dsi_23556

CDS [2l_12088513_12088891_-]; three_prime_UTR [2l_12088477_12088512_-]; exon [2l_12088477_12088891_-]; three_prime_UTR [2l_12088306_12088388_-]; exon [2l_12088306_12088388_-]; intron [2l_12088389_12088476_-]

##################################################----------------------------------------------------------------------------------------################################################## GTAGTCGCTCCTAGATATCGACGTCACGTTCCAACTAGTGGAAGTGCGAGGTGAGTTCATATCAAGTTCCGCTTCAGAAAAAGCTACATACCTTTGTTAAATAGGGACTCTTTTAACTAGTATTTCTTTTAATTCCAGATGTGACTCGCTGACTAGGGCCGATGCCGTATCCTGTTCCGGATATGTGG ************************************************..............((((((.........((((........))))........)))))).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553486 Makindu_3 day-old ovaries	M024 male body	M023 head	M053 female body	O002 Head	O001 Testis	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................GATGTGACTCGCTGACTAGGGCC............................	23	0	1	3.00	3	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................CGAGATGTGACTCGCTGACTAGGGC.............................	25	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................AATTCCAGATGTGACTCGCTG.....................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........CCTAGATATCGACGTCACGTTC.............................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................CTCGCTGACTAGGGCCGATGCC......................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................TGTGACTCGCTGACTAGGGCCGAT.........................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................ATTCCAGATGTGACTCGCTGAC...................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................TGTGACTCGCTGACTAGGGCCGATGCCGTA...................	30	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATGCCGTATCCTGTTCCGGA.......	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........TAGATATCGACGTCACGT...............................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................GACTCGCTGACTAGGGCC............................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.TAGTCGCTCCTAGATATCGAC......................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................TGCCGTATCCTGTTCCGGTTT.....	21	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........CTAGATATCGACGTCACGT...............................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................AGTATTTCTTTTAATTCC....................................................	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................GTTCCAACTAGTGGAAGTGCGA...........................................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................CTATGCCGTATTCTGTTCCC.........	20	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................TGTGACGCGCTGACGA.................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	0	1

CATCAGCGAGGATCTATAGCTGCAGTGCAAGGTTGATCACCTTCACGCTCCACTCAAGTATAGTTCAAGGCGAAGTCTTTTTCGATGTATGGAAACAATTTATCCCTGAGAAAATTGATCATAAAGAAAATTAAGGTCTACACTGAGCGACTGATCCCGGCTACGGCATAGGACAAGGCCTATACACC ************************************************..............((((((.........((((........))))........)))))).............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries
..........GATCTATAGCTGCAGTGCAAG.............................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0
..................................................................................................................................................GCGACTGATCCCGGCTACGGCAT...................	23	0	1	1.00	1	0	0	0	0	0	1	0	0
...................TTGCAGTGCAAGGTTGATCAC....................................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
....TGCGAGGATCTATAGCTGCAGT..................................................................................................................................................................	22	1	1	1.00	1	0	0	0	1	0	0	0	0
............................................................................................................................................................CCGGCTACGGCATAGGACAAGGCCT.......	25	0	1	1.00	1	0	0	1	0	0	0	0	0
................................................TCCACTCAAGTATAGTTCAAG.......................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
......CGAGGATCTATAGCTGCAGTGCAAGGTT..........................................................................................................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0
....AGCGAGGATCTATAGCTGCAGT..................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................CCCGGCTACGGCATAGGACAA............	21	0	1	1.00	1	0	0	0	0	1	0	0	0
.........GGATCTATAGCTGCAGTGCAAG.............................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	1	0
.................................................................................TGGATGTATGGTAACAACTTA......................................................................................	21	3	4	0.25	1	0	0	0	0	0	0	0	1
...........................................................................................................................AAAAAAATTAAGGTTTACACTT...........................................	22	3	9	0.11	1	0	0	0	0	0	0	0	1
.....................................................TGAAGTATAGTTCAA........................................................................................................................	15	1	15	0.07	1	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:12088339-12088526 -	dsi_23556	GTAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAA-CTAGTGG-AAGTGCGA----GGTGAGTTCATAT-CAAGTTCCGCTTCAGAAAA-AGCTAC-----------------------------------------------------------------------------------------------------------------ATA-----CCTT-TGTTAAATAGGG-----ACTCTTTTA--AC--------TAGT---ATTT-----C-TT---T-TAATTCCAG------ATGTGACTCGCTGACTAGGG-------CC-------GATGCCGTATCCTGTTCCGGA--TATG-TGG----
droSec2	scaffold_16:622443-622630 -		GTAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAA-CTAGTGG-AAGTGCGA----GGTGAGTTCATAT-CAAGTTCCGCTTCAGAAAA-AGCTAC-----------------------------------------------------------------------------------------------------------------ATA-----CCTTA-GTTAAATAGGG-----ACTCTTTTA--AC--------TAGT---TTTT-----C-TT---T-TAATTCCAG------ATGTGACTCGCTGACTAGGG-------CC-------GATGCCGTATCCTGTTCCGGA--TATG-TGG----
dm3	chr2L:12432155-12432358 -		GCAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAT-TTAGTGG-GAGTGCGA----GGTGAGTTCATAT-CGTGTAACGCTTCAGAAAA-AGCTTTATATAAGGTTAA--------------------------------------------A-----------------------------------------------------C--ATA-----CCTTACGTTAAATAGGG-----ATTATTTTAAAAC--------TAGT---TGTT-----C--T---T-TGCTTTCAG------ATATGACTCGCTGACTAGGG-------CC-------AATGCTGTATCCTGTTCCGGA--TCTA-TGG----
droEre2	scaffold_4929:12984266-12984445 +		GCAGTCGCTCCTAGATATCGA----------------CTTAACGTTCCAA-CTAGTGG-GAGTGCGA----GGTGAGTTCATAT-CAAGATACGCTTAAAAAAA-TGTTAA-----------------------------------------------------------------------------------------------------------------GTATTA--CATTACGTTAAATGGGG-----ACT-------------------------TTTT-----C-TT---T-TGCTTCCAG------ATATGACTCGCTGACTAGGC-------CG-------GATTTGGTATCCTGTTCCGGA--TCTG-TGG----
droYak3	2L:8868541-8868745 -		GCAGTCGCTCCTAGATATCGA----------------CGTAACGTTCCAA-CTTGTGG-GAGTGCGA----GGTGAGTTTATAT-GAAGATACTCTTCCAAAAA-TGCTACATATTAAGTAAA--------------------------------------------A-----------------------------------------------------C--ATA-----CATTATGTTAAGTAAGG-----ATTATATTAAAAT--------TATT---ATTT-----C-TT---C-TGCTTCCAG------ATGTGACTCGCTGACTAGGC-------CG-------GATTCCGAATTCTGTTCCGGA--TCTG-TGG----
droEug1	scf7180000409122:818713-818925 -		GCAGCCGATCTTAAATATCTA----------------TGAAACGTTCCAA-CTTTTAG-AAGTGCGA----GGTAAAGTGAAAT-ATATA--------------G------------------T----ATGATATAACTTTACTTCTGTGGCATTGTCAAATCTATAATGCC----------------TAA--------------------------------------------TACGTATCATAAGA-----TGTATTCTAACTC--------TAGT---TA-------TTTA---T-TTTTTCCAG------ATATCGCTCGTTGACAAAGC-------CC-------GATTACGTCTCCACGGACGGG--TCTG-TGG----
droBia1	scf7180000302422:539287-539444 +		GCAGCCGCTCCTAAACATCGA----------------AGAAACGTTCCAT-CTTGTGG-GAGAGCGA----GGTGGGTTGAACA-CAA------------------------------------------------------------------------------------------------TCCCCCT-------------------------------------------------------------TA----TATTTATTCC-----------CCATTTT-----ATTTTGCTTCGTTTATAG------GTATGGCTCGCTGACAAAGC-------CA-------CATT-CGTCTCCTGTGCCGGA--TCTG-TGG----
droTak1	scf7180000415865:163776-163939 +		GCAGCCGCTCCTAAACATCGA----------------AGAAACGTTCCAT-CTTTTGA-GAGTGCGA----GGTGAGATAAAGC-CGAAA--------------T------------------A---------------------------------------TTTTACCGT----------------AAC-------------------------------------------------------------TT----TCTTAAAAC--------CATT---CTTT-----ATTT---T-GTTTTACAG------ATATGGCTCGCTGACAAAGC-------CC-------GTTTCCGCCGCCTGTGCCGGA--TCTG-TGG----
droEle1	scf7180000491028:2681654-2681856 +		GCAGTCGCTCCTAAATATGAC----------------AAAAACGTTCCAT-CATGTTA-GAGTGCGA----GGTGGGTTATCAA-ACG-----------------TGCTCGTTA---------ACTTC------CATTAAGAGT--CGAAGGACATT----------------------------------TTA-AAACAGTGGTCGGTACGGTATAAAACAT----------------------------------------------------ACAA---ATTT-----CTTC---T-TCATTCCAG------ATATGGCTCGCTGACAAAGC-------CA-------GATTCCGACTCCTGTTAAGGA--TCTG-TGG----
droRho1	scf7180000780043:291824-291888 -		TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T-TCATTACAG------AAATGGCTCGCTGACAAAGC-------CC-------GATTTCGATTCCTGTTACGAA--TCTG-TGG----
droFic1	scf7180000454015:317438-317647 -		GCAGTCGCTCCTAAACATCGA----------------A-ATACGTTCCAT-CTTGTAA-GAGTGCGA----GGTGAGTAGATAT-ACAGTAATCCTACCACAAA-------------------------------------ACT--CGGAGTATTGT----------------------------------TTAAAT------------------TGAGAGC--ACACCTGC--TTGTGTTA------------ATTATTTCAACAT--------CGGA---ATTT-----CTTC---T-ACATTTCAG------ATATGACGCGCTGACAATGC-------CC-------GTTTCCGATTGCTGTGCCGGATATCTG-CGG----
droKik1	scf7180000302472:788164-788338 -		GCAGTCGCTCCTAAATGAAGA--------------AATAATACGTTCCAA-CATGTGGAGAGTGCGA----GGTGAGTTTTCAG-TGT------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGTTGG-CT----------AT--AC-TTATTACAAGA----T--AACTT--TT---C-CCTATTTAG------ATATGGCTCGCTGACAAGGC-------CCACTTTTTGATTCCGATCCAAAAACCGGA--TACGATGGGCTT
droAna3	scaffold_12916:12961511-12961670 +		GCAGCGGCTCCTAAATAAGAT---------------TAAAAACGTTCCAA-CTTGTGG-AAGTGCGA----GGTAAATAAT-------------------------------------------------------------------------------------------GAAATT-------------ATA-GCG-----------------------------------------------AGGG-----AATCACCAA--TC------------TTATTA-AACTT--TC---T-CTTTTTCAG------ACATTTCTCGCTGACAAAGC-------CG-------GATTCCGTTACCTTATCCGGA--TCCG-TGG----
droBip1	scf7180000396580:563732-563899 -		GCAGCGGCTCCTAAATAAGAT----------------TAAAACGTTCCAA-T-TGTGG-AAGTGCGA----GGTAAGCAAT-------------------------------------------------------------------------------------------AGCATT-------------TTA-ATAAAGTACTTCCTATTTATTTAAATTT----------------------------------------------------TTAA---AC--AACTT--CC---G-TTTTTTCAG------ACGTTTCTCGCTGACAAAGC-------CG-------GATTCCGTTGCCGTGTCCGGA--TCCG-TGG----
dp5	4_group3:3117403-3117555 -		GTAGTCGCTCTTAATTATCC---------------------ACGTTCCAA-TTG-------GTGCGA----GGTGAGTGCGAAAT---------------------------------------------------------------------------------------GGCTTTAATGGATGGAATT-------------------------------------------------------------TA----TCTTTAATCC-----------GTATTC-A----TCTT---T-GTTTTGCAGT-----TTTTTACTCGCTCACAAGACAGAGATCCC-------GATCATGGATCTTGCTCCA----------------
droPer2	scaffold_1:4600190-4600342 -		GTAGTCGCTCTTAATTATCC---------------------ACGTTCCAA-TTG-------GTGCGA----GGTGAGTGCGAAAT---------------------------------------------------------------------------------------GGCTTTAATGGATGGAATT-------------------------------------------------------------TA----TCTTTAATCC-----------GTATTC-A----TCTT---T-GTTTTGCAGT-----TTTTTACTCGCTCACAAGACAGAGATCCC-------GATCATGGATCTTGCTCCA----------------
