dsi_23555

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAACGTAAGCCGCATATACCAACGATGGTGTGGAGGTTACCTCTGATGTACGATCCTTCTTTTGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAATCGGATCGGGTCAGC ************************************************...((((...(((((((....)))))))..))))........((((.((....))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
...............GTCCTTCCGCATTGCCGGCGATCC............................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................TTACCCAATCGGATCGGGTCAGC	23	0	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................GGACATTACCCAATCGGAT.........	19	0	1	1.00	1	1	0	0	0	0	0
...............................GGCGATCCGAAACCAAAA..................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
..................CTTCCAGATTGCCGGCGCTCC............................................................................................................................	21	3	2	1.00	2	0	0	0	2	0	0
.................................................................CAACGATGGTGTGGGCGTT...............................................................................	19	2	3	0.33	1	0	0	0	0	0	1
...............................................................................................ACGATCCTTCTTTTAGA...................................................	17	2	6	0.33	2	0	0	0	0	2	0

ACTAGGGAAGAGCGACAGGAAGGCGTAACGGCCGCTAGGCTTTGGTTTTGCATTCGGCGTATATGGTTGCTACCACACCTCCAATGGAGACTACATGCTAGGAAGAAAACGTCACTGGAAGTACTTCCCGTGCTTCCTGTAATGGGTTAGCCTAGCCCAGTCG ************************************************...((((...(((((((....)))))))..))))........((((.((....))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
......................GCGTAGGGGACGCTAGGCTTT........................................................................................................................	21	3	7	0.14	1	1	0
.........................................................CGTATATGGTGGCTACGAA.......................................................................................	19	3	19	0.11	2	0	2
....................................................................................................................GGAAGTACTACCCGTCC..............................	17	2	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:12517910-12518072 -	dsi_23555	TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAACGTAAGCCGCATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGAGGTTACCTC-----TGATGTA-CGATC----------CTT-CT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAATCGGATCGGGTCAGC
droSec2	scaffold_1:9347835-9347997 -		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAACGTAAGCCGGATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGAGGTAACCTC-----TGATGTA-CGATC----------CTT-GT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTCAGC
dm3	chr2R:11847873-11848035 -		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAGCGTAAGCCGGATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GTAGGTAACTTC-----TGATGTA-CGATT----------CTT-GT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAATCGGATCGGGTCAGC
droEre2	scaffold_4845:14010010-14010172 +		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAGCCAAAGCGTAAGCGGGATATA-CCACAA-AGTGGTG--------------------------------------------------------------G-GGA-GTAACATC-----TGATGTA-TGATC----------CTT-GT-CT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTCAGC
droYak3	2R:17134139-17134301 +		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAGCGTAAGCGGCATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGA-GTAACAGC-----TGATGTA-TGGTCC---------TTG-TT-TT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTGAGC
droEug1	scf7180000409672:758660-758822 -		TGATCCCTTCTCGCTGTCCTTCCGTATTGCCGGCGACCCGAAACCAAAGCGTAAGCGGGAGTTA-CTT--CCTCTGATG--------------------------------------------------------------T-GGA-GTTACTTC-----TTAAATG-GTATTA---------TTT-AT-TT--TGCAGTTACCTTCATGAAGGGCACGAAGGACATTACCACGTCCGATCGTGTCAGC
droBia1	scf7180000302292:2022605-2022766 -		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCGAAGCGTAAGCGGGAT-TA-CCA--TA------------------------------------------------------------CCCT-TATCT-GGA-GTGATATC-----TTATATG-GATTC----------TGT-GT-CT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGACCGGGTCAGC
droTak1	scf7180000415795:713748-713909 +		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCCAAGCGTAAGCAGGACTAA-CCT--CTTTT--------------------------------------------------------------CAAAT-GAA-GTAACTTC-----TAATAAG-GGATC----------TCT-AT-TT--TGCAGTCACCTTCATGAAGGGCACCAAGGACATTACCCAGTCGGATCGGGTCAGC
droEle1	scf7180000491107:852309-852462 -		TGATCCGTTCTCACTGTCCTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGTGAAAGTTTCCCA--AC--TGATT--------------------------------------------------------------T-GGA-GTAGACGC-----TA-------AATT----------CT--CC-TT--CACAGTCACCTTTATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC
droRho1	scf7180000779911:248843-249003 +		TGATCCCTTCTCCCTGTCCTTCCGCATTGCCGGCGAACCGAAACCAAAGCGTAAGTGGGGAAGT-TTA--TCT-------------------------------------------------------------CT-CAAAT-GAG-GTTACTCC-----TAATGTA-TAACT----------CT--CC-CC--CACAGTCACCTTCATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC
droFic1	scf7180000453948:1098593-1098751 -		TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCAAAACCAAAGCGTAAGTAGA-----------------------------------------------------------------TCCCCT---TTT-TAAAT--AG-GT-ACTTTTT---TAATAGGGCAATC----------CTT-AC-TC--CACAGTCACCTTCATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC
droKik1	scf7180000302385:1079827-1079981 -		TGATCCGTTCTCTTTATCTTTCCGCATTGGCGGGGATCCGAAACCGAAGCGTAAGTCGCTGAAT-CTG--TCA-----GT----CG------------------------------------------------CTGTAA-T-CTCTGTAACCT------------------C----------T-GTTC-TT--TTTAGTCACATTCATGAAGGGCACCAAGGACATCACTCAGTCGGACCGGGTCAGC
droAna3	scaffold_13266:11876957-11877116 +		TGATCCGTTCTCGCTCTCCTTCCGCATTGCTGGCGATCCGAAACCTAAGCGTAAGTTAAAGATT-CCG--CG--------------------------------------------------------------CTCTAATTCG-A-AAAC---------CAATTCGGGAACT----------CTTGTC-TT--CGCAGTGACCTTTATGAAGGGCACCAAGGACATCACCCAATCCGACCGCGTCAGC
droBip1	scf7180000396547:600554-600715 -		AGATCCGTTCTCGCTCTCCTTCCGCATTGCTGGCGATCCGAAACCCAAGCGTAAGTAAAGGTTT-CCG--CG-------------------------------------------CGT-----------------TCTAGCTCG-A-AAAT---------CAATATGGGAATT----------CTCGTC-TC--CGCAGTGACCTTTATGAAGGGCACCAAGGACATCACCCAATCCGACCGCGTCAGC
dp5	3:18978077-18978252 +		TGATCCCTTCTCGTTTGCGTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGCGATTG-------------------------------------------CTCATTGCGTGTGTTTGGGATCCCCATTC--------------CTACT-----AAT------TA-TATCATTCGATTGCCTC-AT-GT--TTCAGTCACGTTCATGAAGGGCACCAAGGACATTACCCAATCGGATCGGGTCAGC
droPer2	scaffold_242:9780-9955 +		TGATCCCTTCTCGTTTGCGTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGCGATTG-------------------------------------------CTCATTGCGTGTGTTTGGGATCCCCATTC--------------CTACT-----AAT------TA-TATCATTCGATTGCCTC-AT-GT--TTCAGTCACGTTCATGAAGGGCACCAAGGACATCACCCAATCGGATCGGGTCAGC
droWil2	scf2_1100000004558:864449-864615 -		TGATCCGTTCTCCATATCTTTCCGCATTGCAGGCGATCCGAAACCGAAGCGTAAGTCCAA-----------A--TGAAGTCGATAGGCAGA---------------------------------TGAATC---ATT-TAAGT--CA-TT-GATTTTT---T------------------------GATC-TTTAAATAGTCACCTTTATGAAAGGCACTAAGGACATTACCCAATCGGATAAGGTCAGC
droVir3	scaffold_12875:17282763-17282922 -		TGATCCGTTCTCGTTGTCCTTCCGCATTGCGGGTGATCCGAAACCGAAGCGTAAGATA----TT-CCA--AA------------------------------------CTCC-------------------------TCGTTTG-C-TTATCAAT-----TTAATTA-TGTTG----------TTT-ATCCT--TGCAGTTGTGTTCATGAAGGGCACCAAGGATATAACCCAATCGGATCGCGTTAGC
droMoj3	scaffold_6496:10727699-10727856 +		TGATCCGTTCTCGATTTCCTTCCGTATTGCGGGTGATCCGAAACCGAAACGTAAGTTT----TC-CCA--AT------------ATGCATATCCTCTGCAGCTTCTCATTTCGT----TT-----------------------------------------------------------------GGTA-TT--CGCAGTGGTGTTCATGAAGGGCACCAAGGATATTACCCAATCGGATCGGGTCAGC
droGri2	scaffold_15245:16798283-16798341 -		C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TT--TTTAGTGATGTTCATGAAGGGCACCAAGGATGTTACCCAATCGGATCGCGTTAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAACGTAAGCCGCATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGAGGTTACCTC-----TGATGTA-CGATC----------CTT-CT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAATCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............GTCCTTCCGCATTGCCGGCGATCC..................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTACCCAATCGGATCGGGTCAGC	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAATCGGAT.........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GGCGATCCGAAACCAAAA........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAACGTAAGCCGGATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGAGGTAACCTC-----TGATGTA-CGATC----------CTT-GT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.GATCCCTTCTCGCTGTCCTTCCGCA...............................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
........TCTCGCTGTCCTTCCGCATTGCCGG........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...................TTCCGCATTGCCGGCGATCC..................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................CCCAGTCGGATCGGGTCAGC	20	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAGTCGGATCGGGTCA..	28	1	1.00	1	1	0	0	0
.........CTCGCTGTCCTTCCGCATTGCC..........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................CTTCATGAAGGGCACGAAGGACA.......................	23	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................TTACCCAGTCGGATCGGGTCA..	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................GAAGGGCACGAAGGACATTG....................	20	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAGTCGGATCGGGT....	26	1	1.00	1	0	1	0	0
.....................CCGCATTGCCGGCGATCCGAAACCAA..........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
....................TCCGCATTGCCGGCGATCCGAAACCA...........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................TGAAGGGCACGAAGGACA.......................	18	1	1.00	1	0	0	0	1
........................................................................................................................................................................................................GACCTTCATGAAGGGCACGAAGGACA.......................	26	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................CATTACCCAGTCGGATCGGGT....	21	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................................GACATTACCCAGTCGGATCGGGT....	23	1	1.00	1	0	0	0	1
.........................................................................................................................................................................................................ACCTTCATGAAGGGCACGAAGGACA.......................	25	1	1.00	1	1	0	0	0
.................CCTTCCGCATTGCCGGCGATCCGAAACCA...........................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................ATTACCCAGTCGGATCGGGTCAG.	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................AGGGCACGAAGGACATTACCC.................	21	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................................CATGAAGGGCACGAAGGACATTACC..................	25	1	1.00	1	0	1	0	0

dm3

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAGCGTAAGCCGGATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GTAGGTAACTTC-----TGATGTA-CGATT----------CTT-GT-TT--TGCAGTGACCTTCATGAAGGGCACGAAGGACATTACCCAATCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................TGAAGGGCACGAAGGACA.......................	18	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ACCCAATCGGATCGGGTCAGC	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................TACCCAATCGGATCGGGT....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGGCGATCCGAAACCAAAGCT......................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTTCCGCATTGCCGGCGATCC..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGCCGGCGATCCGAAAC.............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATTGCCGGCGATCCGAAACCAAAGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACGAAGGACA.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCGCATTGCCGGCGATCC..................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CCTTCATGAAGGGCACGAAGGACAT......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TTCATGAAGGGCACGAAATC.........................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAGCCAAAGCGTAAGCGGGATATA-CCACAA-AGTGGTG--------------------------------------------------------------G-GGA-GTAACATC-----TGATGTA-TGATC----------CTT-GT-CT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................TCATGAAGGGCACGAAGGACA.......................	21	1	2.00	2	1	0	0	0	1	0	0
................................................................................................................................................................................................................TGAAGGGCACGAAGGACATT.....................	20	1	2.00	2	0	0	0	0	0	2	0
............................................................................................................................................................................................................TTCATGAAGGGCACGAAGGACATTACCC.................	28	1	1.00	1	0	0	0	0	1	0	0
......CTTCTCGCTGTCCTTCCGCATTGCCGGC.......................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...........CGCTGTCCTTCCGCATTGCCGGCG......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACGAAGGACA.......................	18	1	1.00	1	0	0	0	0	1	0	0
.GATCCCTTCTCGCTGTCCTTCA..................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
............GCTGTCCTTCCGCATTGCCGGCGA.....................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACGAAGGACA.......................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................TC-----TGATGTA-TGATC----------CTT-GT-CT--TGCA...................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................GCATTGCCGGCGATCCGAAG..............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................TACCCAGTCGGATCGGGTCAGC	22	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................TTCATGAAGGGCACGAAGGACA.......................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACGAAGGACATTA....................	23	1	1.00	1	0	0	0	0	1	0	0
...........................TGCCGGCGATCCGAAGCCAAAGCT......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACGAAGGACATTACCC.................	22	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................TGAAGGGCACGAAGGACATTACCC.................	24	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGGCACGAAGGACATTACC..................	22	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAGTCGGATCGGGTC...	25	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................CCTTCATGAAGGGCACGA.............................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................AGGGCACGAAGGACATTACC..................	20	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................TCATGAAGGGCACGAAGGACATTACCCA................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACGAAGGACATTAC...................	24	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................ATGAAGGGCACGAAGGACATTACCCA................	26	1	1.00	1	1	0	0	0	0	0	0
....................TCCGCATTGCCGGCGATCCGAAGCCA...........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................GCATTGCCGGCGATCCGA................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
...TCCCTTCTCGCTGTCCTTCC..................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
........................CATTGCCGGCGATCCGAAGCC............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACGAAGGA.........................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCAAAGCGTAAGCGGCATATA-CCA--ACGATGGTG--------------------------------------------------------------T-GGA-GTAACAGC-----TGATGTA-TGGTCC---------TTG-TT-TT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGATCGGGTGAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................CCCAGTCGGATCGGGTGAGC	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.............................................................................................................................................................................................................TCATGAAGGGCACGAAGGACA.......................	21	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
..........................TTGCCGGCGATCCGAAACCAA..........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TCTCGCTGTCCTTCCGCATTGCCGGC.......................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AGGACATTACCCAGTCGGATCGGG.....	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................CGCATTGCCGGCGATCCGAAA..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TTACCCAGTCGGATCGGGTGAGC	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACGAAGGACATTACCC.................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................TTCATGAAGGGCACGAAGGACA.......................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAGTCGGATCG.......	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGATCCCTTCTCGCTGTCCTTCCGTATTGCCGGCGACCCGAAACCAAAGCGTAAGCGGGAGTTA-CTT--CCTCTGATG--------------------------------------------------------------T-GGA-GTTACTTC-----TTAAATG-GTATTA---------TTT-AT-TT--TGCAGTTACCTTCATGAAGGGCACGAAGGACATTACCACGTCCGATCGTGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCGAAGCGTAAGCGGGAT-TA-CCA--TA------------------------------------------------------------CCCT-TATCT-GGA-GTGATATC-----TTATATG-GATTC----------TGT-GT-CT--TGCAGTCACCTTCATGAAGGGCACGAAGGACATTACCCAGTCGGACCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCGAAACCCAAGCGTAAGCAGGACTAA-CCT--CTTTT--------------------------------------------------------------CAAAT-GAA-GTAACTTC-----TAATAAG-GGATC----------TCT-AT-TT--TGCAGTCACCTTCATGAAGGGCACCAAGGACATTACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGATCCGTTCTCACTGTCCTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGTGAAAGTTTCCCA--AC--TGATT--------------------------------------------------------------T-GGA-GTAGACGC-----TA-------AATT----------CT--CC-TT--CACAGTCACCTTTATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGATCCCTTCTCCCTGTCCTTCCGCATTGCCGGCGAACCGAAACCAAAGCGTAAGTGGGGAAGT-TTA--TCT-------------------------------------------------------------CT-CAAAT-GAG-GTTACTCC-----TAATGTA-TAACT----------CT--CC-CC--CACAGTCACCTTCATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGATCCCTTCTCGCTGTCCTTCCGCATTGCCGGCGATCCAAAACCAAAGCGTAAGTAGA-----------------------------------------------------------------TCCCCT---TTT-TAAAT--AG-GT-ACTTTTT---TAATAGGGCAATC----------CTT-AC-TC--CACAGTCACCTTCATGAAGGGCACGAAGGACATCACCCAGTCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGATCCGTTCTCTTTATCTTTCCGCATTGGCGGGGATCCGAAACCGAAGCGTAAGTCGCTGAAT-CTG--TCA-----GT----CG------------------------------------------------CTGTAA-T-CTCTGTAACCT------------------C----------T-GTTC-TT--TTTAGTCACATTCATGAAGGGCACCAAGGACATCACTCAGTCGGACCGGGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGATCCGTTCTCGCTCTCCTTCCGCATTGCTGGCGATCCGAAACCTAAGCGTAAGTTAAAGATT-CCG--CG--------------------------------------------------------------CTCTAATTCG-A-AAAC---------CAATTCGGGAACT----------CTTGTC-TT--CGCAGTGACCTTTATGAAGGGCACCAAGGACATCACCCAATCCGACCGCGTCAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........CGCTCTCCTTCCGCATTGCTGGCGATCC..................................................................................................................................................................................................................	28	1	6.00	6	4	0	0	0	0	2
..........................TTGCTGGCGATCCGAAACC............................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	1	3
......GTTCTCGCTCTCCTTCCGCA...............................................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
..........................TTGCTGGCGATCCGAAACCT...........................................................................................................................................................................................................	20	1	3.00	3	1	0	0	0	1	1
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATCACC..................	23	1	3.00	3	0	0	0	0	0	3
.....................................................................................................................................................................................................................GGCACCAAGGACATCACCCA................	20	1	3.00	3	0	0	0	0	0	3
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACATCACCC.................	25	1	3.00	3	0	0	0	0	0	3
.......................................................................................................................................................................................................TGACCTTTATGAAGGGCACC..............................	20	1	3.00	3	0	0	0	1	0	2
..............................................................................................................................................................................................................................GACATCACCCAATCCGACCGCGTCAGC	27	1	3.00	3	0	0	0	0	1	2
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATCACCCA................	25	1	3.00	3	0	0	0	0	0	3
...........CGCTCTCCTTCCGCATTGCTGGCGATC...................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACATCACCCA................	26	1	2.00	2	0	0	0	0	1	1
...............CTCCTTCCGCATTGCTGGCGATCC..................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	1	1
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATCACCC.................	24	1	2.00	2	0	0	0	0	0	2
.....CGTTCTCGCTCTCCTTCCGCA...............................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................TTATGAAGGGCACCAAGGACATCA....................	24	1	2.00	2	1	0	0	0	1	0
.......................GCATTGCTGGCGATCCGAA...............................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
......GTTCTCGCTCTCCTTCCGCATTGC...........................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
............................................................................................................................................................................................................TTTATGAAGGGCACCAAGGACATCACCC.................	28	1	2.00	2	2	0	0	0	0	0
.......................GCATTGCTGGCGATCCGAAACCTAAGCT......................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................GGGCACCAAGGACATCACCCA................	21	1	2.00	2	2	0	0	0	0	0
............GCTCTCCTTCCGCATTGCTGGCGATCC..................................................................................................................................................................................................................	27	1	2.00	2	1	0	0	0	0	1
...................................................................................................................................................................................................................AGGGCACCAAGGACATCACCCA................	22	1	2.00	2	0	0	0	0	0	2
......GTTCTCGCTCTCCTTCCGC................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........TCGCTCTCCTTCCGCATTGCTGGCGATCC..................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
...............................GGCGATCCGAAACCTAAGCT......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.........CTCGCTCTCCTTCCGCATTGCT..........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TATGAAGGGCACCAAGGACATCACCC.................	26	1	1.00	1	1	0	0	0	0	0
...............CTCCTTCCGCATTGCTGGCGATCCGAA...............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATCACCCAATCCGACCGCGTCA..	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TATGAAGGGCACCAAGGACATCACCCA................	27	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................TTTATGAAGGGCACCAAGGACATCACCCA................	29	1	1.00	1	1	0	0	0	0	0
.........................ATTGCTGGCGATCCGAAAC.............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..ATCCGTTCTCGCTCTCCTTCCGC................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................CATCACCCAATCCGACCGCGTCA..	23	1	1.00	1	1	0	0	0	0	0
............................GCTGGCGATCCGAAACCTAAGC.......................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................AGGGCACCAAGGACATCACCC.................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................ACCCAATCCGACCGCGTCAG.	20	1	1.00	1	1	0	0	0	0	0
..............TCTCCTTCCGCATTGCTGGCGATCCGA................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
......GTTCTCGCTCTCCTTCCGCATTGCTGGCG......................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATC.....................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................AAGGGCACCAAGGACATCACC..................	21	1	1.00	1	0	0	0	0	0	1
...............CTCCTTCCGCATTGCTGGCGATCCGAAA..............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.................CCTTCCGCATTGCTGGCGATCCGAAAC.............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........CTCGCTCTCCTTCCGCATTGCTGGCGATC...................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGGCACCAAGGACATCACCC.................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATCACCCAATC.............	28	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................CCCAATCCGACCGCGTCAGC	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGACATCACCC.................	22	1	1.00	1	0	0	0	0	0	1
.....................CCGCATTGCTGGCGATCCGA................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................CACCAAGGACATCACCCAATCCGACCGC......	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................TTATGAAGGGCACCAAGGACA.......................	21	1	1.00	1	1	0	0	0	0	0
.........................ATTGCTGGCGATCCGAAACCT...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................GACATCACCCAATCCGACCGCGTC...	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................GACATCACCCAATCCGACCGCGTCA..	25	1	1.00	1	0	0	0	1	0	0
..........................TTGCTGGCGATCCGAAACCTAAGCT......................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......GTTCTCGCTCTCCTTCCGCAT..............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.GATCCGTTCTCGCTCTCCTTCC..................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATCACCCAATCC............	18	1	1.00	1	1	0	0	0	0	0
.....CGTTCTCGCTCTCCTTCCGCATTGCTG.........................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................TTCCGCATTGCTGGCGATCCG.................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGACATCACCCAATC.............	26	1	1.00	1	0	0	0	0	0	1
..................CTTCCGCATTGCTGGCGATCCG.................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................TTCCGCATTGCTGGCGATC...................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................TTCCGCATTGCTGGCGATCCGAAACC............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................ATTGCTGGCGATCCGAAACCTAAGC.......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..........TCGCTCTCCTTCCGCATTGC...........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................GGGCACCAAGGACATCACCC.................	20	1	1.00	1	1	0	0	0	0	0
............GCTCTCCTTCCGCATTGCTG.........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................TATGAAGGGCACCAAGGACATC.....................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................AGGACATCACCCAATCCGACCGCGTCA..	27	1	1.00	1	0	0	0	0	0	1
...................TTCCGCATTGCTGGCGATCCGA................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.......................GCATTGCTGGCGATCCGAAACC............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................TCCGCATTGCTGGCGATCCGAA...............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................GACCTTTATGAAGGGCACCAAGGAC........................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................ATCACCCAATCCGACCGCGTCA..	22	1	1.00	1	1	0	0	0	0	0
................TCCTTCCGCATTGCTGGCGATCCGA................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......GTTCTCGCTCTCCTTCCGCATTG............................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGGCACCAAGGACAT......................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................AGGGCACCAAGGACATCACC..................	20	1	1.00	1	0	0	0	0	0	1
.......................GCATTGCTGGCGATCCGAAA..............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................GCATTGCTGGCGATCCGAAACCT...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........TCTCGCTCTCCTTCCGCATTGCTGGCG......................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGACATCACCCA................	23	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................TTATGAAGGGCACCAAGGACATCACCCA................	28	1	1.00	1	0	0	0	0	0	1
....................TCCGCATTGCTGGCGATCCGAAACC............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............GCTCTCCTTCCGCATTGCT..........................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....CCGTTCTCGCTCTCCTTCCGCATTGCT..........................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGGCACCAAGGACATCACCCA................	24	1	1.00	1	1	0	0	0	0	0
...TCCGTTCTCGCTCTCCTTCCG.................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATCACCCAATCCGACCGCG.....	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................TTATGAAGGGCACCAAGGACATC.....................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACATC.....................	21	1	1.00	1	1	0	0	0	0	0

droBip1

AGATCCGTTCTCGCTCTCCTTCCGCATTGCTGGCGATCCGAAACCCAAGCGTAAGTAAAGGTTT-CCG--CG-------------------------------------------CGT-----------------TCTAGCTCG-A-AAAT---------CAATATGGGAATT----------CTCGTC-TC--CGCAGTGACCTTTATGAAGGGCACCAAGGACATCACCCAATCCGACCGCGTCAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGATCCCTTCTCGTTTGCGTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGCGATTG-------------------------------------------CTCATTGCGTGTGTTTGGGATCCCCATTC--------------CTACT-----AAT------TA-TATCATTCGATTGCCTC-AT-GT--TTCAGTCACGTTCATGAAGGGCACCAAGGACATTACCCAATCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................CGTATTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACCAAGGACATC.....................	22	1	2.00	2	0	0	0	1	0	0	1	0	0	0
.......................................................................................................................................................................................................TCACGTTCATGAAGGGCACCAAGGACA.......................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................TATTGCCGGCGAACCGAAACCA...........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACA.......................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACCAAGGACA.......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGAC........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................ATTGCCGGCGAACCGAAAC.............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............TTGCGTTCCGTATTGCCGGCGAACC..................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACATC.....................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
TGATCCCTTCTCGTTTGCGTT....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TATTGCCGGCGAACCGAAAC.............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GTTCCGTATTGCCGGCGAACC..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........CGTTTGCGTTCCGTATTGCCGGCGAA....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................GCGTTCCGTATTGCCGGCG......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAA............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GATCCCTTCTCGTTTGCGTTCC..................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............TTTGCGTTCCGTATTGCC..........................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................TTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............TGCGTTCCGTATTGCCGGCGAAC...................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............TTGCGTTCCGTATTGCCGGCG......................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................GTATTGCCGGCGAACCGAA...............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGACA.......................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGACAT......................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................GCGTTCCGTATTGCCGGCGAA....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CATGAAGGGCACCAAGGAC........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............TTTGCGTTCCGTATTGCCGGCGA.....................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GTTTGCGTTCCGTATTGCCGGCGAACC..................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGACATC.....................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........CTCGTTTGCGTTCCGTATT.............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............GTTTGCGTTCCGTATTGCCGGC.......................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................GTATTGCCGGCGAACCGAAAC.............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................CGTTCCGTATTGCCGGCGAACCG.................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................GTATTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................TTCCGTATTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............GTTTGCGTTCCGTATTGCC..........................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................GTATTGCCGGCGAACCGAAACCA...........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........CTCGTTTGCGTTCCGTATTGCCGGCG......................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CACGTTCATGAAGGGCACCAAGGA.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGACATC.....................	18	3	0.33	1	0	0	0	0	0	1	0	0	0	0

droPer2

TGATCCCTTCTCGTTTGCGTTCCGTATTGCCGGCGAACCGAAACCAAAGCGTAAGCGATTG-------------------------------------------CTCATTGCGTGTGTTTGGGATCCCCATTC--------------CTACT-----AAT------TA-TATCATTCGATTGCCTC-AT-GT--TTCAGTCACGTTCATGAAGGGCACCAAGGACATCACCCAATCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGACA.......................	19	1	2.00	2	0	0	0	0	0	2
............GTTTGCGTTCCGTATTGCCGGCG......................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................GTATTGCCGGCGAACCGAA...............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................AAGGACATCACCCAATCGGATCGGGTC...	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................GACATCACCCAATCGGATCG.......	20	1	1.00	1	0	1	0	0	0	0
...............TGCGTTCCGTATTGCCGGCGAACC..................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................GACATCACCCAATCGGATCGGGTCA..	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAAGGACATCACC..................	28	1	1.00	1	0	0	0	0	0	1
...............TGCGTTCCGTATTGCCGGCGAAC...................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................TTCATGAAGGGCACCAAGGACATC.....................	24	1	1.00	1	0	0	0	0	0	1
..........................TTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................AGGACATCACCCAATCGGATCGGGTCA..	27	1	1.00	1	0	1	0	0	0	0
.......................GTATTGCCGGCGAACCGAAA..............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................ATCACCCAATCGGATCGGGTCA..	22	1	1.00	1	0	1	0	0	0	0
.............TTTGCGTTCCGTATTGCCGGCGAAC...................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TCACGTTCATGAAGGGCACCA.............................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................CGTTCATGAAGGGCACCA.............................	18	1	1.00	1	0	1	0	0	0	0
.......................GTATTGCCGGCGAACCGAAACC............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droWil2

TGATCCGTTCTCCATATCTTTCCGCATTGCAGGCGATCCGAAACCGAAGCGTAAGTCCAA-----------A--TGAAGTCGATAGGCAGA---------------------------------TGAATC---ATT-TAAGT--CA-TT-GATTTTT---T------------------------GATC-TTTAAATAGTCACCTTTATGAAAGGCACTAAGGACATTACCCAATCGGATAAGGTCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................CTTTATGAAAGGCACTAAGGACATTACC..................	28	1	9.00	9	9	0	0	0	0
...........................................................................................................................................................................................................CTTTATGAAAGGCACTAAGGACATTACCC.................	29	1	4.00	4	3	1	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAATCGGAT.........	21	1	3.00	3	3	0	0	0	0
...................................................................................................................................................................................................................................TACCCAATCGGATAAGGTC...	19	1	3.00	3	2	0	1	0	0
..................................................................................................................................................................................................................................TTACCCAATCGGATAAGGTC...	20	1	3.00	3	3	0	0	0	0
...................................................................................................................................................................................................................AAGGCACTAAGGACATTACCC.................	21	1	3.00	3	3	0	0	0	0
..............................................................................................................................................................................................................................GACATTACCCAATCGGAT.........	18	1	3.00	3	3	0	0	0	0
..................................................................................................................................................................................................................................TTACCCAATCGGATAAGGT....	19	1	2.00	2	2	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAATCGGATAAG......	24	1	2.00	2	2	0	0	0	0
...................................................................................................................................................................................................................AAGGCACTAAGGACATTACC..................	20	1	2.00	2	2	0	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAATCGGATA........	20	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................TCACCTTTATGAAAGGCACTAAGGAC........................	26	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................TTTATGAAAGGCACTAAGGACA.......................	22	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................ATTACCCAATCGGATAAGGTC...	21	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAATCGGATAAGGTC...	25	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................GACATTACCCAATCGGATA........	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAATCGGA..........	20	1	1.00	1	1	0	0	0	0
...........................TGCAGGCGATCCGAAACCGA..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.....CGTTCTCCATATCTTTCCGCATTGC...........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
..............TATCTTTCCGCATTGCAGGCG......................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................TTTATGAAAGGCACTAAGGAC........................	21	1	1.00	1	1	0	0	0	0
.................CTTTCCGCATTGCAGGCGATCCGA................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................GGACATTACCCAATCGGAT.........	19	1	1.00	1	1	0	0	0	0
............CATATCTTTCCGCATTGCAGGCGATCCG.................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
......GTTCTCCATATCTTTCCGCATTGCA..........................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..................TTTCCGCATTGCAGGCGATCCGAAACC............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
........................CATTGCAGGCGATCCGAAACCG...........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................ATTACCCAATCGGATAAGGT....	20	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................ACCCAATCGGATAAGGTC...	18	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................AAGGCACTAAGGACATTACCCAATCGGA..........	28	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................AAGGACATTACCCAATCGGATAAGGTCA..	28	1	1.00	1	0	1	0	0	0
..............TATCTTTCCGCATTGCAGGC.......................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................AAGGCACTAAGGACATTACCCAATCGGAT.........	29	1	1.00	1	1	0	0	0	0

droVir3

TGATCCGTTCTCGTTGTCCTTCCGCATTGCGGGTGATCCGAAACCGAAGCGTAAGATA----TT-CCA--AA------------------------------------CTCC-------------------------TCGTTTG-C-TTATCAAT-----TTAATTA-TGTTG----------TTT-ATCCT--TGCAGTTGTGTTCATGAAGGGCACCAAGGATATAACCCAATCGGATCGCGTTAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................TTGTGTTCATGAAGGGCACC..............................	20	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTGTTCATGAAGGGCACC..............................	19	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGATAT......................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGATATA.....................	20	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCCGCATTGCGGGTGATCCGAAACCG...........................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGATATAACC..................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGCGGGTGATCCGAAACC............................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGATAT......................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAGGGCACCAAGGATATAACCC.................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CAATCGGATCGCGTTAGC	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGATATAACCC.................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGGATATAACCCAATCGGATCGCGTT...	27	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGATA.......................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCATTGCGGGTGATCCGAAACC............................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAAGGATAT......................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CCAATCGGATCGCGTTAGC	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGTGTTCATGAAGGGCACCA.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTGTTCATGAAGGGCACCAAG...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTGTCCTTCCGCATTGCGGGTGATCC..................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGGATATAACCCAATCGGATC........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGTTCATGAAGGGCACCAA............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAAGGATATA.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TGTTCATGAAGGGCACCAAG...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AAGGATATAACCCAATCGGATCG.......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TGAAGGGCACCAAGGATATAACCCA................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTTCTCGTTGTCCTTCCGCATTGCGGGT.......................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CATTGCGGGTGATCCGAAA..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCATTGCGGGTGATCCGAA...............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CCCAATCGGATCGCGTTAGC	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCCGCATTGCGGGTGATCCGAAA..............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGTGTTCATGAAGGGCACCC.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CCTTCCGCATTGCGGGTGATC...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGGGTGATCCGAAACCGAA.........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGGCACCAAGGATATA.....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GTTGTCCTTCCGCATTGCGGGTGATCC..................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGTGTTCATGAAGGGCACCAAG...........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGCGGGTGATCCGAAACCGAA.........................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................ATGAAGGGCACCAAGGATATA.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCGTTGTCCTTCCGCATTGCG..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................ACCCAATCGGATCGCGTTAGC	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..ATCCGTTCTCGTTGTCCTTCC..................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAAGGAT........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGCGGGTGATCCGAAAC.............................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTGTTCATGAAGGGCACCAAG...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATTGCGGGTGATCCGAAAC.............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCCGCATTGCGGGTGATCCGAA...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCACCAAGGATATAACCCAATCGGAT.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGATCCGTTCTCGTTGTCCT.....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TTCCGCATTGCGGGTGATCCG.................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATCCGTTCTCGTTGTCCTTCCG.................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCGCATTGCGGGTGATCCGAAACC............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................GGCACCAAGGATATAACCCAATCGGA..........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCGTTGTCCTTCCGCATTGCGGGTGA.....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTGTCCTTCCGCATTGCGGGTGA.....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AACCCAATCGGATCGCGTTAGC	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCGTTGTCCTTCCGCATTGCGGGT.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGCGGGTGATCCGAAACCG...........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATCCGTTCTCGTTGTCCT.....................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCATTGCGGGTGATCCGA................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCATGAAGGGCACCAAGGATATAACCCA................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTGTTCATGAAGGGCACCA.............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCGTTGTCCTTCCGCATTG............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGCGGGTGATCCGAAACCG...........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTTCTCGTTGTCCTTCCGCA...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTGTTCATGAAGGGCACCAAGGAT........................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAACCCAATCGGATCGCGTTAGC	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGATCCGTTCTCGATTTCCTTCCGTATTGCGGGTGATCCGAAACCGAAACGTAAGTTT----TC-CCA--AT------------ATGCATATCCTCTGCAGCTTCTCATTTCGT----TT-----------------------------------------------------------------GGTA-TT--CGCAGTGGTGTTCATGAAGGGCACCAAGGATATTACCCAATCGGATCGGGTCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................TTCATGAAGGGCACCAAGGATATTACCC.................	28	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................CAAGGATATTACCCAATCGGAT.........	22	1	1.00	1	1	0	0	0	0	0
...............TTCCTTCCGTATTGCGGGTGATCCGAA...............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................TACCCAATCGGATCGGGTCAGC	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................GTTCATGAAGGGCACCAAGG..........................	20	1	1.00	1	0	0	0	0	0	1

droGri2

C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-TT--TTTAGTGATGTTCATGAAGGGCACCAAGGATGTTACCCAATCGGATCGCGTTAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_23555

2r:12517960-12518022 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads