATCG-GATGATGTCAGA-GTAGGTCAGTCGATATATTGTATTCGCTCG--CAGTAACATCAGCTGCTTCA---GTCCATCTCTAA-AAACCACGTCAAGTTT--T-GTTTT-----GTACACAATTT----CACAAATTAAATATCAGT-----------TTC---GG------------A-AAA-CAA
droBia1 scf7180000302126:551465-551676 + TGAAT--T----------------------------------------------------------------TCTAACTATTTATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAA--AAGAAAGATAAGCAAAAAACAGTG-ATTTTCG-GATGACATCAGT-GTAGGCTATGCGATATATT----TCCTATG--AAGT-GAATCAGCTGTTTTGT---TCCATCCCTAA--AACCACGTCAAGTGTATA-GTTTT-----GTATACAAATCG---TGTAAATTCAGGTCAGACC-C-----GGA-GA---GGAAATATTCCGGAA-AACCCAG
droTak1 scf7180000415169:157277-157629 - G-------------------------------------------------------------------TTATTCTGACGAAATGTTTAAATAAAAACCAGGACTAGCTTTTGCAAAA-ACCCTATTTTAATAC------------------------------AACCAGAAAGGATTTTTTTACATTTTCCGT-TAATATAAAGTTAAAATTTAAAAGTATCCTTAAAATGGTATTATGGTTGATTTGAAAATAAAACATAAAACTGGATTTATAGAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-ATTTTCG-AATGACATCACC-GCAGGCCAGCCGATAGTTGGTATTCGTTTG--TAGTAACATCAGCTGCTTTGTTCGCCCATCCCTAA-ACACCACGTCAAGTATATA-GTTTT-----GTATACAATCG----TAAAAATTTTGTTTCGGTT-A-----CGGATT---GGAAATATTTCAGGA-AATCGAC
droEle1 scf7180000491277:648315-648417 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCTGCTTGGCTTGGCCATCTCCAA--CACCACGTCAAGT----------T-----GTATACAAATT----TACAAATTTAGGCTGA-CCTGCCAGTACATTC---GGGAATATTTAC--A-AAA-CAA
droRho1 scf7180000763611:188445-188578 - GTACAATTTTAACATTCAAA--------------------GTAACAGTAACAA--TAGAAATATGTTGTTTTTCTGGTAAAATAAATAAATAAAAACCAACTATATATTTTGCAAGC-CACCTCTTTTAATGT------------------------------T---------------------------------------------------------------------------------------------------------TTTCCAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GAAAA-----------------------------------------------------------A-AATTGTA
droFic1 scf7180000454073:199062-199530 - TTACCAACAAAA-TAACGAAAACATATTTTTCTCTATGTTGTAACATTAGCCAGTTAAA-ATATAT-TTTATACTGGCAAAAATAATAAATAAAAATCAACAATATCTTTTGTAAGC-AACCAGTTTTAATATTTTTTTCAAACAAAACTGTCGTCAGAATGCGATCCTAAAAAACTTTTTCA--TTAA---------------------------------------------------------------------------------TCTTAAAAAAACA----AAATCGAAAAGTAAAAATTAAGCACAAGATTCTACTTTTATTTGCTTTTTAAATAAATTAATATAAAATGCAAGTCACTGCGGAAGTGGAAAAAT---------------TTTT-------------------------------------------------AGATTTAATAACA-ACTATCG-AATGACATCAGTAGTAAGCTATGCGATGTATTTCATTCGTTCG--AAGT-TCATCAGCTGGTCGGCTTGTGCGTCTCTAA--CACCACGTCAAGT--------TTT-----GTACACAATCA----CAAAAATTCAGTTTCGGTT-T-CTCAACCTCT---AGAAATAATTGATTA--AA-AGA
droKik1 scf7180000302344:868283-868365 + CGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-----------GTATAGC-AAATCAGCTGCTCAGCT--ACCATCTCTAA-ACACCACGTCAAGTTT--T-GT-GTATTTTGTAAACATTA----------------------------------------------------------A-TTA
droAna3 scaffold_12948:397892-397974 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTCATCTCTAATAAACCACGTCAAGT--------TTT-----GTATACAAACAG-T-CAGAAATTCAGC--------A-----AGATTA---GAAA--ATTACC--A-ATC-CCG
droBip1 scf7180000391426:18936-19027 + CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTCGTCCATCTCTAATAAACCACGTCAAGT--------TGT-----GTATACAAATAG--TAAAAAATCCAGC--------A-----ATATTAGAAGTAA--ATTTCC--AAAGCCAGA
dp5 XL_group1a:4784501-4784533 - TGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-C-----AGACTT---AGGTGCTTGTCTAGG-AGC-TGT
droWil2 scf2_1100000004909:1739676-1739691 - TAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAA-AAA-AGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTACAATTGCAA-GTTCGAA--------------------GTCACAGTACCCAAATAGG-----ATAGTTATTCTGGTAAAATACATAAATAAATACCAACCATAACTTTTGCAAAA-GCTTTGTTTTAATGA------------------------------A---------------------------------------------------------------------------------------------------------TTCATAAAAAACTG----TA------------------------------------------------------------------------------------------------------------TTTTAAATTC-----CAAAA-GAATTTA----T----------------ATTAACATAT----GAG-ACTATCG-AATGACATCAGC-GTAGGCTATGCGATATTT-----------GTT-----TCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTT-----GTTTT-----CTACACAAACAGATCAAAATATTCAGGTTTGGCC-C-----AGATTT---GGAAATATTTCAAGG-AAA-CGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............TTCGAA--------------------GTCACAGTACCCAAATAGG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26115.0015000000123000000000
TTACAATTGCAA-GTTCGAA--------------------GTCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400000020110000000
...............................................TACCCAAATAGG-----ATAGTTATTCTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300010001010000000
.......TGCAA-GTTCGAA--------------------GTCACAGTACCCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000021000000000
.TACAATTGCAA-GTTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