droWil2	scf2_1100000004521:10181658-10181830 -		GCAGTCGCTCGTAGGTGGCTGCCACCGGCTTGTGTAAAAAAACGTTCCAG-ATA-AAC-TAAAGCGT----GGTAAGTTGTT----------------------------------------------------------------------------------------------TAAGTAAATGCAGT-------------------------------------------------------CGG-ATGT------------TCCTTATTGTCATCT--TTTT-----GTGT---T-TTCTTTCAG------ATTTTTCACGCTGACAAGGC-------TT-------AAATC-G----CTGCTCCAGC---TTC-TAA----
droVir3	scaffold_13246:1620738-1620901 -		GCAGTCGTTCCTAAAGACGCC-----GGCTCGCT---TCAGACGTTCCATACTCGTGG-GGGTGCGATAA-GGTGAGCGCCAGG-TGGAA--------------T------------------A---------------------------------------TTTAACTGT----------------TAA-------------TCTGTTCA--------------------------ATTAAATA-----------------------------T-GT---C---------------C-TTTTTTTAGCCTTGAATTTGACTCGTGGACAAGGG-------T----------------------TTCCGGG--CAGG-TGC----
droMoj3	scaffold_6500:4295054-4295229 +		GCAGTCGTTCCTAAAAATGCT------GCTCGCT---TCAGACGTTCCATACTTTTA---CGTACGAAAAGGGTGAGTACAAAT-CTATA--------------G------------------A--------------------------TTTATGT----------------------------------TTTAAT------------------TATAAATATATAATAGT--TTGTGACA------------TTC-------------------------AA---------TT---C-GATTTGCAGCCTT--AATTGACTCGTGGACAACGG-------TA-------TAT------------CCAGGA--AAAC-CCG----
droGri2	scaffold_15252:15613315-15613329 +		GCAGTCGTTCTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAA-CTAGTGG-AAGTGCGA----GGTGAGTTCATAT-CAAGTTCCGCTTCAGAAAA-AGCTAC-----------------------------------------------------------------------------------------------------------------ATA-----CCTT-TGTTAAATAGGG-----ACTCTTTTA--AC--------TAGT---ATTT-----C-TT---T-TAATTCCAG------ATGTGACTCGCTGACTAGGG-------CC-------GATGCCGTATCCTGTTCCGGA--TATG-TGG----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................................................G------ATGTGACTCGCTGACTAGGG-------CC-------...................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AATTCCAG------ATGTGACTCGCTG..........................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CCTAGATATCGA----------------CGTCACGTTC...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................CTCGCTGACTAGGG-------CC-------GATGCC.............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGTGACTCGCTGACTAGGG-------CC-------GAT................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATTCCAG------ATGTGACTCGCTGAC........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGTGACTCGCTGACTAGGG-------CC-------GATGCCGTA..........................	30	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATGCCGTATCCTGTTCCGGA--............	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TAGATATCGA----------------CGTCACGT.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................GACTCGCTGACTAGGG-------CC-------...................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TAGTCGCTCCTAGATATCGA----------------C............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTAGATATCGA----------------CGTCACGT.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGT---ATTT-----C-TT---T-TAATTCC...............................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GTTCCAA-CTAGTGG-AAGTGCGA----...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GTAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAA-CTAGTGG-AAGTGCGA----GGTGAGTTCATAT-CAAGTTCCGCTTCAGAAAA-AGCTAC-----------------------------------------------------------------------------------------------------------------ATA-----CCTTA-GTTAAATAGGG-----ACTCTTTTA--AC--------TAGT---TTTT-----C-TT---T-TAATTCCAG------ATGTGACTCGCTGACTAGGG-------CC-------GATGCCGTATCCTGTTCCGGA--TATG-TGG----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................C-------GATGCCGTATCCTGTTCCGGA--............	22	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................................................................................................................................TGTGACTCGCTGACTAGGG-------CC-------G..................................	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................CTAGGG-------CC-------GATGCCGTATCCT......................	21	1	1.00	1	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................ATGTGACTCGCTGACTAGGG-------C...........................................	21	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................ATGCCGTATCCTGTTCCGGA--T...........	21	1	1.00	1	0	0	1	0

dm3

GCAGTCGCTCCTAGATATCGA----------------CGTCACGTTCCAT-TTAGTGG-GAGTGCGA----GGTGAGTTCATAT-CGTGTAACGCTTCAGAAAA-AGCTTTATATAAGGTTAA--------------------------------------------A-----------------------------------------------------C--ATA-----CCTTACGTTAAATAGGG-----ATTATTTTAAAAC--------TAGT---TGTT-----C--T---T-TGCTTTCAG------ATATGACTCGCTGACTAGGG-------CC-------AATGCTGTATCCTGTTCCGGA--TCTA-TGG----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................ATATGACTCGCTGACTAGGG-------C...........................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0
.........CCTAGATATCGA----------------CGTCACGTT....................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0
............................................................................................................................................................................................................................................................................................................................TATGACTCGCTGACTAGGG-------CC-------...................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ATGACTCGCTGACTAGGG-------C...........................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AT-TTAGTGG-GAGTGCGA----G..........................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GACTAGGG-------CC-------AATGCTGT...........................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TATGACTCGCTGACTAGGG-------CC-------AATGC..............................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TATCCTGTTCCGGA--TCTA-TGG----	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GCTGTATCCTGTTCCGGA--............	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CGCTGACTAGGG-------CC-------AATGC..............................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CC-------AATGCTGTATCCTGTTCCG................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AATGCTGTATCCTGTTCCGG...............	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................C-------AATGCTGTATCCTGTTCCGG...............	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CCTAGATATCGA----------------CGTCACGTTCCAT-T..............................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AATGCTGTATCCTGTTCCGGA--............	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AATGCTGTATCCTGTTCCGGA--T...........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TAGT---TGTT-----C--T---T-TGCTTTCAG------.......................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................ATGCTGTATCCTGTTCCGGA--T...........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................T-TTAGTGG-GAGTGCGA----GGTGA......................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATGCTGTATCCTGTTCCGGA--TC..........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................ATGCTGTATCCTGTTCCGGA--TCTA-.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................G------ATATGACTCGCTGACTAGGG-------............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTGG-GAGTGCGA----GGTGAGT....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TGACTCGCTGACTAGGG-------CA-------TC.................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCAGTCGCTCCTAGATATCGA----------------CTTAACGTTCCAA-CTAGTGG-GAGTGCGA----GGTGAGTTCATAT-CAAGATACGCTTAAAAAAA-TGTTAA-----------------------------------------------------------------------------------------------------------------GTATTA--CATTACGTTAAATGGGG-----ACT-------------------------TTTT-----C-TT---T-TGCTTCCAG------ATATGACTCGCTGACTAGGC-------CG-------GATTTGGTATCCTGTTCCGGA--TCTG-TGG----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................G------ATATGACTCGCTGACTAGGC-------CG-------GAT................................	26	1	2.00	2	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................ATATGACTCGCTGACTAGGC-------CG-------GA.................................	24	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................ATGACTCGCTGACTAGGC-------C...........................................	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................CTGACTAGGC-------CG-------GATTTGGTA..........................	21	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATATGACTCGCTGACTAGGC-------CG-------G..................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................G------ATATGACTCGCTGACTAGGC-------CG-------GA.................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................GG-----ACT-------------------------TTTT-----C-TT---T-TGCTTCCAG------.......................................................................	22	1	1.00	1	1	0	0	0	0	0	0

droYak3

GCAGTCGCTCCTAGATATCGA----------------CGTAACGTTCCAA-CTTGTGG-GAGTGCGA----GGTGAGTTTATAT-GAAGATACTCTTCCAAAAA-TGCTACATATTAAGTAAA--------------------------------------------A-----------------------------------------------------C--ATA-----CATTATGTTAAGTAAGG-----ATTATATTAAAAT--------TATT---ATTT-----C-TT---C-TGCTTCCAG------ATGTGACTCGCTGACTAGGC-------CG-------GATTCCGAATTCTGTTCCGGA--TCTG-TGG----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................G------ATGTGACTCGCTGACTAGGC-------CG-------GATTCCGA...........................	31	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
......................................................................................................................................................................................................................................................................................................................................TGACTAGGC-------CG-------GATTCCGA...........................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................GA----------------CGTAACGTTCCAA-CTTGTGG-G......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................GTTCCAA-CTTGTGG-GAGTGC.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................ATCGA----------------CGTAACGTTCCAA-CTTGTGG-GAGT...................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................CCAA-CTTGTGG-GAGTGCGA----G..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.................TCGA----------------CGTAACGTTCCAA-CTTG...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...GTCGCTCCTAGATATCGA----------------C............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AATTCTGTTCCGGA--TCTG-C......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

GCAGCCGATCTTAAATATCTA----------------TGAAACGTTCCAA-CTTTTAG-AAGTGCGA----GGTAAAGTGAAAT-ATATA--------------G------------------T----ATGATATAACTTTACTTCTGTGGCATTGTCAAATCTATAATGCC----------------TAA--------------------------------------------TACGTATCATAAGA-----TGTATTCTAACTC--------TAGT---TA-------TTTA---T-TTTTTCCAG------ATATCGCTCGTTGACAAAGC-------CC-------GATTACGTCTCCACGGACGGG--TCTG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAGCCGCTCCTAAACATCGA----------------AGAAACGTTCCAT-CTTGTGG-GAGAGCGA----GGTGGGTTGAACA-CAA------------------------------------------------------------------------------------------------TCCCCCT-------------------------------------------------------------TA----TATTTATTCC-----------CCATTTT-----ATTTTGCTTCGTTTATAG------GTATGGCTCGCTGACAAAGC-------CA-------CATT-CGTCTCCTGTGCCGGA--TCTG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCAGCCGCTCCTAAACATCGA----------------AGAAACGTTCCAT-CTTTTGA-GAGTGCGA----GGTGAGATAAAGC-CGAAA--------------T------------------A---------------------------------------TTTTACCGT----------------AAC-------------------------------------------------------------TT----TCTTAAAAC--------CATT---CTTT-----ATTT---T-GTTTTACAG------ATATGGCTCGCTGACAAAGC-------CC-------GTTTCCGCCGCCTGTGCCGGA--TCTG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCAGTCGCTCCTAAATATGAC----------------AAAAACGTTCCAT-CATGTTA-GAGTGCGA----GGTGGGTTATCAA-ACG-----------------TGCTCGTTA---------ACTTC------CATTAAGAGT--CGAAGGACATT----------------------------------TTA-AAACAGTGGTCGGTACGGTATAAAACAT----------------------------------------------------ACAA---ATTT-----CTTC---T-TCATTCCAG------ATATGGCTCGCTGACAAAGC-------CA-------GATTCCGACTCCTGTTAAGGA--TCTG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---T-TCATTACAG------AAATGGCTCGCTGACAAAGC-------CC-------GATTTCGATTCCTGTTACGAA--TCTG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCAGTCGCTCCTAAACATCGA----------------A-ATACGTTCCAT-CTTGTAA-GAGTGCGA----GGTGAGTAGATAT-ACAGTAATCCTACCACAAA-------------------------------------ACT--CGGAGTATTGT----------------------------------TTAAAT------------------TGAGAGC--ACACCTGC--TTGTGTTA------------ATTATTTCAACAT--------CGGA---ATTT-----CTTC---T-ACATTTCAG------ATATGACGCGCTGACAATGC-------CC-------GTTTCCGATTGCTGTGCCGGATATCTG-CGG----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAGTCGCTCCTAAATGAAGA--------------AATAATACGTTCCAA-CATGTGGAGAGTGCGA----GGTGAGTTTTCAG-TGT------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAGTTGG-CT----------AT--AC-TTATTACAAGA----T--AACTT--TT---C-CCTATTTAG------ATATGGCTCGCTGACAAGGC-------CCACTTTTTGATTCCGATCCAAAAACCGGA--TACGATGGGCTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCAGCGGCTCCTAAATAAGAT---------------TAAAAACGTTCCAA-CTTGTGG-AAGTGCGA----GGTAAATAAT-------------------------------------------------------------------------------------------GAAATT-------------ATA-GCG-----------------------------------------------AGGG-----AATCACCAA--TC------------TTATTA-AACTT--TC---T-CTTTTTCAG------ACATTTCTCGCTGACAAAGC-------CG-------GATTCCGTTACCTTATCCGGA--TCCG-TGG----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................TAAAAACGTTCCAA-CTTGTGG-A......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................GTTCCAA-CTTGTGG-AAGTGCGA----G..........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................TGACAAAGC-------CG-------GATTCCGTTACCT......................	24	1	1.00	1	0	1	0	0	0	0
...........................................GTTCCAA-CTTGTGG-AAGTGCGA----...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........................................GTTCCAA-CTTGTGG-AAGTGCGA----GA.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TTCTCGCTGACAAAGC-------CG-------GATTCCG............................	25	1	1.00	1	1	0	0	0	0	0

droBip1

GCAGCGGCTCCTAAATAAGAT----------------TAAAACGTTCCAA-T-TGTGG-AAGTGCGA----GGTAAGCAAT-------------------------------------------------------------------------------------------AGCATT-------------TTA-ATAAAGTACTTCCTATTTATTTAAATTT----------------------------------------------------TTAA---AC--AACTT--CC---G-TTTTTTCAG------ACGTTTCTCGCTGACAAAGC-------CG-------GATTCCGTTGCCGTGTCCGGA--TCCG-TGG----	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTAGTCGCTCTTAATTATCC---------------------ACGTTCCAA-TTG-------GTGCGA----GGTGAGTGCGAAAT---------------------------------------------------------------------------------------GGCTTTAATGGATGGAATT-------------------------------------------------------------TA----TCTTTAATCC-----------GTATTC-A----TCTT---T-GTTTTGCAGT-----TTTTTACTCGCTCACAAGACAGAGATCCC-------GATCATGGATCTTGCTCCA----------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............TATCC---------------------ACGTTCCAA-TTG-------GTGCGA----GT.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAAGACAGAGATCCC-------GATCAT.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....CGCTCTTAATTATCC---------------------ACGTTC...................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................TCCC-------GATCATGGATCTTGCTC..................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CTCACAAGACAGAGATCCC-------GATCA..............................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CTTAATTATCC---------------------ACGTTCCAA-TTG-------GTGCGA----...........................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AGACAGAGATCCC-------GATCATGG...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................CACAAGACAGAGATCCC-------GAT................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................TTTTTACTCGCTCACAAGACAGAG...............................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................ACTCGCTCACAAGACAGAG...............................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................ATCC---------------------ACGTTCCAA-TTG-------GTGCGA----G..........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GTAGTCGCTCTTAATTATCC---------------------ACGTTCCAA-TTG-------GTGCGA----GGTGAGTGCGAAAT---------------------------------------------------------------------------------------GGCTTTAATGGATGGAATT-------------------------------------------------------------TA----TCTTTAATCC-----------GTATTC-A----TCTT---T-GTTTTGCAGT-----TTTTTACTCGCTCACAAGACAGAGATCCC-------GATCATGGATCTTGCTCCA----------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................GT-----TTTTTACTCGCTCACAAG.....................................................	20	1	1.00	1	1	0	0	0	0	0
................ATCC---------------------ACGTTCCAA-TTG-------GTGCGA----...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAAGACAGAGATCCC-------GATC...............................	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................CCC-------GATCATGGATCTTGCTC..................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AGACAGAGATCCC-------GATCATG............................	20	1	1.00	1	0	0	0	0	0	1

droWil2

GCAGTCGCTCGTAGGTGGCTGCCACCGGCTTGTGTAAAAAAACGTTCCAG-ATA-AAC-TAAAGCGT----GGTAAGTTGTT----------------------------------------------------------------------------------------------TAAGTAAATGCAGT-------------------------------------------------------CGG-ATGT------------TCCTTATTGTCATCT--TTTT-----GTGT---T-TTCTTTCAG------ATTTTTCACGCTGACAAGGC-------TT-------AAATC-G----CTGCTCCAGC---TTC-TAA----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................GTTCCAG-ATA-AAC-TAAAGCGT----...........................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	1	5	0
...GTCGCTCGTAGGTGGCTGC............................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	2	0
.................................................................................T----------------------------------------------------------------------------------------------TAAGTAAATGCAGT-------------------------------------------------------CGG-ATGT------------.........................................................................................................................	22	1	2.00	2	0	0	0	2	0
................................................................................TT----------------------------------------------------------------------------------------------TAAGTAAATGCAGT-------------------------------------------------------CGG-ATG......................................................................................................................................	22	1	2.00	2	0	0	0	2	0
...........................................GTTCCAG-ATA-AAC-TAAAGC.................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................AACGTTCCAG-ATA-AAC-TAAAG..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................ATTTTTCACGCTGACAAG.....................................................	18	1	1.00	1	0	0	0	1	0
.............................................TCCAG-ATA-AAC-TAAAGCGT----...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................CTTGTGTAAAAAAACGTTCCAG-AT.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
GCAGTCGCTCGTAGGTGGCTG.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
............................................TTCCAG-ATA-AAC-TAAAGCGT----...........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................TAAGTAAATGCAGT-------------------------------------------------------CGG-ATGT------------T........................................................................................................................	22	1	1.00	1	0	0	0	1	0
..AGTCGCTCGTAGGTGGCTGCCACCGGCTT...................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................ATCT--TTTT-----GTGT---T-TTCTTTCAG------.......................................................................	22	1	1.00	1	0	0	0	1	0

droVir3

GCAGTCGTTCCTAAAGACGCC-----GGCTCGCT---TCAGACGTTCCATACTCGTGG-GGGTGCGATAA-GGTGAGCGCCAGG-TGGAA--------------T------------------A---------------------------------------TTTAACTGT----------------TAA-------------TCTGTTCA--------------------------ATTAAATA-----------------------------T-GT---C---------------C-TTTTTTTAGCCTTGAATTTGACTCGTGGACAAGGG-------T----------------------TTCCGGG--CAGG-TGC----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......TTCCTAAAGACGCC-----GGCT....................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................CCATACTCGTGG-GGGTGCGATAA-GC.........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................CGTGGACAAGGG-------T----------------------TTCCGGG--CA..........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CGTGGACAAGGG-------T----------------------TTCCGGG--C...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................GAATTTGACTCGTGGACAAG.....................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGACGTTCCATACTCGTGG-GGGT...................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AAGGG-------T----------------------TTCCGGG--CAGG-T......	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGACGTTCCATACTCGTGG-GG.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GTGGACAAGGG-------T----------------------TTCCGGG--CAT.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGACGTTCCATACTCGTGG-GGGTGC.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

GCAGTCGTTCCTAAAAATGCT------GCTCGCT---TCAGACGTTCCATACTTTTA---CGTACGAAAAGGGTGAGTACAAAT-CTATA--------------G------------------A--------------------------TTTATGT----------------------------------TTTAAT------------------TATAAATATATAATAGT--TTGTGACA------------TTC-------------------------AA---------TT---C-GATTTGCAGCCTT--AATTGACTCGTGGACAACGG-------TA-------TAT------------CCAGGA--AAAC-CCG----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

GCAGTCGTTCTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_23556

2l:12088389-12088476 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-8.0	-7.9	-7.7