dsi_23471

exon [2r_6245552_6246334_-]; CDS [2r_6245552_6246334_-]; exon [2r_6242843_6245412_-]; CDS [2r_6242843_6245412_-]; intron [2r_6245413_6245551_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------################################################## ATCTAGCGGACCAGGAACGGAACCAATTTACAGGAATAGCTCCATGTTAGGTATGAGAAGTATATAAAACAAGTCGATATACGACATTAATATAATTAAGTAAACACAATGGCCACTAAGGAAAGCGCTATATTATAAAGAATCAATTTCCGCATGTAATAACGTTGATTTCCACTCTTTCTTCTGTAGGTAATATGCCCGCTGCCACCCCGGGATCGGGACCGAAATCAAGCGCTGCT ************************************************.(((.(((((............((((.....))))..................................((((((((...(((((((..(((.....)))....))))))).)))...))))).......)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553488 RT_0-2 hours eggs
......CGGACCAGGAACGGAACC.......................................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................TGCCCGCTGCCACCCCGGGATCGGGACA................	28	1	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................CGGGATCGGGACCGAA.............	16	0	1	1.00	1	0	0	1	0	0	0
..CTAGCGGACCAGGAACGGAACC.......................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0
....AGCGGACCAGAAACGGAACC.......................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0
...TAGCGGACCAGGAACGGAAC........................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
................................................................................................................................TATATTCTAAAAAATCAGTTTCC........................................................................................	23	3	4	0.50	2	0	0	0	2	0	0
....................................................................................................................................................................................CTTCTGTAGGGAATA............................................	15	1	8	0.13	1	0	1	0	0	0	0
............................TCCAGGAATAGCTCC....................................................................................................................................................................................................	15	1	15	0.07	1	0	0	0	0	0	1
................ACGGATCCAATTTACGGGC............................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	1	0
..............................................................................................................................................................................................................AGCCCGGGGTCGGAACCG...............	18	3	18	0.06	1	0	0	0	0	1	0

TAGATCGCCTGGTCCTTGCCTTGGTTAAATGTCCTTATCGAGGTACAATCCATACTCTTCATATATTTTGTTCAGCTATATGCTGTAATTATATTAATTCATTTGTGTTACCGGTGATTCCTTTCGCGATATAATATTTCTTAGTTAAAGGCGTACATTATTGCAACTAAAGGTGAGAAAGAAGACATCCATTATACGGGCGACGGTGGGGCCCTAGCCCTGGCTTTAGTTCGCGACGA ************************************************.(((.(((((............((((.....))))..................................((((((((...(((((((..(((.....)))....))))))).)))...))))).......)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs
................................................................................TGCTGTAATTATATCAAAACATT........................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0
...........GTCCTTGCCCTGATTAAAAGT...............................................................................................................................................................................................................	21	3	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................TTGCAACTAGAGGTG................................................................	15	1	8	0.25	2	0	0	0	2	0	0
...........................................................................CTGTATACTGTGATTATATTA...............................................................................................................................................	21	3	4	0.25	1	0	0	0	0	1	0
................................CCTTATCGAGGGGCAAT..............................................................................................................................................................................................	17	2	5	0.20	1	0	0	1	0	0	0
..........................AAAGGTCCTTATCGACGT...................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	1