TTACAATTGCAA-GTTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000011000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCCATCTCTAA-ACACC..................................................................................................1912.00220000000000000000
...........A-GTTCGAA--------------------GTCACAGTACCCAAATAGG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000011000000000
.TACAATTGCAA-GTTCGAA--------------------GTCACAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..............TTCGAA--------------------GTCACAGTACCCAAATAGG-----ATAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.................................................CCCAAATAGG-----ATAGTTATTCTGGTAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTCTAA-ACACCACG...............................................................................................1811.00100001000000000000
................................................................ATAGTTATTCTGGTAAAATACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
..ACAATTGCAA-GTTCGAA--------------------GT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
...............TCGAA--------------------GTCACAGTACCCAAATAGG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................TAGG-----ATAGTTATTCTGGTAAAATACATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCAGGTTTGGCC-C-----AGAT............................2111.00100001000000000000
..........................................................................................TAAATACCAACCATAACTTTTGCAAAA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
..............TTCGAA--------------------GTCACAGTACCCAAATAGG-----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................................TAGG-----ATAGTTATTCTGGTAAAATACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..ACAATTGCAA-GTTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................A----T----------------ATTAACATAT----GAG-ACT.............................................................................................................................................................................................1811.00110000000000000000
........................................GTCACAGTACCCAAATAGG-----ATAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----CTACACAAACAGATCAA........................................................1811.00100001000000000000
..................................................CCAAATAGG-----ATAGTTATTCTGGTAAAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
...............................................TACCCAAATAGG-----ATAGTTATTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
......TTGCAA-GTTCGAA--------------------GTCACAGTACCCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.......................................................TAGG-----ATAGTTATTCTGGTAAAATACAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
....AATTGCAA-GTTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
................CGAA--------------------GTCACAGTACCCAAATAGG-----ATAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.......................................................................TTCTGGTAAAATACATAAATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
droSec2
TTACAATTGCAA-GTTCGAA--------------------GTCACAGTACCCAAATAGG-----ATAGTTATTCTGGTAAAATACATAAATAAATACCAACCATAACTTTTGCAAAAAGCTTTTTTTTAATGA------------------------------A---------------------------------------------------------------------------------------------------------TTCATAAAAAACTA----TA-------------------------------------------------------------------------------------------------------------------TTC-----CAAAA-GAATTTA----T----------------ATTAACATAT----GAG-ACTATCG-AATGACATCAGC-GTAGGCTATGCGATATTT-----------GTT-----TCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTTC--T--TTTT-----CTACACAAACAGATCAAAATATTCAGGTTTGGCC-C-----AGATTT---GGAAATATTTGAAGG-AAA-CGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......TGCAA-GTTCGAA--------------------GTCACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATCAAAATATTCAGGTTTGG.........................................2511.0010001
....................................................................................CATAAATAAATACCAACCATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
............................................CAGTACCCAAATAGG-----ATAGTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..............TTCGAA--------------------GTCACAGTACCCAAATAGG-----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGGTTTGGCC-C-----AGA.............................1811.0010010
dm3
TTACAATTGCAA-ATTCGAA--------------------GTCACAGTACCCAAATAGGAATACATAGTTATTCTGGTGAAATACATAAATAAATACCAACCATAACTTTTGCAAAA-GCTCTGTTTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAAAA-TG----TT------------------------------------------------------------------------------------------------------------TTTTAAATTC-----AAAAATGTATTTA----T----------------TTCAACATAT----GAG-ACTATC-----GACATCAGC-GTAGGCTATGCGATATTT-----------GTT--GTATCATCAGCTGCTTTGCTTGTCCATCTCTAA-ACACCACGTCAATTTT--TTTTTTT-----ATACACAAACAAATCAAAATATTCAGCTTCGGCC-C-----AGATCT---GGAAATATTTGAAAG-AAA-CAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................................................................................................................TTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAAAA-TG----TT------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCAAAATATTCAGCT.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..ACAATTGCAA-ATTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TACCCAAATAGGAATACATAGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................AGGAATACATAGTTATTCTGGTGAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TACATAAATAAATACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-C-----AGATCT---GGAAATATTTGAAAG-A......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AGATCT---GGAAATATTTGAAAG-.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAGTTATTCTGGTGAAATACATAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----GACATCAGC-GTAGGC.....................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AA-GCTCTGTTTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCAT..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGC-GTAGGCTATGCGATA............................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................TCTGGTGAAATACATAAATAAATACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCC-C-----AGATCT---GGAAATA................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................ACCCAAATAGGAATACATAGTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AAATACCAACCATAACTTTTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................AATACATAAATAAATACCAACCATAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TACATAAATAAATACCAACCATAACTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGCTTGTCCATCTCTAA-ACAC...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCTCTAA-ACACCACGTCAATTTT--.....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CAAATAGGAATACATAGTTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGTCCATCTCTAA-ACACCAC................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TATTCTGGTGAAATACATAAATAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTCAGCTTCGGCC-C-----AGATCT---.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGCAA-ATTCGAA--------------------GTCACAGTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............TTCGAA--------------------GTCACAGTACCCAAATAGGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAAAA-TG----TT------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGGTGAAATACATAAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-C-----AGATCT---GGAAATATTTGAAAG-AA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................ACTTTTGCAAAA-GCTCTGTTTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTTTTT-----ATACACAAACAA.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TAGTTATTCTGGTGAAATACATAAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGCAA-ATTCGAA--------------------GTCACAGTACCCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................ATACATAGTTATTCTGGTGAAATACATAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TACATAGTTATTCTGGTGAAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-C-----AGATCT---GGAAATAT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GTATCATCAGCTGCTTTGCTTT...................................................................................................................2411.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TACATAAATAAATACCAACCATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................ATACCAACCATAACTTTTGCAAAA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGCAA-ATTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AATTGCAA-ATTCGAA--------------------GTCACAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AATTGCAA-ATTCGAA--------------------GTCACAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------------------------------------TTTTAAATTC-----AAAAATGTATTTA----T----------------T.................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTA----T----------------TTCAACATAT----GAG-ACTATC-----GACAT................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCTGGTGAAATACATAAATAAATACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................ACCAACCATAACTTTTGCAAAA-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTCTGGTGAAATACATAAATAAATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----GACATCAGC-GTAGGCTA...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-ACTATC-----GACATCAGC-GTAGGCT....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................TTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAAAA-TG----.................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----GAG-ACTATC-----GACATCAGC-GT.........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTGGTGAAATACATAAATAAATACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCATCTCTAA-ACACCACGTCAAT..........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATATTCAGCTTCGGCC-C-----AGATC...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCTCTAA-ACACCACGTCAATTT........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TTCGAA--------------------GTCACAGTACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCTTCGGCC-C-----AGAT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACAATTGCAA-ATTCGAA--------------------GTCACAGTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................ACCAACCATAACTTTTGCAAAA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCTTCGGCC-C-----AGATCT---GGT....................2211.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA----T----------------TTCAACATAT----GAG-ACTATC-----GAC..................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTT-----------GTT--GTATCATCAGCTGCTTT........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GTCACAGTACCCAAATAGGAATACATAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATACATAAATAAATACCAACCATAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCATCTCTAA-ACACCACGTCAAT..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCTGGTGAAATACATAAATAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-ACTATC-----GACATCAGC-G..........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----GAG-ACTATC-----GACATCAGC-GTAGGCTA...................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTA----T----------------TTCAACATAT----GAG-ACTATC-----GAC..................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATTTA----T----------------TTCAACATAT----GAG-ACTA............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGTCCATCTCTAA-ACACCACGTC.............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................ACATAGTTATTCTGGTGAAATACATAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TGAAATACATAAATAAATACCAACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TATTCTGGTGAAATACATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TACCAACCATAACTTTTGCAAAA-GCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................ACATAAATAAATACCAACCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TACATAGTTATTCTGGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TACCAACCATAACTTTTGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTCTGGTGAAATACATAAATAAATACCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TACCAACCATAACTTTTGCAAAA-GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTTTAATGA------------------------------G---------------------------------------------------------------------------------------------------------TTCATAAAA..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACGTCAATTTT--TTTTTTT-----ATA......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CTGGTGAAATACATAAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TAAATAAATACCAACCATAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TAATAA-------GTACAAA--------------------GTCACAGTACCCAAAAAGAAATACATAGTTATTCTGGTGAAATACATAAATAAATACCAAGCATAACTTTTGCAAAA-ACGCTGTTTTAATAT------------------------------G---------------------------------------------------------------------------------------------------------TTCGTAAACAA-TGTGTGTT------------------------------------------------------------------------------------------------------------TTTCAAATTCAATTTAAA-----ATTTATC------------------------CATAC----ATG-ACTATCGGAATGACATCG-----------TGCGATATTT-----------GTT--GTATCATC-GCTGTTTTA---ATATGTTTCTAA-GCA--------ATGT-----GTTTT-----TT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................GTCACAGTACCCAAAAAGAAATACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...............ACAAA--------------------GTCACAGTACCCAAAAAGAAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
.............................................AGTACCCAAAAAGAAATACATAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................................................................CTGGTGAAATACATAAATAAATAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
TTACAA-------GTTCAAA--------------------GTCACAGTACCCAAATA----TACATAGTAACTCTGGTGAAATACATAAATAAATACCAACCATTACTTTTGCAAAA-GCGCTGTTTTAATAA------------------------------G---------------------------------------------------------------------------------------------------------TTCCAAAACAA-TGTGTT---------------------------------------------------------------------------------------------------------------TTTTAATTC-----AAAT----ATTTATCCATTT--ATATGGATATTAATTAACATTTTTCAGTG-ACTATCG-AATGACATCAGC-GCAGGCTTTGCGATATTT-----------GT--TGTTTCATCAGCTGCTTTGTTTGTCCATCTCTAA-ACACCACGTCAATTTT--T-GTTTT-----GTACACAATCAGATCAAAAAATTAAGCTTTGGCC-C-----AGATTT---GGAAATATTTGAAAG-AAA-CAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................ATAAATACCAACCATTACTTTTGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.................AAA--------------------GTCACAGTACCCAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................GTACCCAAATA----TACATAGTAACTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEug1
CAAT---TCAAA-GTACAAT--------------------GTAGCC-------------------------------TTAAATATATAAATAAAACCCAAGAAT--TTTGTGCAAAC-TTGCTGTTTACAATT------------------------------A-------------------------TTGCCTTACAAAG-------------------------------------------------------------------AATTAAAATTA-GGAGCA---------------AACTTAACTCAAGTTTCT----------------------------------------GTCATTTTGG---CGGAAAAATCATGACTAATGAAAATTTTAAATTG-----AAAAG-TGATTTC----T----------------ATT------------TGAATTATCG-GATGATGTCAGA-GTAGGTCAGTCGATATATTGTATTCGCTCG--CAGTAACATCAGCTGCTTCA---GTCCATCTCTAA-AAACCACGTCAAGTTT--T-GTTTT-----GTACACAATTT----CACAAATTAAATATCAGT-----------TTC---GG------------A-AAA-CAASizeHit CountTotal NormTotal
No Reads
droBia1
TGAAT--T----------------------------------------------------------------TCTAACTATTTATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAA--AAGAAAGATAAGCAAAAAACAGTG-ATTTTCG-GATGACATCAGT-GTAGGCTATGCGATATATT----TCCTATG--AAGT-GAATCAGCTGTTTTGT---TCCATCCCTAA--AACCACGTCAAGTGTATA-GTTTT-----GTATACAAATCG---TGTAAATTCAGGTCAGACC-C-----GGA-GA---GGAAATATTCCGGAA-AACCCAGSizeHit CountTotal NormTotal
No Reads
droTak1
G-------------------------------------------------------------------TTATTCTGACGAAATGTTTAAATAAAAACCAGGACTAGCTTTTGCAAAA-ACCCTATTTTAATAC------------------------------AACCAGAAAGGATTTTTTTACATTTTCCGT-TAATATAAAGTTAAAATTTAAAAGTATCCTTAAAATGGTATTATGGTTGATTTGAAAATAAAACATAAAACTGGATTTATAGAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTG-ATTTTCG-AATGACATCACC-GCAGGCCAGCCGATAGTTGGTATTCGTTTG--TAGTAACATCAGCTGCTTTGTTCGCCCATCCCTAA-ACACCACGTCAAGTATATA-GTTTT-----GTATACAATCG----TAAAAATTTTGTTTCGGTT-A-----CGGATT---GGAAATATTTCAGGA-AATCGACSizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGCTGCTTGGCTTGGCCATCTCCAA--CACCACGTCAAGT----------T-----GTATACAAATT----TACAAATTTAGGCTGA-CCTGCCAGTACATTC---GGGAATATTTAC--A-AAA-CAASizeHit CountTotal NormTotal
No Reads
droRho1
GTACAATTTTAACATTCAAA--------------------GTAACAGTAACAA--TAGAAATATGTTGTTTTTCTGGTAAAATAAATAAATAAAAACCAACTATATATTTTGCAAGC-CACCTCTTTTAATGT------------------------------T---------------------------------------------------------------------------------------------------------TTTCCAAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GAAAA-----------------------------------------------------------A-AATTGTASizeHit CountTotal NormTotal
No Reads
droFic1
TTACCAACAAAA-TAACGAAAACATATTTTTCTCTATGTTGTAACATTAGCCAGTTAAA-ATATAT-TTTATACTGGCAAAAATAATAAATAAAAATCAACAATATCTTTTGTAAGC-AACCAGTTTTAATATTTTTTTCAAACAAAACTGTCGTCAGAATGCGATCCTAAAAAACTTTTTCA--TTAA---------------------------------------------------------------------------------TCTTAAAAAAACA----AAATCGAAAAGTAAAAATTAAGCACAAGATTCTACTTTTATTTGCTTTTTAAATAAATTAATATAAAATGCAAGTCACTGCGGAAGTGGAAAAAT---------------TTTT-------------------------------------------------AGATTTAATAACA-ACTATCG-AATGACATCAGTAGTAAGCTATGCGATGTATTTCATTCGTTCG--AAGT-TCATCAGCTGGTCGGCTTGTGCGTCTCTAA--CACCACGTCAAGT--------TTT-----GTACACAATCA----CAAAAATTCAGTTTCGGTT-T-CTCAACCTCT---AGAAATAATTGATTA--AA-AGASizeHit CountTotal NormTotal
No Reads
droKik1
CGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTT-----------GTATAGC-AAATCAGCTGCTCAGCT--ACCATCTCTAA-ACACCACGTCAAGTTT--T-GT-GTATTTTGTAAACATTA----------------------------------------------------------A-TTASizeHit CountTotal NormTotal
No Reads
droAna3
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTCATCTCTAATAAACCACGTCAAGT--------TTT-----GTATACAAACAG-T-CAGAAATTCAGC--------A-----AGATTA---GAAA--ATTACC--A-ATC-CCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTCGTCCATCTCTAATAAACCACGTCAAGT--------TGT-----GTATACAAATAG--TAAAAAATCCAGC--------A-----ATATTAGAAGTAA--ATTTCC--AAAGCCAGASizeHit CountTotal NormTotal
No Reads
dp5
TGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-C-----AGACTT---AGGTGCTTGTCTAGG-AGC-TGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTT---AGGTGCTTGTCTAGG-AGC-T..2411.0010100000000
droWil2
TAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAA-AAA-AGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads

Generated: 05/18/2015 at 09:45 PM