dsi_23494

########################################################################################################################################################################################################################################################## GCTGGCGCTGCCCGCCTTGTCGCGCATGTCCGAACTGGATGCCTTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCCGTGGCTGCAGCTGCCGTCACGGGCGGCAATTTACAGCGCATGCAGCAGATCACCAAGTCAGCGTCCTCCAACATTATGTCCCAGCGGATGCACTACTATACTACGTACAAC *****************************************************************************************************************************.....(((.((.(((((((....(((((((...))))))).....)))).))))).)))**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	O002 Head	SRR553485 Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................TCCAACATTATGTCCCAGCGGA.......................	22	0	1	2.00	2	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCAGCGCCCTGCACCATTATGT................................	22	3	2	1.50	3	3	0	0	0	0	0	0	0	0
...............................................................................................................................GACGATGCGGCCGTGGC..........................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................GCATGTCCGAACTGGATG.................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0
...................................................................................................................................................................GGCAATTTACAGCGCATGCAGCA................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0
....................................................GTCTTGTCGGAGACCG......................................................................................................................................................................................	16	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................TGCAGCTGCCGTCACGGGC.......................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TCCTCCAACATTATGTCCCAGCGGA.......................	25	0	1	1.00	1	0	0	0	0	0	1	0	0	0
...........................................TTGAATACCCTCTTGTCGGAGACC.......................................................................................................................................................................................	24	1	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................CGGATGCACTACTATACT.........	18	0	1	1.00	1	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................CGTCCTCCAACATTATGTCCCAGCGGA.......................	27	0	1	1.00	1	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................GGCAATTTACAGCGCATG.....................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................ATTATGTCCCAGCGGATG.....................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..........................................................................................................AAGCAGCGTGCTGTTACCATGGAC........................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................AAGTCAGCGCCCTGCACCATTATG.................................	24	3	1	1.00	1	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CACCAAGTAAGCGTCCTCCAAC.......................................	22	1	1	1.00	1	0	0	1	0	0	0	0	0	0
....................................................................................................CCAAAGAAGCAGCGTGCTGTT.................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGTCCCAGCGGATGCACTACTATACT.........	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.............................................GAATACCGTCTTGTCGGAGACCGCTGAGT................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.............................CCGAACTGGATGCCTTGAATACC......................................................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................................................................................TGCTGTTACCATGGACGATGCGGC................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................AGCTGCCGTCACGTGAGG.....................................................................................	18	2	2	0.50	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TCAGCGCCCTGCACCATTATG.................................	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CCCGGCCGATGCACTA................	16	2	20	0.20	4	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TCAGCGCCCTGCACCATTAT..................................	20	3	6	0.17	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................ACATGAAGCAGATCGCCAAGT.....................................................	21	3	7	0.14	1	0	0	0	0	0	1	0	0	0
.....................................GATGCCTTGAAGAACGTC...................................................................................................................................................................................................	18	2	8	0.13	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCCGGCCGATGCACTA................	17	2	11	0.09	1	1	0	0	0	0	0	0	0	0
.................................ACTGGATGTCTTGAGT.........................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0

CGACCGCGACGGGCGGAACAGCGCGTACAGGCTTGACCTACGGAACTTATGGCAGAACAGCCTCTGGCGACTCAAGGTACACCAATGGTTCTTCTTCTTTGGTTTCTTCGTCGCACGACAATGGTACCTGCTACGCCGGCACCGACGTCGACGGCAGTGCCCGCCGTTAAATGTCGCGTACGTCGTCTAGTGGTTCAGTCGCAGGAGGTTGTAATACAGGGTCGCCTACGTGATGATATGATGCATGTTG **************************************************************.....(((.((.(((((((....(((((((...))))))).....)))).))))).)))*****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O001 Testis	SRR553488 RT_0-2 hours eggs	M024 male body
..................................................................................................................................................................................................TCAGTCGCGGGACGTGGTAATACA................................	24	3	1	2.00	2	2	0	0	0
.............................................CTTATGGCAGAACAGCCT...........................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................TTCAGTCGCGGGACGTGGTAATAC.................................	24	3	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................TCAGTCGCGGGACGTGGTAATA..................................	22	3	2	0.50	1	1	0	0	0
....................................................................................................................................................................................................AGTCGCGGGACGTGGTAATACA................................	22	3	2	0.50	1	1	0	0	0
.................................................................................................................................................................................................TTCAGTCGCGGGACGTGGTA.....................................	20	3	8	0.25	2	2	0	0	0
......................................................................................................................................................................................................TCGCGGGACGTGGTAATACA................................	20	3	5	0.20	1	1	0	0	0
....................................................................................................................................................................................................AGTCGCGGGACGTGGTAATA..................................	20	3	6	0.17	1	1	0	0	0
..........................ACAGGCGTGACCTACG................................................................................................................................................................................................................	16	1	8	0.13	1	1	0	0	0
........................................................................................................................................................................................GTCTAGGGGATCAGTAGCA...............................................	19	3	10	0.10	1	0	0	1	0
..................................................................................................................ACGACAATGGTACCTTG.......................................................................................................................	17	2	11	0.09	1	0	0	1	0
.........................................................................................................................................................................................................................AGGCTGACCTACGTGATGA..............	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:3703672-3703921 +	dsi_23494	GCTGG---------CGCTGCCCGCCTTGTCGCGCATGTCCGAACTGGATGCCTTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCCGT------GGCTGCAGCTGCCGTCACGGGCGGCAATTTACAGCGCATGCAGCAGATCACCAAGTCAGCGTCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACTACGT-------------AC---AAC
droSec2	scaffold_4:2704828-2705077 -		GCTGG---------CGCTGCCCGCCTTGTCGCGCATGTCCGAACTGGATGCCTTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCCGT------GGCTGCAGCTGCCGTCACGGGCGGCAATTTACAGCGCATGCAGCAGATCACCAAGTCAGCGTCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACTACGT-------------AC---AAC
dm3	chrX:4017032-4017281 +		GCTGG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGATGCCCTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCGGT------GGCTGCAGCTGCCGTCACGGGCGGCAACTTACAGCGCATGCAGCAGATCACCAAGTCCGCGTCCTCCAACATCATGTCCCAGCGGATGCA----CT-----ACTATACTCCGT-------------AC---AAC
droEre2	scaffold_4690:1393944-1394193 +		GCTCG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGAAGCCCTGAATACCGTCCTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGACGATGCAGCGGT------GGCTGCGGCTGCCGGCACGGGCGGCAACTTGCAGCGCATGCAGCAGATCACCAAGTCCGCATCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACCCCCT-------------AC---AAC
droYak3	X:4411914-4412163 -		ACTGG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGATGCCCTGAATACCGTCCTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGATGATGCGGCGGT------GGCTGCGGCTGCAGGCACGGGGGGCAACTTGCAGCGCATGCAGCAGATCACCAAGTCCGCGTCCTCTAACATAATGTCCCAACGGATGCA----CT-----ACTATACCCCGT-------------AC---AAC
droEug1	scf7180000409553:268283-268532 +		TCTGG---------CGCTGCCTGCCTTAGCCCGCATGTCCGAGGTGGATGCCCTCAACACCGTTCTAACGGAGACCGCCGAATTTCATGTTGTAACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACAATGGACGATGCGGCTGT------GGCTGCAGCTGCCACAACCGGCGGCAATTTGCAACGCATGCAGCAGATCACCAAGTCAGCTTCCTCTAACATGATGTCCCAGCGGATGCA----TT-----ACTATGCCCCGT-------------AC---AAT
droBia1	scf7180000301623:199732-199981 -		GCTGG---------CGCTGCCCGCCCTGGCGCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGCGCCGTCACCATGGACGATGCAGCGGT------GGCGGCTGCCGCCAGTACGGGCGGCAACCTGCAACGCATGCAGCAGATCACCAAGTCGGCCTCCTCCAACATGATGTCCCAGCGGATGCA----CT-----ACTACACGCCGT-------------AC---ACC
droTak1	scf7180000415864:215589-215840 -		ACTT----------CGCTGCCCGCCTTAACGCGCATGTCCGAGCTAGATGCCCTGAACACTGTGCTCTCCGAAACGGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAACGCGCCGTCACCATGGACGATGCGGCGGTGGCGGTGGCGGCGGCGGCCACCACGGGTGGCAATTTGCAGCGCATGCAGCAGATCACCAAGTCGGCCTCCTCGAACATGATGTCCCAGCGGATGCA----CT-----ACTACACCA----------------GT---AGC
droEle1	scf7180000491006:2888949-2889195 +		ACTGG---------C---GGCCGCCCTGGCCCGCATGTCCGAGCTGGATGCCCTGAACACTGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------GGCGGCTGCTGCCAGCGCTGGCGGCAATCTGCAACGCATGCAGCAGATCACCAAGTCGGCCTCCTCCAATATGATGTCCCAGCGGACGCA----CT-----ACTACACTCCCT-------------AC---GGC
droRho1	scf7180000779334:684239-684500 -		GCTGC---------CGTTGCCAGCTTTGGCGCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGCGCCGTAACTATGGACGATGCGGCGGT------GGCGGCGGCTGCCAGCACGGGCGGCAATCTGCAACGCATGCAGCAGATCACGAAGTCGGCCTCCTCCAACATGATGTCCCAGCGGATGCA----TT-----ACTACACTCCTTATG---GGAGCAA-CAGCAAC
droFic1	scf7180000453901:445921-446170 -		GCTGG---------CGTTGCCGGCGCTGGCTCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCACGTTGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCCGTCACCATGGATGATGCAGCGGT------GGCGGCGGCCGCCAGCACAGGCGGCAATCTCCAGCGCATGCAACAGATCACCAAGTCGGCCTCCTCCAGCATGATGTCGCAGCGGATGCA----CT-----ACTACACCCCGT-------------AC---AAC
droKik1	scf7180000302798:110623-110872 +		ACTGA---------CCCTGCCCGCCTTGGCGCGCATGTCCGAGCTGGACGCTTTAAATACGGTGCTGTCCGAGACCGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACAATGGATGATGCGGCAGT------GGCAGCGGCTGCGAATGCGGGTGGCAATTTGCAGCGCATGCAGCAGATCACAAAGTCAGCCTCCTCCAACATGATGTCACAGCGGATGCA----CT-----ATTACACGCCGT-------------AC---AAC
droAna3	scaffold_13117:5602171-5602415 -		T--------------GCCGCTCGCCCTCACCCGCATGTCCGAGCTGGACGCCCTCAACACTGTTCTCTCGGAGACCGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCGGTGACCATGGATGATGCCGCTGT------GGCAGCTGCCGCCCACACTGGGGGCAATCTCCAGAGGATGCAACAGATCACCAAGTCGGCATCCTCCAATATGATGTCCCAGCGGATGCA----CT-----GCTACACCCCCT-------------AC---AAC
droBip1	scf7180000396642:167001-167260 +		T--------------GCCGCTCGCCCTCACGCGCATGTCCGAACTGGAGGCCCTCAATACCGTGCTCTCGGAGACGGCCGAGTTCCATGTGGTAACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCAGTGACCATGGACGATGCTGCCGT------GGCGGCCGCCGCCCACACCGGAGGCAATCTTCAGAGGATGCAGCAGATCACCAAGTCTGCCTCCTCCAACATGATGTCCCAGCGGATGCA----CT-----ACTACACCCCCTACAACAACAGCAA-CAACAAC
dp5	XL_group1e:286106-286358 -		GCTCT---------CCCTGCCGGCCCTCTCTTGTATGTCCGAAATGGATGCCCTGAACACCGTCCTCTCCGAGACAGCCGAATTCCATGTGGTGACAAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------CGCGGCCGCTGCCCACGCGGGAGGCAATCTGCAGCGCATGCAGCAGATCACAAAATCTGCCTCCTCCAACATGATGTCCCAGCGGACGCA----CT-----ACTACACGGCGT-------------ACACCAAC
droPer2	scaffold_60:45130-45382 +		GCTCT---------CCCTGCCGGCCCTCTCTTGTATGTCCGAAATGGATGCCCTGAACACCGTCCTCTCCGAGACAGCCGAATTCCATGTGGTGACAAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------CGCGGCCGCTGCCCACGCGGGAGGCAATCTGCAGCGCATGCAGCAGATCACAAAATCTGCCTCCTCCAACATGATGTCCCAGCGGACCCA----CT-----ACTACACGGCGT-------------ACACCAAC
droWil2	scf2_1100000004963:2400313-2400571 -		ATTGG---------AATTCCCAGCACTGGCTGGCATGTCCGAAATGGATGCTTTGAATACTGTGTTGTCGGAGACAGCGGAATTCCATGTGGTCACCAAAAAGAAGAAACCAAAGAAGCAACGCGCCGTCACCATGGACGATGCTACTGT------GGGGGCTGCCCATCATACAGGCGGCAATCTGCAGCGCATGCAACCGATCACCAAATCGGCCTCATCCAACATGATGTCTCATCGTGTCCAGCAGCAGCAGCATTATGCCAATC-------------AT---TAT
droVir3	scaffold_12928:6658024-6658273 +		GCTGG---------AATTGCCAACGCTGGCGCGCATGTCCGAAATGGAGGCGCTGAATACGGTGCTTAGCGAAACGGCTGAATTTCATGTGGTCACCAAAAAGAAGAAACCAAAGAAACAGCGCGCCGTCACCATGGATGATGCGGCCGT------TGCGGCAGCGGCAACAACTGGCGGCAATTTGCAGCGCATGCAACAGATAACCAAATCAGCATCGTCCAACATGATGTCACAGCGTTTGCG----CA-----GCAACATGGATT-------------AC---TAC
droMoj3	scaffold_6328:2341051-2341300 +		GCTTG---------AGCTGCCCTCATTGGCGCGCATGTCGGAGATTGAGGCTCTCAATACGGTGCTGACTGAGACGGCCGAGTTCCACGTGGTCACCAAAAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGACGATGCGGCCGT------CGCGGCAGCTGCCACAACCGGCGGCAACTTGCAGCGCATGCAACAGATCACAAAGTCGGCATCGTCCAATATGATGTCGCAACGCTTGCG----CG-----GCAGCAACATGG-------------AC---TAT
droGri2	scaffold_14853:7213665-7213920 -		GTCAACGCTGGCATCGTTGCCAACGCTGGCGCGCATGTCCGAACTGGAGGCGCTCAATACGGTGCTCAGCGAGACGGCCGAGTTTCATGTGGTGACCAAGAAGAAGAAACCAAAGAAACAACGCGCCGTCACCATGGATGATGCAGCGGT------TGCTGCGGCAGCCGCAACTGGTGGCAACTTGCAGCGCATGCAACAGATAACTAAGTCCGCATCATCAAACATGATGTCGCAACGCTTGCG----CG-----GC---ACCATCG-------------AT---TAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCTGG---------CGCTGCCCGCCTTGTCGCGCATGTCCGAACTGGATGCCTTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCCGT------GGCTGCAGCTGCCGTCACGGGCGGCAATTTACAGCGCATGCAGCAGATCACCAAGTCAGCGTCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACTACGT-------------AC---AAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................TCCAACATTATGTCCCAGCGGA................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GACGATGCGGCCGT------GGC...................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................GCATGTCCGAACTGGATG................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GGCAATTTACAGCGCATGCAGCA.........................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GTCTTGTCGGAGACCG.....................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................TGCAGCTGCCGTCACGGGC................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TCCTCCAACATTATGTCCCAGCGGA................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CGGATGCA----CT-----ACTATACT.........................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CGTCCTCCAACATTATGTCCCAGCGGA................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GGCAATTTACAGCGCATG..............................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATTATGTCCCAGCGGATG..............................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AAGCAGCGTGCTGTTACCATGGAC.......................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CCAAAGAAGCAGCGTGCTGTT................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TGTCCCAGCGGATGCA----CT-----ACTATACT.........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAATACCGTCTTGTCGGAGACCGCTGAGT...............................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................CCGAACTGGATGCCTTGAATACC.....................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TGCTGTTACCATGGACGATGCGGC...............................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GCTGG---------CGCTGCCCGCCTTGTCGCGCATGTCCGAACTGGATGCCTTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCCGT------GGCTGCAGCTGCCGTCACGGGCGGCAATTTACAGCGCATGCAGCAGATCACCAAGTCAGCGTCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACTACGT-------------AC---AAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................TTGTCGCGCATGTCCGAACTGGA..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................ACCGCTGAGTTCCATGTGGTT....................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...............................................................................................CCAAGAAGAAGAAACCAAAG...............................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.........................................AACTGGATGCCTTGAATACCGT...................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................AGCGTGCTGTTACCATGGA........................................................................................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................CACCAAGTCAGCGTCCTCCA..................................................................	20	1	1.00	1	0	0	1	0
.................................................GCCTTGAATACCGTCTTGTC.............................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

dm3

GCTGG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGATGCCCTGAATACCGTCTTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACCATGGACGATGCGGCGGT------GGCTGCAGCTGCCGTCACGGGCGGCAACTTACAGCGCATGCAGCAGATCACCAAGTCCGCGTCCTCCAACATCATGTCCCAGCGGATGCA----CT-----ACTATACTCCGT-------------AC---AAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................AAAGAAGCAGCGTGCTGTTACC.............................................................................................................................................................	22	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	9	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................AAGAAGAAGAAACCAAAGAAGC...........................................................................................................................................................................	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	3	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................ATGTCCCAGCGGATGCA----CT-----ACT..............................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TCCGAACTGGATGCCCTGAATACCGT...................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTCACGGGCGGCAACTTACAGCGCAT...............................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................CAAGAAGAAGAAACCAAAGAAGC...........................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................AAGCAGCGTGCTGTTACCA............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................AACTTACAGCGCATGCAGCAGATCA....................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAAGAAACCAAAGAAGCAGCGTGCTG..................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGCGGCGGT------GGCTGCAGCTGC..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TGTTACCATGGACGATGCGGC...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................AGCGTGCTGTTACCATGGG........................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CGCGTCCTCCAACATCATGTCCCAGCGG.................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACCAAAGAAGCAGCGTGCTGT.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GAAGCAGCGTGCTGTTAC..............................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCTCG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGAAGCCCTGAATACCGTCCTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGACGATGCAGCGGT------GGCTGCGGCTGCCGGCACGGGCGGCAACTTGCAGCGCATGCAGCAGATCACCAAGTCCGCATCCTCCAACATTATGTCCCAGCGGATGCA----CT-----ACTATACCCCCT-------------AC---AAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................TGGCGCGCATGTCCGAACTGGAT.................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3
.....................CGCCTTGGCGCGCATGTCCGAACTG....................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................TACCAAGAAGAAGAAACCAAAGAAGC...........................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................AGCCCTGAATACCGTCCTGTCGGA..........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................CGGGCGGCAACTTGCAGCGCATGCAGC..........................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................GTTACCATGGACGATGCAGC...............................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................AACCAAAGAAGCAGCGTGCC...................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
....................................................................................................AAGAAGAAACCAAAGAAGCAGC........................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................CAAAGAAGCAGCGTGCCGTTACCATG..........................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................CAGATCACCAAGTCCGCATC.......................................................................	20	1	1.00	1	0	1	0	0	0	0	0

droYak3

ACTGG---------CGCTGCCCGCCTTGGCGCGCATGTCCGAACTGGATGCCCTGAATACCGTCCTGTCGGAGACCGCTGAGTTCCATGTGGTTACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGATGATGCGGCGGT------GGCTGCGGCTGCAGGCACGGGGGGCAACTTGCAGCGCATGCAGCAGATCACCAAGTCCGCGTCCTCTAACATAATGTCCCAACGGATGCA----CT-----ACTATACCCCGT-------------AC---AAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................GT------GGCTGCGGCTGCAGGCACGGGGGGC.............................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
........................................................................................................................GCGTGCCGTTACCATGGAT.......................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................TGCCCTGAATACCGTCCTGTCGGAG.........................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................GAACTGGATGCCCTGAATACCGT...................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................GCCCGCCTTGGCGCGCATGTC...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................GAACTGGATGCCCTGAATACC.....................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CAACGGATGCA----CT-----ACTATACCCCG......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCAGCGTGCCGTTACCATGGA........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATGCGGCGGT------GGCTGCGGCTGC..........................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................GCGCATGTCCGAACTGGATGCCCTGAAT........................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GCACGGGGGGCAACTTGCAGCG..................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GTCCCAACGGATGCA----CT-----ACT..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................TACCAAGAAGAAGAAACCAAAGAAGCAGC........................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................GTCCCAACGGATGCA----CT-----ACTATACC.........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCTGG---------CGCTGCCTGCCTTAGCCCGCATGTCCGAGGTGGATGCCCTCAACACCGTTCTAACGGAGACCGCCGAATTTCATGTTGTAACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCTGTTACAATGGACGATGCGGCTGT------GGCTGCAGCTGCCACAACCGGCGGCAATTTGCAACGCATGCAGCAGATCACCAAGTCAGCTTCCTCTAACATGATGTCCCAGCGGATGCA----TT-----ACTATGCCCCGT-------------AC---AAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCTGG---------CGCTGCCCGCCCTGGCGCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGCGCCGTCACCATGGACGATGCAGCGGT------GGCGGCTGCCGCCAGTACGGGCGGCAACCTGCAACGCATGCAGCAGATCACCAAGTCGGCCTCCTCCAACATGATGTCCCAGCGGATGCA----CT-----ACTACACGCCGT-------------AC---ACC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTT----------CGCTGCCCGCCTTAACGCGCATGTCCGAGCTAGATGCCCTGAACACTGTGCTCTCCGAAACGGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAACGCGCCGTCACCATGGACGATGCGGCGGTGGCGGTGGCGGCGGCGGCCACCACGGGTGGCAATTTGCAGCGCATGCAGCAGATCACCAAGTCGGCCTCCTCGAACATGATGTCCCAGCGGATGCA----CT-----ACTACACCA----------------GT---AGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTGG---------C---GGCCGCCCTGGCCCGCATGTCCGAGCTGGATGCCCTGAACACTGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------GGCGGCTGCTGCCAGCGCTGGCGGCAATCTGCAACGCATGCAGCAGATCACCAAGTCGGCCTCCTCCAATATGATGTCCCAGCGGACGCA----CT-----ACTACACTCCCT-------------AC---GGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCTGC---------CGTTGCCAGCTTTGGCGCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGCGCCGTAACTATGGACGATGCGGCGGT------GGCGGCGGCTGCCAGCACGGGCGGCAATCTGCAACGCATGCAGCAGATCACGAAGTCGGCCTCCTCCAACATGATGTCCCAGCGGATGCA----TT-----ACTACACTCCTTATG---GGAGCAA-CAGCAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCTGG---------CGTTGCCGGCGCTGGCTCGCATGTCCGAGCTGGATGCCCTGAATACCGTGCTGTCGGAGACCGCCGAATTCCACGTTGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCCGTCACCATGGATGATGCAGCGGT------GGCGGCGGCCGCCAGCACAGGCGGCAATCTCCAGCGCATGCAACAGATCACCAAGTCGGCCTCCTCCAGCATGATGTCGCAGCGGATGCA----CT-----ACTACACCCCGT-------------AC---AAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTGA---------CCCTGCCCGCCTTGGCGCGCATGTCCGAGCTGGACGCTTTAAATACGGTGCTGTCCGAGACCGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACAATGGATGATGCGGCAGT------GGCAGCGGCTGCGAATGCGGGTGGCAATTTGCAGCGCATGCAGCAGATCACAAAGTCAGCCTCCTCCAACATGATGTCACAGCGGATGCA----CT-----ATTACACGCCGT-------------AC---AAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T--------------GCCGCTCGCCCTCACCCGCATGTCCGAGCTGGACGCCCTCAACACTGTTCTCTCGGAGACCGCCGAGTTCCATGTGGTGACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCGGTGACCATGGATGATGCCGCTGT------GGCAGCTGCCGCCCACACTGGGGGCAATCTCCAGAGGATGCAACAGATCACCAAGTCGGCATCCTCCAATATGATGTCCCAGCGGATGCA----CT-----GCTACACCCCCT-------------AC---AAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................GCAACAGATCACCAAGTCGGCATC.......................................................................	24	1	2.00	2	0	2	0	0	0	0
............................................................................................................................................................................................................CACCAAGTCGGCATCCTCCA..................................................................	20	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................ACAGATCACCAAGTCGGCATC.......................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................................................GCGGGCGGTGACCATGGATGATGCCG................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................GCATGTCCGAGCTGGACGCCCTCAA.........................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................GGGGGCAATCTCCAGAGGAT...............................................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................AGAAGCAGCGGGCGGTGACCA............................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................AGCGGATGCA----CT-----GCTACACCCCCT-------------........	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................CAACAGATCACCAAGTCGGCATC.......................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................CGGAGACCGCCGAGTTCCATGTGGT.....................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................GCAACAGATCACCAAGTCGGCAT........................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................CACCAAGTCGGCATCCTCCAATAT..............................................................	24	1	1.00	1	0	1	0	0	0	0
.........................................................................................................GAAACCAAAGAAGCAGCGGGC....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................................................................................................AAGAAACCAAAGAAGCAGC........................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

T--------------GCCGCTCGCCCTCACGCGCATGTCCGAACTGGAGGCCCTCAATACCGTGCTCTCGGAGACGGCCGAGTTCCATGTGGTAACCAAGAAGAAGAAACCAAAGAAGCAGCGGGCAGTGACCATGGACGATGCTGCCGT------GGCGGCCGCCGCCCACACCGGAGGCAATCTTCAGAGGATGCAGCAGATCACCAAGTCTGCCTCCTCCAACATGATGTCCCAGCGGATGCA----CT-----ACTACACCCCCTACAACAACAGCAA-CAACAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCTCT---------CCCTGCCGGCCCTCTCTTGTATGTCCGAAATGGATGCCCTGAACACCGTCCTCTCCGAGACAGCCGAATTCCATGTGGTGACAAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------CGCGGCCGCTGCCCACGCGGGAGGCAATCTGCAGCGCATGCAGCAGATCACAAAATCTGCCTCCTCCAACATGATGTCCCAGCGGACGCA----CT-----ACTACACGGCGT-------------ACACCAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................GAAATGGATGCCCTGAACACC.....................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	1
.........................................AAATGGATGCCCTGAACA.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................CAAAATCTGCCTCCTCCAAC................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................TATGTCCGAAATGGATGCCCTGAAA........................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................TGCCCTGAACACCGTCCT................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATGATGTCCCAGCGGACGCA----CT-----A................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.CTCT---------CCCTGCCGGCCCT.......................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	1	0	0

droPer2

GCTCT---------CCCTGCCGGCCCTCTCTTGTATGTCCGAAATGGATGCCCTGAACACCGTCCTCTCCGAGACAGCCGAATTCCATGTGGTGACAAAGAAGAAGAAACCAAAGAAGCAGCGAGCCGTCACCATGGACGATGCGGCCGT------CGCGGCCGCTGCCCACGCGGGAGGCAATCTGCAGCGCATGCAGCAGATCACAAAATCTGCCTCCTCCAACATGATGTCCCAGCGGACCCA----CT-----ACTACACGGCGT-------------ACACCAAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................ATGCCCTGAACACCGTCCTCTCCGAGA........................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
....................................................CTGAACACCGTCCTCTCCGAGAC.......................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..........................................AATGGATGCCCTGAACACC.....................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.................................................................TCTCCGAGACAGCCGAATTCCATGTGG......................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................TCTGCCTCCTCCAACATGATGTCC.......................................................	24	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................GCAGCGAGCCGTCACCAT...........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
................................GTATGTCCGAAATGGATGCCCTGAACACC.....................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................ATCACAAAATCTGCCTCCTCCAAC................................................................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................GGAGGCAATCTGCAGCGCATG..............................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................CTCCGAGACAGCCGAATTCCATGT........................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droWil2

ATTGG---------AATTCCCAGCACTGGCTGGCATGTCCGAAATGGATGCTTTGAATACTGTGTTGTCGGAGACAGCGGAATTCCATGTGGTCACCAAAAAGAAGAAACCAAAGAAGCAACGCGCCGTCACCATGGACGATGCTACTGT------GGGGGCTGCCCATCATACAGGCGGCAATCTGCAGCGCATGCAACCGATCACCAAATCGGCCTCATCCAACATGATGTCTCATCGTGTCCAGCAGCAGCAGCATTATGCCAATC-------------AT---TAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................GTCTCATCGTGTCCAGCAGCA......................................	21	1	3.00	3	3	0	0	0	0
.......................................................AATACTGTGTTGTCGGAGACAGC....................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...........................................ATGGATGCTTTGAATACTGTGTTGT..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................................ACTGTGTTGTCGGAGACAGCG...................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.........................................................................................................................................ACGATGCTACTGT------GGGGG.................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................CTTTGAATACTGTGTTGTCGGA..........................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................GTCTCATCGTGTCCAGCAGCAGC....................................	23	1	1.00	1	0	0	1	0	0
.....................................................................................................................................ATGGACGATGCTACTGT------GGGGGCTGC.............................................................................................................................	26	1	1.00	1	0	0	0	1	0
...........................................ATGGATGCTTTGAATACTGTGTTGTC.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
................................................TGCTTTGAATACTGTGTTGT..............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........................................................................GACAGCGGAATTCCATGTGGT.....................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................TTTGAATACTGTGTTGTCGGA..........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
....................................................................CGGAGACAGCGGAATTCCATGTG.......................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
......................................................GAATACTGTGTTGTCGGAGACAGC....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................CATGGACGATGCTACTGT------GGGGGC................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.....................................................TGAATACTGTGTTGTCGGA..........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................ATGTCTCATCGTGTCCAGCAGCA......................................	23	1	1.00	1	0	1	0	0	0
........................................................ATACTGTGTTGTCGGAGACA......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................GTCTCATCGTGTCCAGCAGCAGCAGC.................................	26	1	1.00	1	0	1	0	0	0
......................................................................................................................CAACGCGCCGTCACCATGGAC.......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................CCAAATCGGCCTCATCCAACAT..............................................................	22	1	1.00	1	0	0	0	1	0
ATTGG---------AATTCCCAGCACTGGCTGGC................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................CGTGTCCAGCAGCAGCAGCA................................	20	4	0.25	1	0	1	0	0	0

droVir3

GCTGG---------AATTGCCAACGCTGGCGCGCATGTCCGAAATGGAGGCGCTGAATACGGTGCTTAGCGAAACGGCTGAATTTCATGTGGTCACCAAAAAGAAGAAACCAAAGAAACAGCGCGCCGTCACCATGGATGATGCGGCCGT------TGCGGCAGCGGCAACAACTGGCGGCAATTTGCAGCGCATGCAACAGATAACCAAATCAGCATCGTCCAACATGATGTCACAGCGTTTGCG----CA-----GCAACATGGATT-------------AC---TAC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................................................................................................................GTCCAACATGATGTCACAGCGTTTGC.............................................	26	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGATAACCAAATCAGCATC.......................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAGATAACCAAATCAGCATC.......................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATGATGTCACAGCGTTTGC.............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CACCATGGATGATGCGGCCGT------......................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GTCCAACATGATGTCACAGCGTT................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATTTGCAGCGCATGCAACAGATA.....................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GCAACAGATAACCAAATCAGCATCGT.....................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCGCTGAATACGGTGCTTAGC............................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................GGCAATTTGCAGCGCATGC.............................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCTGG---------AATTGCCAACGCTGG.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AACAGATAACCAAATCAGCATCGTC....................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCTGAATACGGTGCTTAGCGAAACGGCT...................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................AAATCAGCATCGTCCAACATGAT...........................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................ATGTGGTCACCAAAAAGAAGA.......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AACAGATAACCAAATCAGCATC.......................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CGTCCAACATGATGTCACAGCGTT................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................ATGATGTCACAGCGTTTGCG----C.......................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GCTGAATACGGTGCTTAGCGAAAC.......................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGCCAACGCTGGCGCGCATGTCC..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................TGGATGATGCGGCCGT------TGC...................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGGCGCGCATGTCCGAAATGGAG.................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................ACAGATAACCAAATCAGCATCGTCC...................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................CTGAATACGGTGCTTAGCGAAA........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................CACCATGGATGATGCGGC...............................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GTCACCATGGATGATGCGGCC..............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................AACATGATGTCACAGCGTTTGCG----C.......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AACGGCTGAATTTCATGTGGT.....................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................ATAACCAAATCAGCATCGTCCAACATGAT...........................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GATAACCAAATCAGCATCGTCCAACA...............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ATACGGTGCTTAGCGAAACGG.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AAACGGCTGAATTTCATGTGGTCA...................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ATACGGTGCTTAGCGAAAC.......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................AACATGATGTCACAGCGTTTGC.............................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTTG---------AGCTGCCCTCATTGGCGCGCATGTCGGAGATTGAGGCTCTCAATACGGTGCTGACTGAGACGGCCGAGTTCCACGTGGTCACCAAAAAGAAGAAACCAAAGAAGCAGCGTGCCGTTACCATGGACGATGCGGCCGT------CGCGGCAGCTGCCACAACCGGCGGCAACTTGCAGCGCATGCAACAGATCACAAAGTCGGCATCGTCCAATATGATGTCGCAACGCTTGCG----CG-----GCAGCAACATGG-------------AC---TAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................AGCGTGCCGTTACCATGGAC.......................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................................................CAACAGATCACAAAGTCGGCATC.......................................................................	23	1	2.00	2	2	0	0	0	0	0
................................................................................AGTTCCACGTGGTCACCAAAAAGAAGA.......................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................ATACGGTGCTGACTGAGACGGCCG..................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
................................GCATGTCGGAGATTGAGGC...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................CAAAGTCGGCATCGTCCAATATGATG..........................................................	26	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................AGCGCATGCAACAGATCACAAAGTCGG...........................................................................	27	1	1.00	1	0	0	0	0	0	1

droGri2

GTCAACGCTGGCATCGTTGCCAACGCTGGCGCGCATGTCCGAACTGGAGGCGCTCAATACGGTGCTCAGCGAGACGGCCGAGTTTCATGTGGTGACCAAGAAGAAGAAACCAAAGAAACAACGCGCCGTCACCATGGATGATGCAGCGGT------TGCTGCGGCAGCCGCAACTGGTGGCAACTTGCAGCGCATGCAACAGATAACTAAGTCCGCATCATCAAACATGATGTCGCAACGCTTGCG----CG-----GC---ACCATCG-------------AT---TAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................CAACGCTTGCG----CG-----GC---ACCATC......................	21	1	1.00	1	1	0
............................................................................................................................................................................................................................................AACGCTTGCG----CG-----GC---ACCAT.......................	19	1	1.00	1	1	0
........................................................................................................................ACGCGCCGTCACCATGGATGAT....................................................................................................................................................	22	1	1.00	1	1	0

dsi_23494

x:3703722-3703871 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.3	-21.9	-21.9