................................................................................TGCTGTAATTATATCAAAACA..........................................................................................................................................	21	3	7	0.14	1	1	0	0	0	0	0
..............................................................................................................................................................................................ATTATACCGGCGACG..................................	15	1	8	0.13	1	0	0	1	0	0	0
...............................................................................CTGCTGTAATTATATCAA..............................................................................................................................................	18	2	11	0.09	1	1	0	0	0	0	0
................................................................................................................................................................TTGAAACTAAAGGTCTGAAAG..........................................................	21	3	12	0.08	1	0	1	0	0	0	0
............................................................................................................................................TTAGGTAAACGCGCACATTA...............................................................................	20	3	13	0.08	1	0	0	0	0	0	1
.............CCATGCCTGGGTTATATGT...............................................................................................................................................................................................................	19	3	16	0.06	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:6245363-6245601 -	dsi_23471	ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTATG-------AGAAG----------------------------------------------------------------------------------TATATAAAAC------------------------------------------------------------------AAGTCGATATACGACATTAATATAATTAAGTAAAC-------------ACAATGGCCACTAAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCATGTAATAACGTTGATTTCCA--CTCTTT----------------------------------CTT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAGCGCTGCT
droSec2	scaffold_1:3074953-3075191 -		ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTATG-------AGAAA----------------------------------------------------------------------------------TATACAAAAC------------------------------------------------------------------AAGACGTTATACGACATTAATATAAATTAGTAAAC-------------ACAATGGACACTTAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCATGGAATAACGTTGATTTCCA--CTCTTT----------------------------------CTT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAGCGCTGCT
dm3	chr2R:5460239-5460472 -		ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTAAT---TATGATTAG----------------------------------------------------------------------------------TATACAAAAC------------------------------------------------------------------AAGTCGA---------TTAATATAATTAAGTAAGA-------------ACATTGGATACTAAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCAGAGAATAACGTTGATTTCCA--CTCATT----------------------------------CCT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAACGCTGCT
droEre2	scaffold_4929:8896072-8896295 +		ATCCACC---GGTCCAGTAACGG---------AACCAATTTACAGGAACAGCTCCATGTTAGGTAAT---TATGAGTAATTTGCATAAA--TTAGGTTTTCGTA--------------------------------------------GTAT---------TATACAAAACATTGATGTTAAAC--------TAAATCTTAATCTAT------------------------ATAACTAAATCGATATACGACATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCA--ATTATT----------------------------------CTT--TTTTAGGTAATATGCCCGC---CAGCACACCGGGATCAGGGCCGAAATCAAGCTCTGCT
droYak3	2L:18091778-18091997 -		ATCCAGC---GGACCAGCAACGG---------AACCAATTTACAGGAACAGCTCGATGTTAGGTAAT---TATGAGTAA----------------------------------------------------------------------------------TTTTC--------------------------------TTAATCT--------------TTTAATAGATATATAATCAAATCGATATA-------------------------------------------GACACTTTTGAAAGCT-----------AGACGCAA--TC-------------------------------------------------------------------------------CTCAGATAGTAACGTTGACTTCCA--CTCTTG----------------------------------TTT--CTATAGGCAATATGCCCGC---TGCCACCCCGGGATCGGGGCCGAAATCAAGCGCTGCT
