ID:

dsi_23509

 Coordinate:

2r:10854747-10854896 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.8 -34.6 -34.6

Flybase annnotation

five_prime_UTR [2r_10854729_10854746_-]; CDS [2r_10854660_10854728_-]; exon [2r_10854660_10854746_-]; intron [2r_10854747_10857893_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGCGGCCATGTTCGAACATGGACATTGGCGTGGGTGGGAAAAAATGCTTGGGATTCTGGCGAACCGCCTTGACGCGAAATCAACCTGCTATTCGGGGTCGGAATCCGTGATTACGTGTCTCGCAGACACCCACGAGTCGTTTGACTTACTCACACGTAGAATTTGAATAATTTATGAATGATACTGGTTTCCGTTTCAGCTAAAAAACTAATTGGAAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
**************************************************(((..((((.(((........((((((.(((((((((........))))(((...)))))))).)))))))))))))..)))..(((((....)))))..(((..((((((..........))))))..)))..((((........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................................................................................GGTCGGAATCCGGGAGGAC....................................................................................................................................... 19 3 12 6.67 80 49 25 6 0 0 0 0 0
............................................ATGCTTGGGATTGTG............................................................................................................................................................................................... 15 1 19 2.16 41 0 0 0 22 14 0 3 2
................................................................................................GGTCGGAATCCGTGAGGAC....................................................................................................................................... 19 2 1 2.00 2 0 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................AGTACTCGAGCAGTTCGGAAA....... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TACTCGAGCAGTTCGGAA........ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................CGTGGTCGGAATCCGGGA........................................................................................................................................... 18 2 2 1.00 2 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................CTAATTGGAAATGCAGTACTCGAGCA................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................TCACACGTAGAATTTGAATAATTTA........................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................CGTGGTCGGAATCCGTGA........................................................................................................................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TAATTGGAAATGCAGTACTCGAGC................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................CCAACGAGCCGTTTGACT....................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGTTTCCGTTTCAGAAAAAAGA.......................................... 22 3 4 0.25 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................AATGACACCGGTTTCCGT....................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0
................................................................................................GGTCGGAATCCGCGAGGAC....................................................................................................................................... 19 3 5 0.20 1 1 0 0 0 0 0 0 0
...........................................AATGCTTGGGATTGTG............................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................CTCGAGCAGGTAGGAAACT..... 19 3 18 0.17 3 2 1 0 0 0 0 0 0
...........................GGCGTGGGTGGGAGA................................................................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 1 0 0 0
............................................................................................ACGTGGTCGGAATCCGGGA........................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0
............................................................................................ACGTGGTCGGAATCCGGG............................................................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

TACGCCGGTACAAGCTTGTACCTGTAACCGCACCCACCCTTTTTTACGAACCCTAAGACCGCTTGGCGGAACTGCGCTTTAGTTGGACGATAAGCCCCAGCCTTAGGCACTAATGCACAGAGCGTCTGTGGGTGCTCAGCAAACTGAATGAGTGTGCATCTTAAACTTATTAAATACTTACTATGACCAAAGGCAAAGTCGATTTTTTGATTAACCTTTACGTCATGAGCTCGTCAAGCCTTTTAATGAG
**************************************************(((..((((.(((........((((((.(((((((((........))))(((...)))))))).)))))))))))))..)))..(((((....)))))..(((..((((((..........))))))..)))..((((........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................................................................................................TCGATTTTTTGATTA..................................... 15 0 4 208.75 835 835 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCGATTTTTTGATTA..................................... 16 0 1 27.00 27 27 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCGATTTTTTGATT...................................... 15 0 1 13.00 13 13 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCGATTTTTTGATTAG.................................... 17 1 6 7.83 47 47 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACCTTTAGGTCATGTGC.................... 19 3 18 6.39 115 0 65 44 0 0 0 4 0 0 2
.................................................................................................................................................................................................CCAAGTCGATTTTTTGATTA..................................... 20 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACCTTTAGGTCATGTGCT................... 20 3 6 4.67 28 0 17 7 0 1 0 1 2 0 0
....................................................................................................................................................................................................AATCGATTTTTTGATTA..................................... 17 1 5 2.40 12 11 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CCAAGTCGATTTTTTGATT...................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACCTTTAGGTCATGTGC.................... 18 2 2 1.50 3 0 2 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAATCGATTTTTTGATTA..................................... 18 1 2 1.50 3 1 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCTTTAGGTCATGTGCT................... 18 2 4 1.25 5 0 2 3 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGATTTTTTGATT...................................... 16 1 16 1.13 18 18 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGTCGATTTTTTGATTAG.................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTCGATTTTTTGATTAG.................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACCTTTACGTCATGTGCTTTT................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTCGATTTTTTGATTA..................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TAAGTCGATTTTTTGATT...................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAAAGTCGATTTTTTGAT....................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACCTTTAGGTCATGTGCTT.................. 20 3 4 1.00 4 0 2 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ATCGATTTTTTGATTAA.................................... 17 1 6 0.83 5 5 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCGATTTTTTGATTA..................................... 17 1 4 0.75 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCGATTTTTTGATTA..................................... 17 1 8 0.75 6 6 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCCCCGTCGATTTTTTGATTA..................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAATCGATTTTTTGATTA..................................... 19 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTAA.................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTAAGGTCTA.............................. 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCTTTACGTCATGTGCTT.................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCTTTAGGTCATGTGCTT.................. 19 3 20 0.35 7 0 2 3 0 0 2 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTAGC................................... 17 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCGATTTTTTGATTA..................................... 18 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTCGATTTTTTGA........................................ 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTATGACCAAAGTCAAAGTTGAT............................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CCAAGATCGATTTTTTGATTA..................................... 21 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAATCGATTTTTTGATTAG.................................... 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................AATCGATTTTTTGAT....................................... 15 1 20 0.25 5 5 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CAGTCGATTTTTTGATTAG.................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCGATTTTTTGATCA..................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATCA..................................... 15 1 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACCTTTACGTCATGTG..................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CCTTTAGGTCATGTGCT................... 17 2 13 0.15 2 0 0 0 0 1 0 0 0 1 0
......................................................................................................................................................................................................TCGATTTTTTGATGA..................................... 15 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GCGATTTTTTGATTA..................................... 15 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCGATTTTTTGATT...................................... 17 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CGTCGATTTTTTGATTA..................................... 17 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAATCGATTTTTTGAT....................................... 16 1 16 0.13 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTACCGT................................. 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................CCCAAGTCGATTTTTTGA........................................ 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGTCGATTTTTTGATT...................................... 16 1 16 0.13 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................ACCTTTAGGTCATGTGC.................... 17 2 16 0.13 2 0 0 0 0 1 1 0 0 0 0
..................................................................................................................................................................................................CCAGTCGATTTTTTGAT....................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCGATTTTTTGATT...................................... 16 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCGATTTTTTGAT....................................... 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGATCGATTTTTTGATTA..................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCCGATTTTTTGATTA..................................... 16 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAAATCGATTTTTTGATTA..................................... 19 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCGATTTTTTGATTAGCCG................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCCTGTCGATTTTTTGATTA..................................... 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTGA.................................... 16 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACTGAATGAGAGTGTAT........................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................ACCAAGTCGATTTTTTG......................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTGAGCAT................................ 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ACAATCGATTTTTTGATT...................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTCTGATTA..................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGATTTTTTGATTG..................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACTTCGATTTTTTGATTA..................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GGAGTCGATTTTTTGAT....................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CAACCTTTATGTCATGTGC.................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CTGAATCGATTTTTTGATTA..................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCGATTTTTTGATTAAA................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCAAGATCGATTTTTTGAT....................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAGATTTTTTGATTA..................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10854697-10854946 - dsi_23509 ATGCGG----------CCATGTTCGA----ACATGG---A------CATT-----GG--CGTGGGTG------GG-A---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droSec2 scaffold_1:7659280-7659529 - ATGCGG----------CCATGTTCGA----ACATGG---A------CATT-----GG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TGGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTGGT---TTCCG-----------------TTTCAGCTAA---C-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
dm3 chr2R:10151671-10151916 - ATGCGG----------CCATGTTCGA----AAATCG---A------CATT-----GG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGT----CAG--ACACCCACGAGTC------GT-TTGATTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droEre2 scaffold_4845:15691527-15691774 + ATGCGG----------CCATTTTCGA----ACATGG---A------TATT-----TG--CGTGGGTG--------CG---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTAACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droYak3 2R:10088612-10088861 - ATGCGG----------CCATTT-CGA----AAATGG---A-AA---CA-T-----CGAACGTGGGTG--------GT---------------------------------GAAAATGCTTGGGA------TTCTTGCAAACCGCCTTGACGCCA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGAAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droEug1 scf7180000409462:2691383-2691641 + ATGCGG----------CCATTTTCGA----ACATAT---A----T-TATT-----TG--CGTGGGTG--------GGAA------ATGG--------------------GAAAAATGGTTTGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAAGCCGTGATTACG---------TGTCTCGCAG--ACACCCACGATTC------GT-TTTACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGACAT---A--------CTGGT---TTCCG-----------------TTTCAGCAAA---C-----------TAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droBia1 scf7180000301506:3112030-3112276 + ATGCGG----------CCATTTTCGA----ACATGA---A------CGCT-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCTAGCCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAATCCGTGATTACG---------TGTCTCACAG--ACACCCACGAGTC------GC-TTCACTCGCTCAC---ACGTC------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---T--------CTGGT---TTCCG-----------------TTTCAGCAAA----------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droTak1 scf7180000414717:24925-25154 + ATGCGG----------CCATTTTCGA----ACATTT---G----TTCATT-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-T-----------------------------------------------------------------------------------------TTTGA--ATAATTTATGAATAA--T---A--------CCCGT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droEle1 scf7180000491349:719809-720058 + ATGCGG----------CCATTTTCGTAT------GG-------------T-----CG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGATTCGGATTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGACTC------GT-TTCACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTGGT---TTCCG-----------------TTTCAGAAAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droRho1 scf7180000777200:468958-469199 - ATGCGG----------CCATTTTCGTAT------GG-------------T-----AG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGACTC------GT-TTCACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droFic1 scf7180000453215:702926-703168 - ATGCGG----------CCATTTTCGAAT------GG-------------T-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAATCGCCTTGGAGCGG------------AATCAA------------CCTG----CCATT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GTCTTAACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCGAAA---------------AACTAATTGG---ATATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droKik1 scf7180000302411:346285-346566 + ATGCGG----------CCATTTTTATAT------GG------------TTGGTGGTG--CGTGGGTG--------GGAA-------------------------------AAAAATACTTGGGA------TTCTGTCGAACCGCCTTGAAACTAAAACAGATATCGAATCCACCTGCCTGACTGCCTG----CCATG-CGGGG---T---CACAATCCGTGATTACG---------TGTTTCGCAG--ACACCCACGACTC------GC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---ATGTTCATTCTCAT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droAna3 scaffold_13266:14501479-14501728 - ATGCGG----------CCATTTTTGTTT------GA------------AT-----TG--TGTGGGTG--------GG---------------------------------AAAAATGCCTTGAA------TTCTTGTGAACCGCCTTGAATAAA--AAAAAAT---GTTCAA------------CCTG----CCATT-CGGGG---A---CGCAATCCATGATTACG---------TGTTTCGCAG--ACACCCACGTCTC------CC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTCAT---TTCCG-----------------TTACAGCAAAA---------------TACTAATTGG---ACATGCAGTACTCGAGCAGTTCGGAAAATTACTC
droBip1 scf7180000396428:324498-324753 + ATGCGG----------CCATTTTTGTTT------GA------------AT-----TG--TGTGGGTG--------GG---------------------------------AAAAATGCCTTGAA------TTCTTGTGAACCGCCTTGAATAAA--AAAAATA---ATTCAA------------CCTG----CCATT-CGGGGCATTCGACACAATCCATGATTACG---------TGTTTCGCAG--ACACCCACGTCTC------TC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTCGT---TTCCG-----------------TTACAGCAAAA---------------TACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTC
dp5 3:17402128-17402422 - GTGCCG----------CCATTTCGGTGCGGGCATG---------C-T-------------ATGGGTGTAGGCGGA-G---------GCGGTTGCCCGAGTAAACAGATTCAGAAATGTTTGAAA------TTCACGAGAACTGCCTTG------------------AATCAA------------CCTGCCTGCCATG-CGGGA--AC---CGAGATCCGTGCTTACGTGTACTACGTGTCTGTCAG--ACACCCACGGCGCCTCTTTCT-CTCGGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGG-ATTGAA--------TTGGC---TTTCG-----------------TTTCAGCAAA---A-----------ACACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTATTC
droPer2 scaffold_31:389842-390144 + GTGCCG----------CCATTTCGGTGCGGGCATA---------C-T-------------ATGGGTGTAGGCG--GGTAGGCGTAGGCGGTTGCCCGAGTAAACAGATTCAGAAATGTTTGAAA------TTCACGAGAACTGCCTTG------------------AATCAA------------CCTGCCTGCCATG-CGGGA--AC---CGAGATCCGTGCTTACGTGTACTACGTGTCTGTCAG--ACACCCACGGCGCCTCTTTCT-CTCGGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGG-ATTGAA--------TTGGC---TTTCG-----------------TTTCAGCAAA---A-----------ACACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTATTC
droWil2 scf2_1100000004510:691397-691621 + T-------------------------------------------------------G--AATGAATG--------------------------------------------AGAATGTTTGAAA------TTCTTATGAACCTTGTTGT---------------------------------------------------------------TGATCCATGGTTACG---------TGT-TAACA---ACACCCACGATCTTTTATTTT-TTAAGTTACTCACAACACGTA------------------------------------------------------------------A---TTGA--TGAATATATTAACAA------A--------TTGAT---TTATATGTATATATATGACGACTTTCAGCAGAAATATCTACATACATATAGAAATCGG---AAATGCAGTACTCGAGCAGTTCAGAAAATTACTC
droVir3 scaffold_12875:19109140-19109432 - TTCTGGAAACGACGCACCATTTCTGT----ACATA-TTGAAAAGA-TA-C-----GT--CGTGGGTG--------TT-------------------GT--------ATATAGAAATGTTTGAAA------TTCTTATGAACTGC--------G-------------AATCAA------------CCTG----TCAGCCCG-------------AAGCCGT--TTACG---------TTT---ACAGTAACACCTACG-CTA------GC-TTGAAT-----------------TTATGTACA---GACC----ATGACTAAAATAGTACTTACTCATGCA----------TAATGTAAATTTTAA--ATATTTTCTGAATAT--T---T--------TCGGTTGATGTCA---------------TATTCCAGCAGAA--A-----------ACAATAATTGG---AAATGCAGTACTCGAGCAGCTCGGAAAATTACTC
droMoj3 scaffold_6496:12795773-12796066 - CTGGCA----------CCATGTTTGT----ACAGA-TTGAA-A---TA-T-----CC--AGTGGGTG--------TAAT-----------------GT--------ATACAAGAATGCTTGAAA------TTCTCATGAACTGC--------G-------------AATCAA------------CCTG----TCAGT-CCG------------AAGCCGT--TTACG---------TTT---ACAGTTACACCCACACG-C------GC----------ACACAGCCTAGAATTTA------------------TGACTAAAATATCACTTACTCATACACATATAAATATAATAT-AAATTTAA--ATATTTCGTCTATGT-TTT---TATTGATGCTTGA---TGTCA-----------------TTCCTGCAGAAAAA-----------ACAATAATTGG---AAATGCAGTACTCGAGCAGCTCGGAAAATTACTC
droGri2 scaffold_15245:13139754-13140059 - ACGAGG--------CACCATTTTTGA----ACATA-TTGAACA---CA-T-----TT--CGTGGGTG--------TTGA------GTTGTATATTTGTATATACA--A--TCAAATGTTTGGAA------TTCTTATGAACTGC--------G-------------AATCAA------------CCTG----TCAGTACG-------------AAGCCGT--TTACGT--------TGACTTTT----ACACCCACATCC-------AA-AAGAAT-----------------TTATTTACATATGAACATATATGACTAA-GGAGAACTTACTCATACA----------TAA----GCATTTAACGAT-ATTTCTGAATGA--T---C--------TCGCTTGATGTCA---------------TTTTGCAGCAGAA--A-----------ACAATAATTGAACAAAATGCAGTACTCGAGCAGCTCGGAAAATTACTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGCGG----------CCATGTTCGA----ACATGG---A------CATT-----GG--CGTGGGTG------GG-A---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCGAGCAGTTCGGAAA.......2111.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGAGCAGTTCGGAA........1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGG---AAATGCAGTACTCGAGCA................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................TCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTA.............................................................................................................................2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG---AAATGCAGTACTCGAGC.................2411.00110000000000000000
droSec2
ATGCGG----------CCATGTTCGA----ACATGG---A------CATT-----GG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TGGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTGGT---TTCCG-----------------TTTCAGCTAA---C-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG---AAATGCAGTACTCGAGCA................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTACTCGAGCAGTT.............1911.0010010
dm3
ATGCGG----------CCATGTTCGA----AAATCG---A------CATT-----GG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGAATCCGTGATTACG---------TGT----CAG--ACACCCACGAGTC------GT-TTGATTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................TG------GG-G---------------------------------AAAAATGCTTGGGA------TTCTGGC...........................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG---AAATGCAGTACTCGAGCAGT..............2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---A-----------AAACTAATTGG---AAATGCAGT.........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG---AAATGCAGTACTCGAGCAGT..............2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACTCGAGCAGTTCGGAAAAT.....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTC.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCAGTACTCGAGCAGTTCGGAATC......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATTGG---AAATGCAGTACT......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.TGCGG----------CCATGTTCGA----AAATCG---A------CATT-----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACTCGAGCAGTTCGGA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AAATGCAGTACTCGAGCAGTTCGGA.........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGTTCGGAAAATTACTC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGG---AAATGCAGTACTCGAGCAGT..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGTA------------------------------------------------------------------GAATTTGA--ATAATTT..............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGAGCA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AAATGCAGTACTCGAGCA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATTGG---AAATGCAGTAC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................G---A------CATT-----GG--CGTGGGTG------GG-G---------------------------------AT....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAAT........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGAGC.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GA------------AATCAA------------CCTG----CTATT-CGGGG---T---CGGA..............................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCG....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTACTCGAGCAGTTCGGA.........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTCGGAAAATTACTC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTACTCGAGCAGTTCGGAA........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AAATGCAGTACTCGAGCAGT..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGG---AAATGCAGTACTCGAGCA................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGG---AAATGCAGTACTCGAGC.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................ATT-----GG--CGTGGGTG------GG-G---------------------------------AAAAAA................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGTACTCGAGCAGTTCGGAAAAT.....2811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG---AAATGCAGTACTCGAGCA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droEre2
ATGCGG----------CCATTTTCGA----ACATGG---A------TATT-----TG--CGTGGGTG--------CG---------------------------------AAAAATGCTTGGGA------TTCTGGCGAACCGCCTTGACGCGA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGGAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTAACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGG---AAATGCAGTACTCGAGCA................2612.0020000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTACTCGAGCAGTTCGGA.........2111.0010000010
...........................................................................................................................................................................A------------CCTG----CTGTT-CGGGG---T---CGGA..............................................................................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATTGG---AAATGCAGTACTCGAGCA................2711.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGTACTCGAGCAGTTCGGA.........2411.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACTCGAGCAGTTCGGAAA.......2411.0010000010
..............................................................................................................................................................................................................................................TCTCGCAG--ACACCCACGAGTC------GT-TTG...................................................................................................................................................................................................................................2611.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGA...................2111.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACTCGAGCAGTT.............1811.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAATTGG---AAATGCAGTAC.......................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AAATGCAGTACTCGAGCAGT..............2111.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCGAGCAGTTCGGAA........2011.0010000100
droYak3
ATGCGG----------CCATTT-CGA----AAATGG---A-AA---CA-T-----CGAACGTGGGTG--------GT---------------------------------GAAAATGCTTGGGA------TTCTTGCAAACCGCCTTGACGCCA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGAAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-TTGACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCTAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................GCCA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CG................................................................................................................................................................................................................................................................................................2711.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTGG---AAATGCAGTACTCGAGCA................2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGG---AAATGCAGTACTCGAGCA................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTACTCGAGCAGTTCGGAAA.......2411.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAATTGG---AAATGCAGTACTCGAGCA................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGA...................2111.00100000010000
droEug1
ATGCGG----------CCATTTTCGA----ACATAT---A----T-TATT-----TG--CGTGGGTG--------GGAA------ATGG--------------------GAAAAATGGTTTGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAAGCCGTGATTACG---------TGTCTCGCAG--ACACCCACGATTC------GT-TTTACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGACAT---A--------CTGGT---TTCCG-----------------TTTCAGCAAA---C-----------TAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droBia1
ATGCGG----------CCATTTTCGA----ACATGA---A------CGCT-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCTAGCCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAATCCGTGATTACG---------TGTCTCACAG--ACACCCACGAGTC------GC-TTCACTCGCTCAC---ACGTC------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---T--------CTGGT---TTCCG-----------------TTTCAGCAAA----------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droTak1
ATGCGG----------CCATTTTCGA----ACATTT---G----TTCATT-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CACAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GT-T-----------------------------------------------------------------------------------------TTTGA--ATAATTTATGAATAA--T---A--------CCCGT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droEle1
ATGCGG----------CCATTTTCGTAT------GG-------------T-----CG--CGTGGGTG------GG-G---------------------------------AAAAATGCTTGGGATTCGGATTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CTGTT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGACTC------GT-TTCACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTGGT---TTCCG-----------------TTTCAGAAAA---A-----------AAACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droRho1
ATGCGG----------CCATTTTCGTAT------GG-------------T-----AG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAACCGCCTTGGAGCGA------------AATCAA------------CCTG----CCATT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGACTC------GT-TTCACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droFic1
ATGCGG----------CCATTTTCGAAT------GG-------------T-----CG--CGTGGGTG--------GG---------------------------------AAAAATGCTTGGGA------TTCTTGCGAATCGCCTTGGAGCGG------------AATCAA------------CCTG----CCATT-CGGGG---T---CGCAATCCGTGATTACG---------TGTCTCGCAG--ACACCCACGAGTC------GTCTTAACTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTGGT---TTCCG-----------------TTTCAGCGAAA---------------AACTAATTGG---ATATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droKik1
ATGCGG----------CCATTTTTATAT------GG------------TTGGTGGTG--CGTGGGTG--------GGAA-------------------------------AAAAATACTTGGGA------TTCTGTCGAACCGCCTTGAAACTAAAACAGATATCGAATCCACCTGCCTGACTGCCTG----CCATG-CGGGG---T---CACAATCCGTGATTACG---------TGTTTCGCAG--ACACCCACGACTC------GC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---ATGTTCATTCTCAT---TTCCG-----------------TTTCAGCAAAA---------------AACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
droAna3
ATGCGG----------CCATTTTTGTTT------GA------------AT-----TG--TGTGGGTG--------GG---------------------------------AAAAATGCCTTGAA------TTCTTGTGAACCGCCTTGAATAAA--AAAAAAT---GTTCAA------------CCTG----CCATT-CGGGG---A---CGCAATCCATGATTACG---------TGTTTCGCAG--ACACCCACGTCTC------CC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------TTCAT---TTCCG-----------------TTACAGCAAAA---------------TACTAATTGG---ACATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACATGCAGTACTCGAGC.................1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTACTCGAGCAGTTCGGAAAA......2611.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------TACTAATTGG---ACATGCAGTACT......................2311.001010000
droBip1
ATGCGG----------CCATTTTTGTTT------GA------------AT-----TG--TGTGGGTG--------GG---------------------------------AAAAATGCCTTGAA------TTCTTGTGAACCGCCTTGAATAAA--AAAAATA---ATTCAA------------CCTG----CCATT-CGGGGCATTCGACACAATCCATGATTACG---------TGTTTCGCAG--ACACCCACGTCTC------TC-TTGAGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGA--T---A--------CTCGT---TTCCG-----------------TTACAGCAAAA---------------TACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTACTCSizeHit CountTotal NormTotal
No Reads
dp5
GTGCCG----------CCATTTCGGTGCGGGCATG---------C-T-------------ATGGGTGTAGGCGGA-G---------GCGGTTGCCCGAGTAAACAGATTCAGAAATGTTTGAAA------TTCACGAGAACTGCCTTG------------------AATCAA------------CCTGCCTGCCATG-CGGGA--AC---CGAGATCCGTGCTTACGTGTACTACGTGTCTGTCAG--ACACCCACGGCGCCTCTTTCT-CTCGGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGG-ATTGAA--------TTGGC---TTTCG-----------------TTTCAGCAAA---A-----------ACACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTATTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................GGCATG---------C-T-------------ATGGGTGTAGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................CGTGCTTACGTGTACTACGTG......................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACACTAATTGG---AAATGCAGT.........................2111.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAGCAGTTCGGAAA.......1811.0010100000000
............................................C-T-------------ATGGGTGTAGGCGGA-G---------TA............................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
droPer2
GTGCCG----------CCATTTCGGTGCGGGCATA---------C-T-------------ATGGGTGTAGGCG--GGTAGGCGTAGGCGGTTGCCCGAGTAAACAGATTCAGAAATGTTTGAAA------TTCACGAGAACTGCCTTG------------------AATCAA------------CCTGCCTGCCATG-CGGGA--AC---CGAGATCCGTGCTTACGTGTACTACGTGTCTGTCAG--ACACCCACGGCGCCTCTTTCT-CTCGGTTACTCAC---ACGTA------------------------------------------------------------------GAATTTGA--ATAATTTATGAATGG-ATTGAA--------TTGGC---TTTCG-----------------TTTCAGCAAA---A-----------ACACTAATTGG---AAATGCAGTACTCGAGCAGTTCGGAAAATTATTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................GGCG--GGTAGGCGTAGGCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGTACTCGAGCAGTTCGGAAAA......2711.001000001
....CG----------CCATTTCGGTGCGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
T-------------------------------------------------------G--AATGAATG--------------------------------------------AGAATGTTTGAAA------TTCTTATGAACCTTGTTGT---------------------------------------------------------------TGATCCATGGTTACG---------TGT-TAACA---ACACCCACGATCTTTTATTTT-TTAAGTTACTCACAACACGTA------------------------------------------------------------------A---TTGA--TGAATATATTAACAA------A--------TTGAT---TTATATGTATATATATGACGACTTTCAGCAGAAATATCTACATACATATAGAAATCGG---AAATGCAGTACTCGAGCAGTTCAGAAAATTACTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAATATCTACATACATATAGA...........................................2412.00202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATATAGAAATCGG---AAATGC............................2111.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGG---AAATGCAGTACTC.....................2011.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATCGG---AAATGCAGTACT......................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGAAATCGG---AAATGCAGTACTC.....................2611.00110000
droVir3
TTCTGGAAACGACGCACCATTTCTGT----ACATA-TTGAAAAGA-TA-C-----GT--CGTGGGTG--------TT-------------------GT--------ATATAGAAATGTTTGAAA------TTCTTATGAACTGC--------G-------------AATCAA------------CCTG----TCAGCCCG-------------AAGCCGT--TTACG---------TTT---ACAGTAACACCTACG-CTA------GC-TTGAAT-----------------TTATGTACA---GACC----ATGACTAAAATAGTACTTACTCATGCA----------TAATGTAAATTTTAA--ATATTTTCTGAATAT--T---T--------TCGGTTGATGTCA---------------TATTCCAGCAGAA--A-----------ACAATAATTGG---AAATGCAGTACTCGAGCAGCTCGGAAAATTACTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGG---AAATGCAGTACTCGAGCAGCTC............3011.001000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTACTCGAGCAGCTCGGAAAA......2611.001000000000000000000000000000000000000000000000000000000000000100
......................................................................................................................................................................AATCAA------------CCTG----TCAGCCCG-------------A..............................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGTACTCGAGCAGCTC............2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA--A-----------ACAATAATTGG---AAATGCAGTACT......................2811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA--A-----------ACAATAATTGG---AAATGCAGTACTCGAGC.................3211.001000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCGAGCAGCTCGGAA........2011.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---AAATGCAGTACTCGAGCAG...............2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AATCAA------------CCTG----TCAGCCCG-------------AAGC...........................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACAATAATTGG---AAATGCAGT.........................2111.001000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG---AAATGCAGTACTCG....................1811.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AAATGCAGTACTCGAGCA................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGAGC.................2311.001000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................AACTGC--------G-------------AATCAA------------CCTG----TCAGCC..............................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGTACTCGAGCAGCTCGGG.........2411.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCTCGGAAAATTACT.2011.001000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................AA------------CCTG----TCAGCCCG-------------AAGCCGT--......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CTGGCA----------CCATGTTTGT----ACAGA-TTGAA-A---TA-T-----CC--AGTGGGTG--------TAAT-----------------GT--------ATACAAGAATGCTTGAAA------TTCTCATGAACTGC--------G-------------AATCAA------------CCTG----TCAGT-CCG------------AAGCCGT--TTACG---------TTT---ACAGTTACACCCACACG-C------GC----------ACACAGCCTAGAATTTA------------------TGACTAAAATATCACTTACTCATACACATATAAATATAATAT-AAATTTAA--ATATTTCGTCTATGT-TTT---TATTGATGCTTGA---TGTCA-----------------TTCCTGCAGAAAAA-----------ACAATAATTGG---AAATGCAGTACTCGAGCAGCTCGGAAAATTACTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG---AAATGCAGTACTCGAGCAGCT.............2411.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGG---AAATGCAGTACTCGAGC.................2111.001000001
........................................................................................................................................................................................CCTG----TCAGT-CCG------------AAGCCGT--TTACG---------........................................................................................................................................................................................................................................................................2411.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGG---AAATGCAGTACTCG....................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGTACTCGAGCAGCT.............2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGG---AAATGCAGTACTCGAGCAGCT.............2711.001000001
droGri2
ACGAGG--------CACCATTTTTGA----ACATA-TTGAACA---CA-T-----TT--CGTGGGTG--------TTGA------GTTGTATATTTGTATATACA--A--TCAAATGTTTGGAA------TTCTTATGAACTGC--------G-------------AATCAA------------CCTG----TCAGTACG-------------AAGCCGT--TTACGT--------TGACTTTT----ACACCCACATCC-------AA-AAGAAT-----------------TTATTTACATATGAACATATATGACTAA-GGAGAACTTACTCATACA----------TAA----GCATTTAACGAT-ATTTCTGAATGA--T---C--------TCGCTTGATGTCA---------------TTTTGCAGCAGAA--A-----------ACAATAATTGAACAAAATGCAGTACTCGAGCAGCTCGGAAAATTACTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:09 AM