droEug1	scf7180000409209:704510-704822 +		TTCAACA---GGACCACCAATCG---------AACCACTTTACAGGGCTAACTCCATGCTTGGTAAA---TATGACTTCTTTG-------ATTCGCTGTATGAG---------------CA--AAAATTGGTTACTCATCCTTATCATCCTTCAGTGGAAC-------AAAGAAAATGTTGAAT--------TAAATCGTATTTT--GA------CCAATCG----------------------------------------ATCATTAACGAAC-------------------------------------------------------------------------------TGCCTACTAATTTAGACCTCTAAAGACAGCCAAATT-TTTTTTTTAGCGATCT-ATCCACAGAATAACGTTGATTTTTA--CAC--T----------------------------------TTC--CTTTAGGTAACATGCCTAC---ATCCACCCCTGGATCGGGACCCAAATCAACCTCTGCC
droBia1	scf7180000301506:1259808-1260136 +		TTCCACC---GGACCACCGACCG---------AACCGCTTTTCAGGAGCAACTCCATGCTAGGTAAT---TATCAGATCTTTGCTTAAGAATTTACAATTTGAG---------------CACAGGTATGAGTTAATCATATTCTTTTTATTTGA-AAAAT-----------------ATTACAT--------T-----TAAGTTTTTGAGCCAAACTTACTA---------------------------AGTAAGAAAG----------------------------------------------CC-----------AAACGCAT-----------TA--GCCAAAC----CTTGTCTGTTAAATGAATCCGTCGAAGACAA-----TACAGTCTTTCACTACTTTCTGCCAGAAAATAACGTTGATTCTCA--TGC--T----------------------------------TTT--CCCTAGGTAACATGCCCTC---TGCCACACCCGGATCAGGACCCAAGTCCAGCGCTGCG
droTak1	scf7180000415401:523712-524032 -		TTCCACC---GGACCACCAAGCG---------AACCACTTTTCAGGAGCAACTCCATGCTAGGTAAC---TATTAGTTATTTGTATTCAAGTTTGTAA--------AAGAGAAAGTGAACACATCAACGAGCTACTCAGCTTATTTTTATTTTA-AAAACG-------TATGTTAGTGTTCAAT--------TAAGTCTCAATTTATAA------GCAACTA---------------------------AGCAAGAA-----------------------------C-----------------------------------------------------------------TTAGCTTGCTGACTAAATCCACTAAACACAT-----CA----TTTTCACTACTTTTCGCCAGAGAATAACGTTGATTCCCA--TGC--T----------------------------------CTT--CCATAGGTAACATGCCCTC---TGCCACAACCGGATCGGGACCCAAATCCAGCGCTGCT
droEle1	scf7180000491107:1651345-1651717 +		TTCCACCGGTGGTCCGCCAAGCG---------AGGCGCTCTACAGGTCCAACTCCATGCTAGGTAAG---CACGTGCTGTTGCTACTAGAGTTGGGTATTTGGGTCACGAGTTGGTGAATAGAC--AAGAGTTACTCATCTTCTTTAAAGTTAA-CCTA----------ACCCAAGTGCTTCATTATTTCTTG------TAATTTATG-GCACAACCAACTT---------------------------GGCAAGAATGCAATTAAGTAAGCAAGTTAAC-------ACTGCACAG-----------------------------------------TATGGGTAACTCTTTTCAG-CCGCTGACAAAGCCCAC--------------TGCAGTCTTTAAGCAATCTCTGCCAGAGAATAACGTTTGTTTTCA--ATG-------------------------------------TTT--TCCTAGGTAACATGCCCCT---TGCCACTCCCGGTGCGGGACCGAAATCGAACGCTGCC
droRho1	scf7180000777217:348028-348328 -		TTCCACC---GGACCGCCAACCG---------AGCCGCTCTACAGGTCCAACTCCATGCTAGGTAAG---CACGT-----TACTTATACAGTTTGGTATTTGGGTCACAAGTTAG---ATAAACAAACGAGTTATTCATCATTTTTTAAGTTAA-AATACG--------------------------------------TAATTT--------------CTT---------------------------AACAAGAATGCAAGCAAGTAAA--------TAATACACAA------------------------------------------------T----------------TGCCCGCTGACTGAAA----------AAA-----AGCAGTCTTTCAGAGATCTTTGCCAGAGAATAACGTT-------ACACA--AT----------------------------------TTT--CCACAGGTAACATGCCCCT---TGCCACCCCCGGTTCGGGACCCAAATCAAGCGCTGCG
droFic1	scf7180000453858:1250165-1250350 +		TTCCACT---GGACCACAAACCG---------AGGCGCTCTACAGGAGTAACTCAATACTAGGTAAT---CATAAGTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAC------------------------------------------------TT------------------------TGAGC------------------------------GAAGTCTTTCAGTAATAACAGCCAGAGAATAACGTATTTTCTCC--CCC-AT----------------------------------TTT--GCATAGGTAACATGCCCAT---AGCCACACCCGGATCGGGACCAAAATCAAGCGCTGCG
droKik1	scf7180000302476:850117-850167 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAACATGCCCGC---TGCCACGCCCGGATCAGGACCCAAATCGAACGTAGCT
droAna3	scaffold_13266:162866-163027 +		TTCATCA---GGACCGCCCACGG---------AGGCACTTTTCCGAGCTAATTCAATGGCAGGTACG---GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCT-------------------------------------------------------------------------------------------------------------------------------------ATTATTTCTGGGGA------------------------------CACCTTATAATACTTTC-------AATTCTATTTTAAAGGTAACGTGCCTGG---TGGCACTCTCGGATCGGGCTCCAAATCAGCCGTTGCT
droBip1	scf7180000396730:1184864-1185023 +		TTCCTCA---GGGCCGCCAACAG---------AGCCACTCTTCCGAGCTAACTCCATGCCAGGTGAG---GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCCA--ATCTTT----CTTAACTTTTAATAATTTTG------AACTCTATCTTGAAGGTAATGTGCCCGG---TGTCACCCTCGGATCGGGAGCCAAGACATCCGTTGCT
dp5	3:15901562-15901732 -		AGCCACA---GGACCACCGACGG---------AACCGCTCTATCGCACCAGTGCCATGCAAGGTAAG---CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGTAGCGGACTGAAC------------------------------------------------GCTGCAAAATA-----------------------------------------------------------------------------GCTAACGTTTGTGTTTT--CTTTCG-----------------------------------AT--TCTTAGGTCATGTGCCGGCAACTGCAGCTCCCAGCTCCGGCCAGAAGCCCACTGTGGCT
droPer2	scaffold_4:860213-860383 +		GGCCACA---GGACCACCGACGG---------AACCGCTCTATCGCACTAGTGCCATGCAAGGTAAG---CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTAGCGGACTGAAC------------------------------------------------GCTGCAAAATA-----------------------------------------------------------------------------GCTAACGTTTGTGTTTT--CTTTCG-----------------------------------AT--TCTTAGGTCATGTGCCGGCAACTGCAGCTCCCAGCTCCGGCCAGAAGCCCACTGTGGCT
droWil2	scf2_1100000004513:3326688-3326745 -		AGCTTCTGCAGGAGCGGGAGGGGCTGCAGAACCACCACTTTATAGGACCAATGCAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_10324:259316-259386 -		TAAAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTCA--A-------------------------------------TCCTC--TTGCAGGCAATATGGCAGC---TGCTCCGAATG------TACAGAAGCAGCCCGTTGTA
droMoj3	scaffold_6496:2074173-2074336 -		CTATAGCA--CAAGGAGCAGCTG---------AACCGCTATATCGTGCCAATTCAATGCCAGGTATGGAGCCA---CTAATATCATCAA--------------------------------------TAA-------------------------------ATT-C--------------------------------CT------------------------------------------------------------------------------------------------------------------------AATCCGTTTC-------------------------------------------------------------------------------TAACTG----------TATT-TCA--AA------------------------------------TTCCA--TTCCAGGCAACATGCCCAC---AGCTCCGAATG------TACAAAAGCCGCCTGTGGTT
droGri2	scaffold_15245:15364781-15364937 +		AATCGCC---CAGGGCGGAGCGG---------AACCGCTCTACCGTCCCAATTCAATGCCTGGTAAG---TGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCC--TCGACTCTCGTGCAATTTGTACTGAATTCATATCGTAATTGAT--TTGCAGGCAACATGGCTGC---AGCACA----GAAT--GTGCAGAAGCCGCCGGTTGCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTATG-------AGAAG----------------------------------------------------------------------------------TATATAAAAC------------------------------------------------------------------AAGTCGATATACGACATTAATATAATTAAGTAAAC-------------ACAATGGCCACTAAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCATGTAATAACGTTGATTTCCA--CTCTTT----------------------------------CTT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAGCGCTGCT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......C---GGACCAGGAACGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGC---TGCCACCCCGGGATCGGGACA................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGATCGGGACCGAA.............	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..CTAGC---GGACCAGGAACGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TAGC---GGACCAGGAACGG---------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTATG-------AGAAA----------------------------------------------------------------------------------TATACAAAAC------------------------------------------------------------------AAGACGTTATACGACATTAATATAAATTAGTAAAC-------------ACAATGGACACTTAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCATGGAATAACGTTGATTTCCA--CTCTTT----------------------------------CTT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAGCGCTGCT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGATCGGGACCGAAAT...........	18	1	1.00	1	0	0	1	0
....................CGG---------AACCAATTTACAGGAATAGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
....................................AATTTACAGGAATAGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACCCCGGGATCGGGACCGA..............	23	1	1.00	1	1	0	0	0
.....................................ATTTACAGGAATAGCTCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...................................CAATTTACAGGAATAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1

dm3

ATCTAGC---GGACCAGGAACGG---------AACCAATTTACAGGAATAGCTCCATGTTAGGTAAT---TATGATTAG----------------------------------------------------------------------------------TATACAAAAC------------------------------------------------------------------AAGTCGA---------TTAATATAATTAAGTAAGA-------------ACATTGGATACTAAGGAAAGCGCTATATTATAAAGAATCAATTTC-------------------------------------------------------------------------------CGCAGAGAATAACGTTGATTTCCA--CTCATT----------------------------------CCT--CTGTAGGTAATATGCCCGC---TGCCACCCCGGGATCGGGACCGAAATCAAACGCTGCT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................TTTACAGGAATAGCTCCATGTTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---TGCCACCCCGGGATCGGGACCGAAA............	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATCTAGC---GGACCAGGAACGG---------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCTAGC---GGACCAGGAACGG---------AACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TAGC---GGACCAGGAACGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGC---GGACCAGGAACGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AACCAATTTACAGGAATAGCTCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................GG---------AACCAATTTACAGGAATAGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCGC---TGCCACCCCGGGATCGGG...................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CCAGGAACGG---------AACCAATTTACAGGAATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACCAATTTACAGGAATAGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACCCCGGGATCGGGACCGAAA............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGATTTCCA--CTCATT----------------------------------CCT--CTGTAG.....................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CTCCATGTTAGGTAAT---ATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATCCACC---GGTCCAGTAACGG---------AACCAATTTACAGGAACAGCTCCATGTTAGGTAAT---TATGAGTAATTTGCATAAA--TTAGGTTTTCGTA--------------------------------------------GTAT---------TATACAAAACATTGATGTTAAAC--------TAAATCTTAATCTAT------------------------ATAACTAAATCGATATACGACATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCA--ATTATT----------------------------------CTT--TTTTAGGTAATATGCCCGC---CAGCACACCGGGATCAGGGCCGAAATCAAGCTCTGCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................GTAACGG---------AACCAATTTACAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAGGGCCGAAATCAAGCT.....	22	1	1.00	1	1	0	0	0	0	0	0
.....................GG---------AACCAATTTACAGGAACAGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..................AACGG---------AACCAATTTACAGGAACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
................................AACCAATTTACAGGAACAGCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC---CAGCACACCGGGATCAG....................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................ATTTACAGGAACAGCTCCATGTTAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.....................................ATTTACAGGAACAGCTCCATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
........................................TACAGGAACAGCTCCATGTTAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...............AGTAACGG---------AACCAATTTACAGGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.....................................ATTTACAGGAACAGCTCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............CAGTAACGG---------AACCAATTTACAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

ATCCAGC---GGACCAGCAACGG---------AACCAATTTACAGGAACAGCTCGATGTTAGGTAAT---TATGAGTAA----------------------------------------------------------------------------------TTTTC--------------------------------TTAATCT--------------TTTAATAGATATATAATCAAATCGATATA-------------------------------------------GACACTTTTGAAAGCT-----------AGACGCAA--TC-------------------------------------------------------------------------------CTCAGATAGTAACGTTGACTTCCA--CTCTTG----------------------------------TTT--CTATAGGCAATATGCCCGC---TGCCACCCCGGGATCGGGGCCGAAATCAAGCGCTGCT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........GGACCAGCAACGG---------AACCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....GC---GGACCAGCAACGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
..................AACGG---------AACCAATTTACAGGAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................TTTACAGGAACAGCTCGATGTTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................ACCAATTTACAGGAACAGCTCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCGC---TGCCACCCCGG..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........GACCAGCAACGG---------AACCAATTTACAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
ATCCAGC---GGACCAGCAACGG---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGGCCGAAATCAAGCGC....	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................TACAGGAACAGCTCGATGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................CAGGAACAGCTCGATGTTAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................AACCAATTTACAGGAACAGCTCGATGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................ATTTACAGGAACAGCTCGATGTTAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..CCAGC---GGACCAGCAACGG---------AACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................ATTTACAGGAACAGCTCGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCGGGATCGGGGCCGAAATCAAGCGCTGC.	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
....................................AATTTACAGGAACAGCTCGATGTTAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................TTTACAGGAACAGCTCGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................GAACAGCTCGATGTTAGGTAAT---TATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........GACCAGCAACGG---------AACCAATTTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................TTACAGGAACAGCTCGATGTTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TTCAACA---GGACCACCAATCG---------AACCACTTTACAGGGCTAACTCCATGCTTGGTAAA---TATGACTTCTTTG-------ATTCGCTGTATGAG---------------CA--AAAATTGGTTACTCATCCTTATCATCCTTCAGTGGAAC-------AAAGAAAATGTTGAAT--------TAAATCGTATTTT--GA------CCAATCG----------------------------------------ATCATTAACGAAC-------------------------------------------------------------------------------TGCCTACTAATTTAGACCTCTAAAGACAGCCAAATT-TTTTTTTTAGCGATCT-ATCCACAGAATAACGTTGATTTTTA--CAC--T----------------------------------TTC--CTTTAGGTAACATGCCTAC---ATCCACCCCTGGATCGGGACCCAAATCAACCTCTGCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCCACC---GGACCACCGACCG---------AACCGCTTTTCAGGAGCAACTCCATGCTAGGTAAT---TATCAGATCTTTGCTTAAGAATTTACAATTTGAG---------------CACAGGTATGAGTTAATCATATTCTTTTTATTTGA-AAAAT-----------------ATTACAT--------T-----TAAGTTTTTGAGCCAAACTTACTA---------------------------AGTAAGAAAG----------------------------------------------CC-----------AAACGCAT-----------TA--GCCAAAC----CTTGTCTGTTAAATGAATCCGTCGAAGACAA-----TACAGTCTTTCACTACTTTCTGCCAGAAAATAACGTTGATTCTCA--TGC--T----------------------------------TTT--CCCTAGGTAACATGCCCTC---TGCCACACCCGGATCAGGACCCAAGTCCAGCGCTGCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCCACC---GGACCACCAAGCG---------AACCACTTTTCAGGAGCAACTCCATGCTAGGTAAC---TATTAGTTATTTGTATTCAAGTTTGTAA--------AAGAGAAAGTGAACACATCAACGAGCTACTCAGCTTATTTTTATTTTA-AAAACG-------TATGTTAGTGTTCAAT--------TAAGTCTCAATTTATAA------GCAACTA---------------------------AGCAAGAA-----------------------------C-----------------------------------------------------------------TTAGCTTGCTGACTAAATCCACTAAACACAT-----CA----TTTTCACTACTTTTCGCCAGAGAATAACGTTGATTCCCA--TGC--T----------------------------------CTT--CCATAGGTAACATGCCCTC---TGCCACAACCGGATCGGGACCCAAATCCAGCGCTGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCCACCGGTGGTCCGCCAAGCG---------AGGCGCTCTACAGGTCCAACTCCATGCTAGGTAAG---CACGTGCTGTTGCTACTAGAGTTGGGTATTTGGGTCACGAGTTGGTGAATAGAC--AAGAGTTACTCATCTTCTTTAAAGTTAA-CCTA----------ACCCAAGTGCTTCATTATTTCTTG------TAATTTATG-GCACAACCAACTT---------------------------GGCAAGAATGCAATTAAGTAAGCAAGTTAAC-------ACTGCACAG-----------------------------------------TATGGGTAACTCTTTTCAG-CCGCTGACAAAGCCCAC--------------TGCAGTCTTTAAGCAATCTCTGCCAGAGAATAACGTTTGTTTTCA--ATG-------------------------------------TTT--TCCTAGGTAACATGCCCCT---TGCCACTCCCGGTGCGGGACCGAAATCGAACGCTGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCCACC---GGACCGCCAACCG---------AGCCGCTCTACAGGTCCAACTCCATGCTAGGTAAG---CACGT-----TACTTATACAGTTTGGTATTTGGGTCACAAGTTAG---ATAAACAAACGAGTTATTCATCATTTTTTAAGTTAA-AATACG--------------------------------------TAATTT--------------CTT---------------------------AACAAGAATGCAAGCAAGTAAA--------TAATACACAA------------------------------------------------T----------------TGCCCGCTGACTGAAA----------AAA-----AGCAGTCTTTCAGAGATCTTTGCCAGAGAATAACGTT-------ACACA--AT----------------------------------TTT--CCACAGGTAACATGCCCCT---TGCCACCCCCGGTTCGGGACCCAAATCAAGCGCTGCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTCCACT---GGACCACAAACCG---------AGGCGCTCTACAGGAGTAACTCAATACTAGGTAAT---CATAAGTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAAAC------------------------------------------------TT------------------------TGAGC------------------------------GAAGTCTTTCAGTAATAACAGCCAGAGAATAACGTATTTTCTCC--CCC-AT----------------------------------TTT--GCATAGGTAACATGCCCAT---AGCCACACCCGGATCGGGACCAAAATCAAGCGCTGCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAACATGCCCGC---TGCCACGCCCGGATCAGGACCCAAATCGAACGTAGCT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTCATCA---GGACCGCCCACGG---------AGGCACTTTTCCGAGCTAATTCAATGGCAGGTACG---GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGTCT-------------------------------------------------------------------------------------------------------------------------------------ATTATTTCTGGGGA------------------------------CACCTTATAATACTTTC-------AATTCTATTTTAAAGGTAACGTGCCTGG---TGGCACTCTCGGATCGGGCTCCAAATCAGCCGTTGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTCTCGGATCGGGCTC................	20	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGG---TGGCACTCTCGGATCGGG...................	24	1	1.00	1	1	0	0	0	0	0
..CATCA---GGACCGCCCACGG---------AGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCTCGGATCGGGCTCCAAATCAGCC......	29	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTGG---TGGCACTCTCGGAT.......................	22	1	1.00	1	0	1	0	0	0	0
...........GACCGCCCACGG---------AGGCACTTTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................TTTCCGAGCTAATTCAATGGCAGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGCCTGG---TGGCACTCTCGGATCGG....................	28	1	1.00	1	0	0	0	0	1	0
.TCATCA---GGACCGCCCACGG---------AGGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGGATCGGGCTCCAAATCAGCC......	25	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCGGATCGGGCTCCAAAT...........	22	1	1.00	1	0	1	0	0	0	0

droBip1

TTCCTCA---GGGCCGCCAACAG---------AGCCACTCTTCCGAGCTAACTCCATGCCAGGTGAG---GTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCCA--ATCTTT----CTTAACTTTTAATAATTTTG------AACTCTATCTTGAAGGTAATGTGCCCGG---TGTCACCCTCGGATCGGGAGCCAAGACATCCGTTGCT	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCCACA---GGACCACCGACGG---------AACCGCTCTATCGCACCAGTGCCATGCAAGGTAAG---CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGTAGCGGACTGAAC------------------------------------------------GCTGCAAAATA-----------------------------------------------------------------------------GCTAACGTTTGTGTTTT--CTTTCG-----------------------------------AT--TCTTAGGTCATGTGCCGGCAACTGCAGCTCCCAGCTCCGGCCAGAAGCCCACTGTGGCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........GGACCACCGACGG---------AACCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.....................GG---------AACCGCTCTATCGCACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....CA---GGACCACCGACGG---------AACCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........GACCACCGACGG---------AACCGCTCTATCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.GCCACA---GGACCACCGACGG---------AACCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................CGACGG---------AACCGCTCTATCGCACCAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................G---------AACCGCTCTATCGCACCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........GACCACCGACGG---------AACCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTT--CTTTCG-----------------------------------AT--TCTTAG.....................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....CA---GGACCACCGACGG---------AACCGCTCTATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............ACCACCGACGG---------AACCGCTCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................CGCTCTATCGCACCAGTGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GACGG---------AACCGCTCTATCGCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGCCACA---GGACCACCGACGG---------AACCGCTCTATCGCACTAGTGCCATGCAAGGTAAG---CCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAGTAGCGGACTGAAC------------------------------------------------GCTGCAAAATA-----------------------------------------------------------------------------GCTAACGTTTGTGTTTT--CTTTCG-----------------------------------AT--TCTTAGGTCATGTGCCGGCAACTGCAGCTCCCAGCTCCGGCCAGAAGCCCACTGTGGCT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGTGCCGGCAACTGC..................................	19	1	3.00	3	3	0	0	0	0	0
.................CGACGG---------AACCGCTCTATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
................................AACCGCTCTATCGCACTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCCGGCAACTGCAGCT..............................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGCCGGCAACTGCAGCTCCC...........................	24	1	1.00	1	1	0	0	0	0	0
..............CACCGACGG---------AACCGCTCTATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droWil2

AGCTTCTGCAGGAGCGGGAGGGGCTGCAGAACCACCACTTTATAGGACCAATGCAATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....CTGCAGGAGCGGGAGGGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
....................................ACTTTATAGGACCAATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.............................AACCACCACTTTATAGGACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.......GCAGGAGCGGGAGGGGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
.......GCAGGAGCGGGAGGGGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0

droVir3

TAAAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGTCA--A-------------------------------------TCCTC--TTGCAGGCAATATGGCAGC---TGCTCCGAATG------TACAGAAGCAGCCCGTTGTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGAATG------TACAGAAGC...........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGCAGC---TGCTCCGAAT...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATG------TACAGAAGCAGCCCGTT...	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGAATG------TACAGAAGCAGCCC......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---TGCTCCGAATG------TACAG...............	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATG------TACAGAAGCAGCCCGTTGT.	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTATAGCA--CAAGGAGCAGCTG---------AACCGCTATATCGTGCCAATTCAATGCCAGGTATGGAGCCA---CTAATATCATCAA--------------------------------------TAA-------------------------------ATT-C--------------------------------CT------------------------------------------------------------------------------------------------------------------------AATCCGTTTC-------------------------------------------------------------------------------TAACTG----------TATT-TCA--AA------------------------------------TTCCA--TTCCAGGCAACATGCCCAC---AGCTCCGAATG------TACAAAAGCCGCCTGTGGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................ATCGTGCCAATTCAATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..ATAGCA--CAAGGAGCAGCTG---------AACCGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...TAGCA--CAAGGAGCAGCTG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................G---------AACCGCTATATCGTGCCAATTCAATGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....GCA--CAAGGAGCAGCTG---------AACCGCTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------TACAAAAGCCGCCTGTG...	18	1	1.00	1	1	0	0	0	0	0
..........................................TCGTGCCAATTCAATGCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
................................AACCGCTATATCGTGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............AGCAGCTG---------AACCGCTATATCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................CGCTATATCGTGCCAATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
CTATAGCA--CAAGGAGCAGCTG---------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...TAGCA--CAAGGAGCAGCTG---------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............AGCAGCTG---------AACCGCTATATCGTGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............GGAGCAGCTG---------AACCGCTATATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..ATAGCA--CAAGGAGCAGCTG---------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................ATCGTGCCAATTCAATGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..ATAGCA--CAAGGAGCAGCTG---------AACCGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.....GCA--CAAGGAGCAGCTG---------AAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............AGGAGCAGCTG---------AACCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	1	0

droGri2

AATCGCC---CAGGGCGGAGCGG---------AACCGCTCTACCGTCCCAATTCAATGCCTGGTAAG---TGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCC--TCGACTCTCGTGCAATTTGTACTGAATTCATATCGTAATTGAT--TTGCAGGCAACATGGCTGC---AGCACA----GAAT--GTGCAGAAGCCGCCGGTTGCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--GTGCAGAAGCCGCCGGTTG..	22	1	1.00	1	1	0
.....CC---CAGGGCGGAGCGG---------AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0

dsi_23471

2r:6245413-6245551 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads